RNA–Protein interactions for RNA: ENST00000621870.4

GGA3-223, Transcript of golgi associated, gamma adaptin ear containing, ARF binding protein 3, humanhuman

TSL 1 (best)

Gene GGA3, Length 4,034 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GGA3-223ENST00000621870 DCAF8L2P0C7V8 631 aa16.98■□□□□ 0.31
GGA3-223ENST00000621870 NISCHQ9Y2I1 1504 aa16.35■□□□□ 0.21
GGA3-223ENST00000621870 SUPT5HO00267 1087 aaKnown RBP15.78■□□□□ 0.12
GGA3-223ENST00000621870 SHROOM4Q9ULL8 1493 aa15.67■□□□□ 0.1
GGA3-223ENST00000621870 EHMT2Q96KQ7 1210 aa15.25■□□□□ 0.03
GGA3-223ENST00000621870 FAM9AQ8IZU1 332 aaPredicted RBP14.89□□□□□ -0.03
GGA3-223ENST00000621870 APLP2Q06481 763 aa14.71□□□□□ -0.05
GGA3-223ENST00000621870 RANGAP1P46060 587 aaPredicted RBP14.68□□□□□ -0.06
GGA3-223ENST00000621870 TTBK1Q5TCY1 1321 aaPredicted RBP14.63□□□□□ -0.07
GGA3-223ENST00000621870 TRIM41Q8WV44 630 aa14.57□□□□□ -0.08
GGA3-223ENST00000621870 ATP1B4Q9UN42 357 aaPredicted RBP14.49□□□□□ -0.09
GGA3-223ENST00000621870 ABCC9O60706 1549 aa14.45□□□□□ -0.1
GGA3-223ENST00000621870 UBTFP17480 764 aaKnown RBP14.42□□□□□ -0.1
GGA3-223ENST00000621870 PABPN1Q86U42 306 aaKnown RBP eCLIP14.36□□□□□ -0.11
GGA3-223ENST00000621870 PCGF6Q9BYE7 350 aa14.26□□□□□ -0.13
GGA3-223ENST00000621870 PPARGC1BQ86YN6 1023 aaKnown RBP14.12□□□□□ -0.15
GGA3-223ENST00000621870 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.08□□□□□ -0.15
GGA3-223ENST00000621870 HNRNPUL2Q1KMD3 747 aaKnown RBP14.08□□□□□ -0.15
GGA3-223ENST00000621870 CCER1Q8TC90 406 aaPredicted RBP14.02□□□□□ -0.17
GGA3-223ENST00000621870 MYT1LQ9UL68 1186 aa13.98□□□□□ -0.17
GGA3-223ENST00000621870 LOC105371045A0A1W2PR82 267 aa13.95□□□□□ -0.18
GGA3-223ENST00000621870 CHIC1Q5VXU3 224 aa13.94□□□□□ -0.18
GGA3-223ENST00000621870 ITGAEP38570 1179 aa13.93□□□□□ -0.18
GGA3-223ENST00000621870 FBLN2P98095 1184 aa13.81□□□□□ -0.2
GGA3-223ENST00000621870 ZEB1P37275 1124 aaPredicted RBP13.72□□□□□ -0.21
GGA3-223ENST00000621870 PELP1Q8IZL8 1130 aaKnown RBP13.7□□□□□ -0.22
GGA3-223ENST00000621870 TRIM26Q12899 539 aaPredicted RBP13.65□□□□□ -0.22
GGA3-223ENST00000621870 POLR3GLQ9BT43 218 aa13.62□□□□□ -0.23
GGA3-223ENST00000621870 SCRIBQ14160 1630 aa13.62□□□□□ -0.23
GGA3-223ENST00000621870 FAM50AQ14320 339 aaKnown RBP13.56□□□□□ -0.24
GGA3-223ENST00000621870 ARID3CA6NKF2 412 aa13.55□□□□□ -0.24
GGA3-223ENST00000621870 CNGB1Q14028 1251 aaPredicted RBP13.55□□□□□ -0.24
GGA3-223ENST00000621870 P3H3Q8IVL6 736 aa13.55□□□□□ -0.24
GGA3-223ENST00000621870 YTHDC1Q96MU7 727 aaKnown RBP13.5□□□□□ -0.25
GGA3-223ENST00000621870 CENPBP07199 599 aaPredicted RBP13.5□□□□□ -0.25
GGA3-223ENST00000621870 HRCP23327 699 aa13.48□□□□□ -0.25
GGA3-223ENST00000621870 ZCCHC6Q5VYS8 1495 aaKnown RBP13.46□□□□□ -0.25
GGA3-223ENST00000621870 CSRNP3Q8WYN3 585 aa13.46□□□□□ -0.26
GGA3-223ENST00000621870 TRIM52Q96A61 297 aa13.45□□□□□ -0.26
GGA3-223ENST00000621870 SLC4A1APQ9BWU0 796 aaKnown RBP13.42□□□□□ -0.26
GGA3-223ENST00000621870 NEFLP07196 543 aa13.34□□□□□ -0.27
GGA3-223ENST00000621870 ZNF777Q9ULD5 760 aaPredicted RBP13.33□□□□□ -0.28
GGA3-223ENST00000621870 NEUROD1Q13562 356 aa13.32□□□□□ -0.28
GGA3-223ENST00000621870 CCDC180Q9P1Z9 1646 aa13.31□□□□□ -0.28
GGA3-223ENST00000621870 ZNF326Q5BKZ1 582 aaKnown RBP13.3□□□□□ -0.28
GGA3-223ENST00000621870 RB1CC1Q8TDY2 1594 aa13.27□□□□□ -0.29
GGA3-223ENST00000621870 NPM1P06748 294 aaKnown RBP eCLIP13.26□□□□□ -0.29
GGA3-223ENST00000621870 CDK11AQ9UQ88 783 aaPredicted RBP13.25□□□□□ -0.29
GGA3-223ENST00000621870 CHMP7Q8WUX9 453 aaPredicted RBP13.22□□□□□ -0.29
GGA3-223ENST00000621870 BCANQ96GW7 911 aa13.2□□□□□ -0.3
GGA3-223ENST00000621870 PLPPR3Q6T4P5 718 aa13.19□□□□□ -0.3
GGA3-223ENST00000621870 ESF1Q9H501 851 aaKnown RBP13.15□□□□□ -0.3
GGA3-223ENST00000621870 ERICH6Q7L0X2 663 aa13.15□□□□□ -0.3
GGA3-223ENST00000621870 NACADO15069 1562 aa13.11□□□□□ -0.31
GGA3-223ENST00000621870 RSF1Q96T23 1441 aaPredicted RBP13.08□□□□□ -0.32
GGA3-223ENST00000621870 CHGAP10645 457 aaKnown RBP13.08□□□□□ -0.32
GGA3-223ENST00000621870 CHIC2Q9UKJ5 165 aa13.05□□□□□ -0.32
GGA3-223ENST00000621870 BAZ1BQ9UIG0 1483 aaKnown RBP13.04□□□□□ -0.32
GGA3-223ENST00000621870 MYT1Q01538 1121 aa13.03□□□□□ -0.32
GGA3-223ENST00000621870 DIEXFQ68CQ4 756 aaKnown RBP13.03□□□□□ -0.32
GGA3-223ENST00000621870 STAG3Q9UJ98 1225 aa13.03□□□□□ -0.32
GGA3-223ENST00000621870 KCNH8Q96L42 1107 aa13.03□□□□□ -0.32
GGA3-223ENST00000621870 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.01□□□□□ -0.332e-7■■■□□ 16.1
GGA3-223ENST00000621870 TSPY4P0CV99 314 aa12.98□□□□□ -0.33
GGA3-223ENST00000621870 TSPY10P0CW01 314 aa12.98□□□□□ -0.33
GGA3-223ENST00000621870 ERCC6Q03468 1493 aa12.97□□□□□ -0.33
GGA3-223ENST00000621870 CECR2Q9BXF3 1484 aa12.97□□□□□ -0.33
GGA3-223ENST00000621870 MTUS2Q5JR59 1369 aa12.96□□□□□ -0.33
GGA3-223ENST00000621870 SLC24A1O60721 1099 aa12.94□□□□□ -0.34
GGA3-223ENST00000621870 WRNQ14191 1432 aaPredicted RBP eCLIP12.93□□□□□ -0.34
GGA3-223ENST00000621870 PLEKHD1A6NEE1 506 aa12.91□□□□□ -0.34
GGA3-223ENST00000621870 ANP32CO43423 234 aa12.91□□□□□ -0.34
GGA3-223ENST00000621870 SENP3Q9H4L4 574 aaPredicted RBP12.89□□□□□ -0.35
GGA3-223ENST00000621870 CLIP1P30622 1438 aa12.88□□□□□ -0.35
GGA3-223ENST00000621870 CLSPNQ9HAW4 1339 aa12.86□□□□□ -0.35
GGA3-223ENST00000621870 DAXXQ9UER7 740 aaPredicted RBP12.85□□□□□ -0.35
GGA3-223ENST00000621870 BAZ1AQ9NRL2 1556 aaPredicted RBP12.85□□□□□ -0.35
GGA3-223ENST00000621870 TONSLQ96HA7 1378 aa12.84□□□□□ -0.35
GGA3-223ENST00000621870 KIF27Q86VH2 1401 aa12.84□□□□□ -0.35
GGA3-223ENST00000621870 RRP7BPQ9NSQ0 103 aa12.83□□□□□ -0.36
GGA3-223ENST00000621870 KDM2AQ9Y2K7 1162 aa12.83□□□□□ -0.36
GGA3-223ENST00000621870 DCAF1Q9Y4B6 1507 aa12.82□□□□□ -0.36
GGA3-223ENST00000621870 NEFMP07197 916 aa12.82□□□□□ -0.36
GGA3-223ENST00000621870 ZNF316A6NFI3 1004 aaPredicted RBP12.81□□□□□ -0.36
GGA3-223ENST00000621870 BCL11AQ9H165 835 aa12.81□□□□□ -0.36
GGA3-223ENST00000621870 ARID4BQ4LE39 1312 aaPredicted RBP12.79□□□□□ -0.36
GGA3-223ENST00000621870 TRHP20396 242 aaPredicted RBP12.78□□□□□ -0.36
GGA3-223ENST00000621870 CFDP1Q9UEE9 299 aaPredicted RBP12.78□□□□□ -0.36
GGA3-223ENST00000621870 EEA1Q15075 1411 aa12.75□□□□□ -0.37
GGA3-223ENST00000621870 PLEKHG5O94827 1062 aa12.73□□□□□ -0.37
GGA3-223ENST00000621870 RGL3Q3MIN7 710 aa12.73□□□□□ -0.37
GGA3-223ENST00000621870 MYO15BQ96JP2 1530 aa12.73□□□□□ -0.37
GGA3-223ENST00000621870 GOLGA3Q08378 1498 aa12.72□□□□□ -0.37
GGA3-223ENST00000621870 CEP162Q5TB80 1403 aa12.71□□□□□ -0.37
GGA3-223ENST00000621870 MROH2BQ7Z745 1585 aa12.71□□□□□ -0.37
GGA3-223ENST00000621870 CUX2O14529 1486 aa12.71□□□□□ -0.37
GGA3-223ENST00000621870 TDRD9Q8NDG6 1382 aaKnown RBP12.71□□□□□ -0.37
GGA3-223ENST00000621870 PPP1R15AO75807 674 aaPredicted RBP12.71□□□□□ -0.37
GGA3-223ENST00000621870 DDX10Q13206 875 aaKnown RBP12.7□□□□□ -0.38
GGA3-223ENST00000621870 CARMIL1Q5VZK9 1371 aa12.7□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms