RNA–Protein interactions for RNA: ENST00000580799.2

GGA3-210, Transcript of golgi associated, gamma adaptin ear containing, ARF binding protein 3, humanhuman

TSL 5

Gene GGA3, Length 521 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GGA3-210ENST00000580799 NISCHQ9Y2I1 1504 aa25.98■■□□□ 1.75
GGA3-210ENST00000580799 CCDC180Q9P1Z9 1646 aa23.43■■□□□ 1.34
GGA3-210ENST00000580799 ABCC9O60706 1549 aa23.39■■□□□ 1.34
GGA3-210ENST00000580799 RB1CC1Q8TDY2 1594 aa22.31■■□□□ 1.16
GGA3-210ENST00000580799 NACADO15069 1562 aa22.14■■□□□ 1.13
GGA3-210ENST00000580799 DNAJC5BQ9UF47 199 aa21.97■■□□□ 1.11
GGA3-210ENST00000580799 DCAF8L2P0C7V8 631 aa21.87■■□□□ 1.09
GGA3-210ENST00000580799 MYO15BQ96JP2 1530 aa21.83■■□□□ 1.09
GGA3-210ENST00000580799 UNC13AQ9UPW8 1703 aa21.79■■□□□ 1.08
GGA3-210ENST00000580799 PABPN1Q86U42 306 aaKnown RBP eCLIP21.71■■□□□ 1.07
GGA3-210ENST00000580799 BICRAQ9NZM4 1560 aa21.63■■□□□ 1.05
GGA3-210ENST00000580799 ZCCHC6Q5VYS8 1495 aaKnown RBP21.52■■□□□ 1.03
GGA3-210ENST00000580799 DCAF1Q9Y4B6 1507 aa21.5■■□□□ 1.03
GGA3-210ENST00000580799 SHROOM4Q9ULL8 1493 aa21.41■■□□□ 1.02
GGA3-210ENST00000580799 SCRIBQ14160 1630 aa21.25■□□□□ 0.99
GGA3-210ENST00000580799 CC2D2AQ9P2K1 1620 aa21.17■□□□□ 0.98
GGA3-210ENST00000580799 EIF4G1Q04637 1599 aaKnown RBP21.11■□□□□ 0.97
GGA3-210ENST00000580799 CECR2Q9BXF3 1484 aa21.11■□□□□ 0.97
GGA3-210ENST00000580799 NCAPD3P42695 1498 aa20.42■□□□□ 0.86
GGA3-210ENST00000580799 ATAD2BQ9ULI0 1458 aa20.31■□□□□ 0.84
GGA3-210ENST00000580799 DNAJC5Q9H3Z4 198 aa20.31■□□□□ 0.84
GGA3-210ENST00000580799 SMARCA2P51531 1590 aa20.3■□□□□ 0.84
GGA3-210ENST00000580799 SMARCA4P51532 1647 aa20.3■□□□□ 0.84
GGA3-210ENST00000580799 HMGXB3Q12766 1538 aa20.28■□□□□ 0.84
GGA3-210ENST00000580799 CUX2O14529 1486 aa20.27■□□□□ 0.84
GGA3-210ENST00000580799 ERCC6Q03468 1493 aa20.24■□□□□ 0.83
GGA3-210ENST00000580799 BAZ1AQ9NRL2 1556 aaPredicted RBP20.2■□□□□ 0.82
GGA3-210ENST00000580799 PEG3Q9GZU2 1588 aa20.13■□□□□ 0.81
GGA3-210ENST00000580799 BAZ1BQ9UIG0 1483 aaKnown RBP20.12■□□□□ 0.81
GGA3-210ENST00000580799 NESP48681 1621 aa20.06■□□□□ 0.8
GGA3-210ENST00000580799 LAMC3Q9Y6N6 1575 aa20■□□□□ 0.79
GGA3-210ENST00000580799 MROH2BQ7Z745 1585 aa19.99■□□□□ 0.79
GGA3-210ENST00000580799 THOC2Q8NI27 1593 aaKnown RBP19.94■□□□□ 0.78
GGA3-210ENST00000580799 KIF21AQ7Z4S6 1674 aa19.86■□□□□ 0.77
GGA3-210ENST00000580799 PDS5BQ9NTI5 1447 aa19.85■□□□□ 0.77
GGA3-210ENST00000580799 CADPSQ9ULU8 1353 aa19.76■□□□□ 0.75
GGA3-210ENST00000580799 WIZO95785 1651 aa19.75■□□□□ 0.75
GGA3-210ENST00000580799 MRC2Q9UBG0 1479 aa19.68■□□□□ 0.74
GGA3-210ENST00000580799 WDR62O43379 1518 aa19.66■□□□□ 0.74
GGA3-210ENST00000580799 CEP164Q9UPV0 1460 aa19.6■□□□□ 0.73
GGA3-210ENST00000580799 FANCD2Q9BXW9 1451 aa19.54■□□□□ 0.72
GGA3-210ENST00000580799 CFTRP13569 1480 aa19.54■□□□□ 0.72
GGA3-210ENST00000580799 RSF1Q96T23 1441 aaPredicted RBP19.53■□□□□ 0.72
GGA3-210ENST00000580799 TOP2AP11388 1531 aaKnown RBP19.52■□□□□ 0.72
GGA3-210ENST00000580799 PRDM2Q13029 1718 aa19.39■□□□□ 0.7
GGA3-210ENST00000580799 URB2Q14146 1524 aaKnown RBP19.38■□□□□ 0.69
GGA3-210ENST00000580799 TRIM41Q8WV44 630 aa19.33■□□□□ 0.68
GGA3-210ENST00000580799 OSCARQ8IYS5 282 aa19.28■□□□□ 0.68
GGA3-210ENST00000580799 CCDC88BA6NC98 1476 aa19.27■□□□□ 0.67
GGA3-210ENST00000580799 IFT140Q96RY7 1462 aa19.2■□□□□ 0.66
GGA3-210ENST00000580799 ABCC8Q09428 1581 aa19.17■□□□□ 0.66
GGA3-210ENST00000580799 TOPBP1Q92547 1522 aa19.16■□□□□ 0.66
GGA3-210ENST00000580799 ZNF608Q9ULD9 1512 aaPredicted RBP19.13■□□□□ 0.65
GGA3-210ENST00000580799 DNMBPQ6XZF7 1577 aa19.11■□□□□ 0.65
GGA3-210ENST00000580799 EIF4G3O43432 1585 aaKnown RBP19.08■□□□□ 0.65
GGA3-210ENST00000580799 RIMBP3CA6NJZ7 1639 aa19.06■□□□□ 0.64
GGA3-210ENST00000580799 RIMBP3BA6NNM3 1639 aa19.06■□□□□ 0.64
GGA3-210ENST00000580799 RIMBP3Q9UFD9 1639 aa19.06■□□□□ 0.64
GGA3-210ENST00000580799 TARBP1Q13395 1621 aaKnown RBP19.03■□□□□ 0.64
GGA3-210ENST00000580799 ARHGEF11O15085 1522 aa18.99■□□□□ 0.63
GGA3-210ENST00000580799 POLA1P09884 1462 aaPredicted RBP18.97■□□□□ 0.63
GGA3-210ENST00000580799 CHD1O14646 1710 aa18.95■□□□□ 0.62
GGA3-210ENST00000580799 AQRO60306 1485 aaKnown RBP eCLIP18.95■□□□□ 0.622e-7■■■■□ 23.3
GGA3-210ENST00000580799 WDR97A6NE52 1622 aa18.89■□□□□ 0.61
GGA3-210ENST00000580799 SOGA1O94964 1423 aa18.86■□□□□ 0.61
GGA3-210ENST00000580799 RAD54L2Q9Y4B4 1467 aa18.85■□□□□ 0.61
GGA3-210ENST00000580799 FGD5Q6ZNL6 1462 aa18.83■□□□□ 0.6
GGA3-210ENST00000580799 FBLN2P98095 1184 aa18.82■□□□□ 0.6
GGA3-210ENST00000580799 TDRD9Q8NDG6 1382 aaKnown RBP18.81■□□□□ 0.6
GGA3-210ENST00000580799 CYB5RLQ6IPT4 315 aa18.8■□□□□ 0.6
GGA3-210ENST00000580799 CUX1P39880 1505 aa18.79■□□□□ 0.6
GGA3-210ENST00000580799 ARAP1Q96P48 1450 aa18.77■□□□□ 0.6
GGA3-210ENST00000580799 SNAPC4Q5SXM2 1469 aa18.77■□□□□ 0.59
GGA3-210ENST00000580799 MAGI1Q96QZ7 1491 aaPredicted RBP18.77■□□□□ 0.59
GGA3-210ENST00000580799 GRIN2BQ13224 1484 aa18.74■□□□□ 0.59
GGA3-210ENST00000580799 CLASP1Q7Z460 1538 aa18.74■□□□□ 0.59
GGA3-210ENST00000580799 SYNJ1O43426 1573 aa18.72■□□□□ 0.59
GGA3-210ENST00000580799 CHMP7Q8WUX9 453 aaPredicted RBP18.7■□□□□ 0.58
GGA3-210ENST00000580799 SYNJ2O15056 1496 aa18.7■□□□□ 0.58
GGA3-210ENST00000580799 PBRM1Q86U86 1689 aa18.67■□□□□ 0.58
GGA3-210ENST00000580799 GAPVD1Q14C86 1478 aa18.65■□□□□ 0.58
GGA3-210ENST00000580799 TRHP20396 242 aaPredicted RBP18.63■□□□□ 0.57
GGA3-210ENST00000580799 ABCA10Q8WWZ4 1543 aa18.63■□□□□ 0.57
GGA3-210ENST00000580799 ABCA5Q8WWZ7 1642 aa18.63■□□□□ 0.57
GGA3-210ENST00000580799 SUPT5HO00267 1087 aaKnown RBP18.54■□□□□ 0.56
GGA3-210ENST00000580799 WRNQ14191 1432 aaPredicted RBP eCLIP18.54■□□□□ 0.56
GGA3-210ENST00000580799 BIVM-ERCC5R4GMW8 1640 aa18.52■□□□□ 0.55
GGA3-210ENST00000580799 TOP2BQ02880 1626 aa18.5■□□□□ 0.55
GGA3-210ENST00000580799 GRIN2AQ12879 1464 aa18.5■□□□□ 0.55
GGA3-210ENST00000580799 ADAMTS12P58397 1594 aa18.47■□□□□ 0.55
GGA3-210ENST00000580799 NUP160Q12769 1436 aa18.43■□□□□ 0.54
GGA3-210ENST00000580799 CEP170Q5SW79 1584 aa18.42■□□□□ 0.54
GGA3-210ENST00000580799 ERICH3Q5RHP9 1530 aa18.42■□□□□ 0.54
GGA3-210ENST00000580799 FHAD1B1AJZ9 1412 aa18.41■□□□□ 0.54
GGA3-210ENST00000580799 SHROOM2Q13796 1616 aa18.39■□□□□ 0.53
GGA3-210ENST00000580799 ERCC6L2Q5T890 1561 aa18.38■□□□□ 0.53
GGA3-210ENST00000580799 PRG4Q92954 1404 aaPredicted RBP18.24■□□□□ 0.51
GGA3-210ENST00000580799 RUSC2Q8N2Y8 1516 aa18.23■□□□□ 0.51
GGA3-210ENST00000580799 JPH4Q96JJ6 628 aa18.2■□□□□ 0.5
GGA3-210ENST00000580799 KIF13AQ9H1H9 1805 aa18.17■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 1672.3 ms