RNA–Protein interactions for RNA: ENST00000578896.1

GGA3-207, Transcript of golgi associated, gamma adaptin ear containing, ARF binding protein 3, humanhuman

TSL 5

Gene GGA3, Length 439 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GGA3-207ENST00000578896 NISCHQ9Y2I1 1504 aa22.31■■□□□ 1.16
GGA3-207ENST00000578896 ABCC9O60706 1549 aa20.08■□□□□ 0.81
GGA3-207ENST00000578896 CCDC180Q9P1Z9 1646 aa19.93■□□□□ 0.78
GGA3-207ENST00000578896 RB1CC1Q8TDY2 1594 aa19.01■□□□□ 0.63
GGA3-207ENST00000578896 DCAF8L2P0C7V8 631 aa19■□□□□ 0.63
GGA3-207ENST00000578896 DNAJC5BQ9UF47 199 aa18.88■□□□□ 0.61
GGA3-207ENST00000578896 NACADO15069 1562 aa18.86■□□□□ 0.61
GGA3-207ENST00000578896 PABPN1Q86U42 306 aaKnown RBP eCLIP18.76■□□□□ 0.59
GGA3-207ENST00000578896 UNC13AQ9UPW8 1703 aa18.65■□□□□ 0.58
GGA3-207ENST00000578896 MYO15BQ96JP2 1530 aa18.54■□□□□ 0.56
GGA3-207ENST00000578896 BICRAQ9NZM4 1560 aa18.51■□□□□ 0.55
GGA3-207ENST00000578896 ZCCHC6Q5VYS8 1495 aaKnown RBP18.47■□□□□ 0.55
GGA3-207ENST00000578896 DCAF1Q9Y4B6 1507 aa18.34■□□□□ 0.53
GGA3-207ENST00000578896 SCRIBQ14160 1630 aa18.3■□□□□ 0.52
GGA3-207ENST00000578896 SHROOM4Q9ULL8 1493 aa18.09■□□□□ 0.49
GGA3-207ENST00000578896 CC2D2AQ9P2K1 1620 aa18.09■□□□□ 0.49
GGA3-207ENST00000578896 CECR2Q9BXF3 1484 aa18.04■□□□□ 0.48
GGA3-207ENST00000578896 EIF4G1Q04637 1599 aaKnown RBP18.03■□□□□ 0.48
GGA3-207ENST00000578896 NCAPD3P42695 1498 aa17.44■□□□□ 0.38
GGA3-207ENST00000578896 ATAD2BQ9ULI0 1458 aa17.43■□□□□ 0.38
GGA3-207ENST00000578896 SMARCA4P51532 1647 aa17.39■□□□□ 0.38
GGA3-207ENST00000578896 SMARCA2P51531 1590 aa17.32■□□□□ 0.36
GGA3-207ENST00000578896 ERCC6Q03468 1493 aa17.29■□□□□ 0.36
GGA3-207ENST00000578896 BAZ1AQ9NRL2 1556 aaPredicted RBP17.28■□□□□ 0.36
GGA3-207ENST00000578896 HMGXB3Q12766 1538 aa17.27■□□□□ 0.36
GGA3-207ENST00000578896 NESP48681 1621 aa17.27■□□□□ 0.36
GGA3-207ENST00000578896 BAZ1BQ9UIG0 1483 aaKnown RBP17.25■□□□□ 0.35
GGA3-207ENST00000578896 MROH2BQ7Z745 1585 aa17.24■□□□□ 0.35
GGA3-207ENST00000578896 DNAJC5Q9H3Z4 198 aa17.24■□□□□ 0.35
GGA3-207ENST00000578896 CUX2O14529 1486 aa17.18■□□□□ 0.34
GGA3-207ENST00000578896 PEG3Q9GZU2 1588 aa17.17■□□□□ 0.34
GGA3-207ENST00000578896 WIZO95785 1651 aa17.05■□□□□ 0.32
GGA3-207ENST00000578896 LAMC3Q9Y6N6 1575 aa17.02■□□□□ 0.32
GGA3-207ENST00000578896 KIF21AQ7Z4S6 1674 aa17■□□□□ 0.31
GGA3-207ENST00000578896 THOC2Q8NI27 1593 aaKnown RBP16.99■□□□□ 0.31
GGA3-207ENST00000578896 PDS5BQ9NTI5 1447 aa16.95■□□□□ 0.3
GGA3-207ENST00000578896 CADPSQ9ULU8 1353 aa16.94■□□□□ 0.3
GGA3-207ENST00000578896 RSF1Q96T23 1441 aaPredicted RBP16.88■□□□□ 0.29
GGA3-207ENST00000578896 MRC2Q9UBG0 1479 aa16.81■□□□□ 0.28
GGA3-207ENST00000578896 TOP2AP11388 1531 aaKnown RBP16.76■□□□□ 0.27
GGA3-207ENST00000578896 FANCD2Q9BXW9 1451 aa16.76■□□□□ 0.27
GGA3-207ENST00000578896 CEP164Q9UPV0 1460 aa16.75■□□□□ 0.27
GGA3-207ENST00000578896 WDR62O43379 1518 aa16.75■□□□□ 0.27
GGA3-207ENST00000578896 CFTRP13569 1480 aa16.73■□□□□ 0.27
GGA3-207ENST00000578896 URB2Q14146 1524 aaKnown RBP16.64■□□□□ 0.25
GGA3-207ENST00000578896 CCDC88BA6NC98 1476 aa16.63■□□□□ 0.25
GGA3-207ENST00000578896 TRIM41Q8WV44 630 aa16.59■□□□□ 0.25
GGA3-207ENST00000578896 PRDM2Q13029 1718 aa16.54■□□□□ 0.24
GGA3-207ENST00000578896 OSCARQ8IYS5 282 aa16.48■□□□□ 0.23
GGA3-207ENST00000578896 ZNF608Q9ULD9 1512 aaPredicted RBP16.46■□□□□ 0.23
GGA3-207ENST00000578896 TOPBP1Q92547 1522 aa16.45■□□□□ 0.22
GGA3-207ENST00000578896 IFT140Q96RY7 1462 aa16.41■□□□□ 0.22
GGA3-207ENST00000578896 DNMBPQ6XZF7 1577 aa16.35■□□□□ 0.21
GGA3-207ENST00000578896 ABCC8Q09428 1581 aa16.34■□□□□ 0.21
GGA3-207ENST00000578896 AQRO60306 1485 aaKnown RBP eCLIP16.32■□□□□ 0.27e-14■□□□□ 8.3
GGA3-207ENST00000578896 EIF4G3O43432 1585 aaKnown RBP16.31■□□□□ 0.2
GGA3-207ENST00000578896 RAD54L2Q9Y4B4 1467 aa16.29■□□□□ 0.2
GGA3-207ENST00000578896 TARBP1Q13395 1621 aaKnown RBP16.28■□□□□ 0.2
GGA3-207ENST00000578896 SUPT5HO00267 1087 aaKnown RBP16.28■□□□□ 0.2
GGA3-207ENST00000578896 POLA1P09884 1462 aaPredicted RBP16.28■□□□□ 0.2
GGA3-207ENST00000578896 FBLN2P98095 1184 aa16.26■□□□□ 0.19
GGA3-207ENST00000578896 RIMBP3CA6NJZ7 1639 aa16.26■□□□□ 0.19
GGA3-207ENST00000578896 RIMBP3BA6NNM3 1639 aa16.26■□□□□ 0.19
GGA3-207ENST00000578896 RIMBP3Q9UFD9 1639 aa16.26■□□□□ 0.19
GGA3-207ENST00000578896 TDRD9Q8NDG6 1382 aaKnown RBP16.24■□□□□ 0.19
GGA3-207ENST00000578896 SOGA1O94964 1423 aa16.22■□□□□ 0.19
GGA3-207ENST00000578896 CHD1O14646 1710 aa16.22■□□□□ 0.19
GGA3-207ENST00000578896 ARHGEF11O15085 1522 aa16.19■□□□□ 0.18
GGA3-207ENST00000578896 FGD5Q6ZNL6 1462 aa16.19■□□□□ 0.18
GGA3-207ENST00000578896 CUX1P39880 1505 aa16.19■□□□□ 0.18
GGA3-207ENST00000578896 CYB5RLQ6IPT4 315 aa16.16■□□□□ 0.18
GGA3-207ENST00000578896 SNAPC4Q5SXM2 1469 aa16.12■□□□□ 0.17
GGA3-207ENST00000578896 CHMP7Q8WUX9 453 aaPredicted RBP16.08■□□□□ 0.16
GGA3-207ENST00000578896 ARAP1Q96P48 1450 aa16.05■□□□□ 0.16
GGA3-207ENST00000578896 GRIN2BQ13224 1484 aa16.04■□□□□ 0.16
GGA3-207ENST00000578896 WDR97A6NE52 1622 aa16.02■□□□□ 0.16
GGA3-207ENST00000578896 GAPVD1Q14C86 1478 aa16.01■□□□□ 0.15
GGA3-207ENST00000578896 MAGI1Q96QZ7 1491 aaPredicted RBP16.01■□□□□ 0.15
GGA3-207ENST00000578896 PBRM1Q86U86 1689 aa15.99■□□□□ 0.15
GGA3-207ENST00000578896 CLASP1Q7Z460 1538 aa15.99■□□□□ 0.15
GGA3-207ENST00000578896 SYNJ2O15056 1496 aa15.97■□□□□ 0.15
GGA3-207ENST00000578896 TRHP20396 242 aaPredicted RBP15.97■□□□□ 0.15
GGA3-207ENST00000578896 ABCA10Q8WWZ4 1543 aa15.97■□□□□ 0.15
GGA3-207ENST00000578896 SYNJ1O43426 1573 aa15.96■□□□□ 0.15
GGA3-207ENST00000578896 ABCA5Q8WWZ7 1642 aa15.94■□□□□ 0.14
GGA3-207ENST00000578896 WRNQ14191 1432 aaPredicted RBP eCLIP15.91■□□□□ 0.14
GGA3-207ENST00000578896 TOP2BQ02880 1626 aa15.89■□□□□ 0.13
GGA3-207ENST00000578896 BIVM-ERCC5R4GMW8 1640 aa15.88■□□□□ 0.13
GGA3-207ENST00000578896 GRIN2AQ12879 1464 aa15.84■□□□□ 0.13
GGA3-207ENST00000578896 ADAMTS12P58397 1594 aa15.83■□□□□ 0.12
GGA3-207ENST00000578896 ERCC6L2Q5T890 1561 aa15.83■□□□□ 0.12
GGA3-207ENST00000578896 CEP170Q5SW79 1584 aa15.8■□□□□ 0.12
GGA3-207ENST00000578896 FHAD1B1AJZ9 1412 aa15.78■□□□□ 0.12
GGA3-207ENST00000578896 NUP160Q12769 1436 aa15.77■□□□□ 0.12
GGA3-207ENST00000578896 ERICH3Q5RHP9 1530 aa15.74■□□□□ 0.11
GGA3-207ENST00000578896 SHROOM2Q13796 1616 aa15.68■□□□□ 0.1
GGA3-207ENST00000578896 JPH4Q96JJ6 628 aa15.68■□□□□ 0.1
GGA3-207ENST00000578896 PRG4Q92954 1404 aaPredicted RBP15.67■□□□□ 0.1
GGA3-207ENST00000578896 IGF1RP08069 1367 aa15.62■□□□□ 0.09
GGA3-207ENST00000578896 RUSC2Q8N2Y8 1516 aa15.59■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms