RNA–Protein interactions for RNA: ENST00000435437.2

RPE-207, Transcript of ribulose-5-phosphate-3-epimerase, humanhuman

TSL 2 BASIC

Gene RPE, Length 858 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPE-207ENST00000435437 NISCHQ9Y2I1 1504 aa22.11■■□□□ 1.13
RPE-207ENST00000435437 CCDC180Q9P1Z9 1646 aa19.7■□□□□ 0.74
RPE-207ENST00000435437 AEBP2Q6ZN18 517 aaPredicted RBP19.67■□□□□ 0.74
RPE-207ENST00000435437 ABCC9O60706 1549 aa19.42■□□□□ 0.7
RPE-207ENST00000435437 RB1CC1Q8TDY2 1594 aa18.55■□□□□ 0.56
RPE-207ENST00000435437 NACADO15069 1562 aa18.51■□□□□ 0.55
RPE-207ENST00000435437 ZCCHC6Q5VYS8 1495 aaKnown RBP18.4■□□□□ 0.54
RPE-207ENST00000435437 MYO15BQ96JP2 1530 aa18.39■□□□□ 0.53
RPE-207ENST00000435437 UNC13AQ9UPW8 1703 aa18.34■□□□□ 0.53
RPE-207ENST00000435437 DCAF8L2P0C7V8 631 aa18.33■□□□□ 0.52
RPE-207ENST00000435437 DCAF1Q9Y4B6 1507 aa18.26■□□□□ 0.51
RPE-207ENST00000435437 CHIC1Q5VXU3 224 aa18.21■□□□□ 0.51
RPE-207ENST00000435437 BICRAQ9NZM4 1560 aa18.19■□□□□ 0.5
RPE-207ENST00000435437 PABPN1Q86U42 306 aaKnown RBP eCLIP18.1■□□□□ 0.49
RPE-207ENST00000435437 DNAJC5BQ9UF47 199 aa18.1■□□□□ 0.49
RPE-207ENST00000435437 SCRIBQ14160 1630 aa17.98■□□□□ 0.47
RPE-207ENST00000435437 SHROOM4Q9ULL8 1493 aa17.77■□□□□ 0.44
RPE-207ENST00000435437 EIF4G1Q04637 1599 aaKnown RBP17.62■□□□□ 0.41
RPE-207ENST00000435437 CC2D2AQ9P2K1 1620 aa17.59■□□□□ 0.41
RPE-207ENST00000435437 CECR2Q9BXF3 1484 aa17.43■□□□□ 0.38
RPE-207ENST00000435437 SMARCA4P51532 1647 aa17.2■□□□□ 0.34
RPE-207ENST00000435437 NCAPD3P42695 1498 aa17.12■□□□□ 0.33
RPE-207ENST00000435437 ATAD2BQ9ULI0 1458 aa17.12■□□□□ 0.33
RPE-207ENST00000435437 MROH2BQ7Z745 1585 aa17.09■□□□□ 0.33
RPE-207ENST00000435437 BAZ1AQ9NRL2 1556 aaPredicted RBP17.07■□□□□ 0.32
RPE-207ENST00000435437 PEG3Q9GZU2 1588 aa17.05■□□□□ 0.32
RPE-207ENST00000435437 HMGXB3Q12766 1538 aa17.01■□□□□ 0.31
RPE-207ENST00000435437 SMARCA2P51531 1590 aa17.01■□□□□ 0.31
RPE-207ENST00000435437 BAZ1BQ9UIG0 1483 aaKnown RBP16.9■□□□□ 0.3
RPE-207ENST00000435437 WIZO95785 1651 aa16.9■□□□□ 0.3
RPE-207ENST00000435437 NESP48681 1621 aa16.83■□□□□ 0.28
RPE-207ENST00000435437 RSF1Q96T23 1441 aaPredicted RBP16.79■□□□□ 0.28
RPE-207ENST00000435437 SENP3Q9H4L4 574 aaPredicted RBP16.78■□□□□ 0.28
RPE-207ENST00000435437 LAMC3Q9Y6N6 1575 aa16.66■□□□□ 0.26
RPE-207ENST00000435437 TOP2AP11388 1531 aaKnown RBP16.64■□□□□ 0.25
RPE-207ENST00000435437 KIF21AQ7Z4S6 1674 aa16.62■□□□□ 0.25
RPE-207ENST00000435437 ERCC6Q03468 1493 aa16.61■□□□□ 0.25
RPE-207ENST00000435437 THOC2Q8NI27 1593 aaKnown RBP16.61■□□□□ 0.25
RPE-207ENST00000435437 CADPSQ9ULU8 1353 aa16.57■□□□□ 0.24
RPE-207ENST00000435437 CUX2O14529 1486 aa16.56■□□□□ 0.24
RPE-207ENST00000435437 PHF23Q9BUL5 403 aaPredicted RBP16.5■□□□□ 0.23
RPE-207ENST00000435437 CFTRP13569 1480 aa16.48■□□□□ 0.23
RPE-207ENST00000435437 CCDC88BA6NC98 1476 aa16.47■□□□□ 0.23
RPE-207ENST00000435437 PDS5BQ9NTI5 1447 aa16.46■□□□□ 0.23
RPE-207ENST00000435437 FANCD2Q9BXW9 1451 aa16.4■□□□□ 0.22
RPE-207ENST00000435437 WDR62O43379 1518 aa16.4■□□□□ 0.22
RPE-207ENST00000435437 MRC2Q9UBG0 1479 aa16.39■□□□□ 0.21
RPE-207ENST00000435437 PRDM2Q13029 1718 aa16.38■□□□□ 0.21
RPE-207ENST00000435437 CEP164Q9UPV0 1460 aa16.35■□□□□ 0.21
RPE-207ENST00000435437 URB2Q14146 1524 aaKnown RBP16.33■□□□□ 0.2
RPE-207ENST00000435437 DNAJC5Q9H3Z4 198 aa16.26■□□□□ 0.19
RPE-207ENST00000435437 POTEDQ86YR6 584 aa16.19■□□□□ 0.18
RPE-207ENST00000435437 TOPBP1Q92547 1522 aa16.16■□□□□ 0.18
RPE-207ENST00000435437 SUPT5HO00267 1087 aaKnown RBP16.12■□□□□ 0.17
RPE-207ENST00000435437 DNMBPQ6XZF7 1577 aa16.1■□□□□ 0.17
RPE-207ENST00000435437 ZNF608Q9ULD9 1512 aaPredicted RBP16.08■□□□□ 0.16
RPE-207ENST00000435437 TARBP1Q13395 1621 aaKnown RBP16.05■□□□□ 0.16
RPE-207ENST00000435437 CUX1P39880 1505 aa16.02■□□□□ 0.15
RPE-207ENST00000435437 IFT140Q96RY7 1462 aa16.02■□□□□ 0.15
RPE-207ENST00000435437 ABCC8Q09428 1581 aa16.01■□□□□ 0.15
RPE-207ENST00000435437 POLA1P09884 1462 aaPredicted RBP16.01■□□□□ 0.15
RPE-207ENST00000435437 EIF4G3O43432 1585 aaKnown RBP15.98■□□□□ 0.15
RPE-207ENST00000435437 RAD54L2Q9Y4B4 1467 aa15.97■□□□□ 0.15
RPE-207ENST00000435437 FGD5Q6ZNL6 1462 aa15.94■□□□□ 0.14
RPE-207ENST00000435437 AQRO60306 1485 aaKnown RBP eCLIP15.92■□□□□ 0.142e-6■■□□□ 13.2
RPE-207ENST00000435437 WDR97A6NE52 1622 aa15.91■□□□□ 0.14
RPE-207ENST00000435437 SOGA1O94964 1423 aa15.87■□□□□ 0.13
RPE-207ENST00000435437 SYNJ1O43426 1573 aa15.85■□□□□ 0.13
RPE-207ENST00000435437 TDRD9Q8NDG6 1382 aaKnown RBP15.84■□□□□ 0.13
RPE-207ENST00000435437 BIVM-ERCC5R4GMW8 1640 aa15.83■□□□□ 0.13
RPE-207ENST00000435437 CHD1O14646 1710 aa15.83■□□□□ 0.13
RPE-207ENST00000435437 FOXD1Q16676 465 aa15.82■□□□□ 0.12
RPE-207ENST00000435437 TOP2BQ02880 1626 aa15.8■□□□□ 0.12
RPE-207ENST00000435437 OSCARQ8IYS5 282 aa15.78■□□□□ 0.12
RPE-207ENST00000435437 ABCA5Q8WWZ7 1642 aa15.78■□□□□ 0.12
RPE-207ENST00000435437 ABCA10Q8WWZ4 1543 aa15.77■□□□□ 0.11
RPE-207ENST00000435437 WRNQ14191 1432 aaPredicted RBP eCLIP15.76■□□□□ 0.11
RPE-207ENST00000435437 SNAPC4Q5SXM2 1469 aa15.75■□□□□ 0.11
RPE-207ENST00000435437 PBRM1Q86U86 1689 aa15.75■□□□□ 0.11
RPE-207ENST00000435437 RIMBP3CA6NJZ7 1639 aa15.71■□□□□ 0.11
RPE-207ENST00000435437 RIMBP3BA6NNM3 1639 aa15.71■□□□□ 0.11
RPE-207ENST00000435437 RIMBP3Q9UFD9 1639 aa15.71■□□□□ 0.11
RPE-207ENST00000435437 GRIN2BQ13224 1484 aa15.7■□□□□ 0.1
RPE-207ENST00000435437 GAPVD1Q14C86 1478 aa15.69■□□□□ 0.1
RPE-207ENST00000435437 MAGI1Q96QZ7 1491 aaPredicted RBP15.68■□□□□ 0.1
RPE-207ENST00000435437 CLASP1Q7Z460 1538 aa15.66■□□□□ 0.1
RPE-207ENST00000435437 ARHGEF11O15085 1522 aa15.65■□□□□ 0.1
RPE-207ENST00000435437 SYNJ2O15056 1496 aa15.63■□□□□ 0.09
RPE-207ENST00000435437 ADAMTS12P58397 1594 aa15.61■□□□□ 0.09
RPE-207ENST00000435437 FBLN2P98095 1184 aa15.59■□□□□ 0.09
RPE-207ENST00000435437 TRIM41Q8WV44 630 aa15.58■□□□□ 0.08
RPE-207ENST00000435437 ARAP1Q96P48 1450 aa15.56■□□□□ 0.08
RPE-207ENST00000435437 CEP170Q5SW79 1584 aa15.55■□□□□ 0.08
RPE-207ENST00000435437 ERICH3Q5RHP9 1530 aa15.54■□□□□ 0.08
RPE-207ENST00000435437 GRIN2AQ12879 1464 aa15.53■□□□□ 0.08
RPE-207ENST00000435437 CHMP7Q8WUX9 453 aaPredicted RBP15.53■□□□□ 0.08
RPE-207ENST00000435437 NUP160Q12769 1436 aa15.51■□□□□ 0.07
RPE-207ENST00000435437 ERCC6L2Q5T890 1561 aa15.5■□□□□ 0.07
RPE-207ENST00000435437 FHAD1B1AJZ9 1412 aa15.5■□□□□ 0.07
RPE-207ENST00000435437 SHROOM2Q13796 1616 aa15.46■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms