Protein–RNA interactions for Protein: Q9UN74

PCDHA4, Protocadherin alpha-4, humanhuman

Predictions only

Length 947 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA4Q9UN74 KANSL2-215ENST00000553086 1830 ntTSL 5 BASIC28.21■■■□□ 2.11
PCDHA4Q9UN74 SENP3-201ENST00000321337 2611 ntAPPRIS P1 TSL 1 (best) BASIC28.21■■■□□ 2.11
PCDHA4Q9UN74 LTC4S-205ENST00000486713 496 ntTSL 2 BASIC28.21■■■□□ 2.11
PCDHA4Q9UN74 AP000911.3-201ENST00000526377 1130 ntTSL 3 BASIC28.21■■■□□ 2.11
PCDHA4Q9UN74 CCDC136-202ENST00000378685 1689 ntAPPRIS ALT2 TSL 2 BASIC28.21■■■□□ 2.11
PCDHA4Q9UN74 TTC36-201ENST00000302783 874 ntAPPRIS P1 TSL 1 (best) BASIC28.2■■■□□ 2.1
PCDHA4Q9UN74 AGO3-204ENST00000397828 1035 ntTSL 2 BASIC28.2■■■□□ 2.1
PCDHA4Q9UN74 UBALD1-203ENST00000587649 707 ntTSL 3 BASIC28.2■■■□□ 2.1
PCDHA4Q9UN74 DHFR-203ENST00000505337 1719 ntAPPRIS P1 TSL 2 BASIC28.2■■■□□ 2.1
PCDHA4Q9UN74 GNG10-201ENST00000374293 1491 ntAPPRIS P1 TSL 1 (best) BASIC28.2■■■□□ 2.1
PCDHA4Q9UN74 SP8-202ENST00000418710 1618 ntAPPRIS ALT2 TSL 1 (best) BASIC28.19■■■□□ 2.1
PCDHA4Q9UN74 TTC3-225ENST00000540756 2025 ntTSL 2 BASIC28.19■■■□□ 2.1
PCDHA4Q9UN74 CCKBR-201ENST00000334619 2121 ntAPPRIS P1 TSL 1 (best) BASIC28.19■■■□□ 2.1
PCDHA4Q9UN74 C19orf47-202ENST00000392035 2126 ntAPPRIS ALT2 TSL 1 (best) BASIC28.19■■■□□ 2.1
PCDHA4Q9UN74 DAZAP1-202ENST00000336761 2290 ntTSL 5 BASIC28.18■■■□□ 2.1
PCDHA4Q9UN74 KCNJ4-201ENST00000303592 2065 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
PCDHA4Q9UN74 IGFBP2-201ENST00000233809 1439 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
PCDHA4Q9UN74 PTGER1-201ENST00000292513 1421 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
PCDHA4Q9UN74 ZDHHC3-203ENST00000342790 1336 ntTSL 5 BASIC28.18■■■□□ 2.1
PCDHA4Q9UN74 ECEL1P2-201ENST00000461596 1295 ntBASIC28.17■■■□□ 2.1
PCDHA4Q9UN74 VSTM2L-202ENST00000373461 1959 ntAPPRIS P1 TSL 1 (best) BASIC28.17■■■□□ 2.1
PCDHA4Q9UN74 RASSF5-204ENST00000580449 1932 ntTSL 1 (best) BASIC28.16■■■□□ 2.1
PCDHA4Q9UN74 LCNL1-201ENST00000408973 1839 ntAPPRIS P1 TSL 2 BASIC28.16■■■□□ 2.1
PCDHA4Q9UN74 HES4-202ENST00000428771 1040 ntTSL 2 BASIC28.16■■■□□ 2.1
PCDHA4Q9UN74 C11orf80-204ENST00000525908 2135 ntAPPRIS P3 TSL 2 BASIC28.16■■■□□ 2.1
PCDHA4Q9UN74 FAM107B-205ENST00000378467 2374 ntAPPRIS P1 TSL 1 (best) BASIC28.16■■■□□ 2.1
PCDHA4Q9UN74 CCND3-205ENST00000415497 1843 ntTSL 2 BASIC28.15■■■□□ 2.1
PCDHA4Q9UN74 SLC25A10-202ENST00000350690 1885 ntAPPRIS P1 TSL 1 (best) BASIC28.15■■■□□ 2.1
PCDHA4Q9UN74 CTF1-202ENST00000395019 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC28.15■■■□□ 2.1
PCDHA4Q9UN74 HSD17B1P1-201ENST00000590052 955 ntBASIC28.15■■■□□ 2.1
PCDHA4Q9UN74 NRG2-203ENST00000340391 1944 ntTSL 5 BASIC28.15■■■□□ 2.1
PCDHA4Q9UN74 FLJ37453-201ENST00000317122 2473 ntTSL 2 BASIC28.15■■■□□ 2.1
PCDHA4Q9UN74 ABL1-201ENST00000318560 5766 ntTSL 1 (best) BASIC28.15■■■□□ 2.1
PCDHA4Q9UN74 MTMR1-202ENST00000370390 2755 ntAPPRIS P1 TSL 1 (best) BASIC28.15■■■□□ 2.1
PCDHA4Q9UN74 TYMP-201ENST00000252029 1630 ntAPPRIS P3 TSL 1 (best) BASIC28.14■■■□□ 2.1
PCDHA4Q9UN74 TYMP-203ENST00000395680 1608 ntAPPRIS P3 TSL 1 (best) BASIC28.14■■■□□ 2.1
PCDHA4Q9UN74 TYMP-204ENST00000395681 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC28.14■■■□□ 2.1
PCDHA4Q9UN74 RCOR3-202ENST00000367006 2525 ntTSL 1 (best) BASIC28.14■■■□□ 2.1
PCDHA4Q9UN74 AC025884.2-201ENST00000553429 711 ntBASIC28.14■■■□□ 2.1
PCDHA4Q9UN74 RSPH1-201ENST00000291536 1430 ntAPPRIS P1 TSL 1 (best) BASIC28.14■■■□□ 2.1
PCDHA4Q9UN74 MXD3-201ENST00000423571 1534 ntTSL 2 BASIC28.13■■■□□ 2.09
PCDHA4Q9UN74 TAZ-213ENST00000601016 1889 ntTSL 1 (best) BASIC28.13■■■□□ 2.09
PCDHA4Q9UN74 TMEM150A-201ENST00000306353 1484 ntTSL 1 (best) BASIC28.13■■■□□ 2.09
PCDHA4Q9UN74 C1QTNF5-202ENST00000528368 1356 ntAPPRIS P1 TSL 1 (best) BASIC28.12■■■□□ 2.09
PCDHA4Q9UN74 FBXL6-201ENST00000331890 1785 ntAPPRIS P3 TSL 1 (best) BASIC28.12■■■□□ 2.09
PCDHA4Q9UN74 AC068134.2-201ENST00000437095 576 ntTSL 3 BASIC28.12■■■□□ 2.09
PCDHA4Q9UN74 NME2-205ENST00000512737 826 ntAPPRIS P1 TSL 1 (best) BASIC28.12■■■□□ 2.09
PCDHA4Q9UN74 HTRA1-201ENST00000368984 2120 ntAPPRIS P1 TSL 1 (best) BASIC28.12■■■□□ 2.09
PCDHA4Q9UN74 NXPH3-201ENST00000328741 2179 ntAPPRIS P1 TSL 1 (best) BASIC28.11■■■□□ 2.09
PCDHA4Q9UN74 CDC16-211ENST00000628084 2058 ntTSL 5 BASIC28.11■■■□□ 2.09
PCDHA4Q9UN74 MDFIC-206ENST00000448022 484 ntTSL 2 BASIC28.11■■■□□ 2.09
PCDHA4Q9UN74 SLC9A3R2-201ENST00000424542 2194 ntAPPRIS P1 TSL 1 (best) BASIC28.11■■■□□ 2.09
PCDHA4Q9UN74 RAD51-208ENST00000532743 1515 ntTSL 2 BASIC28.11■■■□□ 2.09
PCDHA4Q9UN74 RNF126P1-201ENST00000567452 1320 ntBASIC28.11■■■□□ 2.09
PCDHA4Q9UN74 NXPH4-201ENST00000349394 1804 ntAPPRIS P1 TSL 1 (best) BASIC28.11■■■□□ 2.09
PCDHA4Q9UN74 RINL-208ENST00000598904 1846 ntAPPRIS P3 TSL 5 BASIC28.11■■■□□ 2.09
PCDHA4Q9UN74 SMPD5-203ENST00000639008 1464 ntBASIC28.1■■■□□ 2.09
PCDHA4Q9UN74 AGAP1-202ENST00000336665 5427 ntAPPRIS P3 TSL 1 (best) BASIC28.1■■■□□ 2.09
PCDHA4Q9UN74 R3HCC1-201ENST00000265806 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC28.09■■■□□ 2.09
PCDHA4Q9UN74 RPRML-201ENST00000322329 1093 ntAPPRIS P1 BASIC28.09■■■□□ 2.09
PCDHA4Q9UN74 PTPRF-216ENST00000617451 1129 ntTSL 5 BASIC28.09■■■□□ 2.09
PCDHA4Q9UN74 DHRS13-201ENST00000378895 1921 ntAPPRIS P1 TSL 1 (best) BASIC28.09■■■□□ 2.09
PCDHA4Q9UN74 ANKS3-203ENST00000450067 2272 ntTSL 5 BASIC28.09■■■□□ 2.09
PCDHA4Q9UN74 RTN2-208ENST00000590526 2357 ntTSL 5 BASIC28.09■■■□□ 2.09
PCDHA4Q9UN74 UPF3A-209ENST00000492270 494 ntTSL 2 BASIC28.08■■■□□ 2.09
PCDHA4Q9UN74 FOXO6-202ENST00000641094 1476 ntAPPRIS P1 BASIC28.08■■■□□ 2.09
PCDHA4Q9UN74 PEA15-201ENST00000360472 2471 ntAPPRIS P1 TSL 1 (best) BASIC28.08■■■□□ 2.09
PCDHA4Q9UN74 LAT-201ENST00000354453 1713 ntAPPRIS ALT2 TSL 5 BASIC28.07■■■□□ 2.08
PCDHA4Q9UN74 NKIRAS2-208ENST00000462043 585 ntTSL 4 BASIC28.07■■■□□ 2.08
PCDHA4Q9UN74 IGFBP7-201ENST00000295666 1427 ntAPPRIS P3 TSL 1 (best) BASIC28.07■■■□□ 2.08
PCDHA4Q9UN74 POU3F3-201ENST00000361360 3064 ntAPPRIS P1 BASIC28.07■■■□□ 2.08
PCDHA4Q9UN74 U2AF1-204ENST00000459639 1675 ntTSL 1 (best) BASIC28.07■■■□□ 2.08
PCDHA4Q9UN74 U2AF1L5-204ENST00000623375 1675 ntTSL 1 (best) BASIC28.07■■■□□ 2.08
PCDHA4Q9UN74 NRM-201ENST00000259953 1755 ntAPPRIS P2 TSL 2 BASIC28.06■■■□□ 2.08
PCDHA4Q9UN74 PQLC3-204ENST00000441908 1784 ntTSL 2 BASIC28.06■■■□□ 2.08
PCDHA4Q9UN74 CCND3-203ENST00000372991 2085 ntAPPRIS P1 TSL 1 (best) BASIC28.06■■■□□ 2.08
PCDHA4Q9UN74 LOR-201ENST00000368742 1230 ntAPPRIS P1 TSL 1 (best) BASIC28.06■■■□□ 2.08
PCDHA4Q9UN74 PFN2-211ENST00000489155 636 ntTSL 4 BASIC28.06■■■□□ 2.08
PCDHA4Q9UN74 REST-210ENST00000638187 1334 ntTSL 5 BASIC28.06■■■□□ 2.08
PCDHA4Q9UN74 HOXC9-201ENST00000303450 1516 ntAPPRIS P1 TSL 1 (best) BASIC28.06■■■□□ 2.08
PCDHA4Q9UN74 FSD1-201ENST00000221856 1831 ntAPPRIS P1 TSL 1 (best) BASIC28.06■■■□□ 2.08
PCDHA4Q9UN74 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC28.06■■■□□ 2.08
PCDHA4Q9UN74 RFLNA-205ENST00000546355 2354 ntAPPRIS ALT1 TSL 1 (best) BASIC28.06■■■□□ 2.08
PCDHA4Q9UN74 RUNDC3A-201ENST00000225441 1821 ntTSL 1 (best) BASIC28.05■■■□□ 2.08
PCDHA4Q9UN74 TM6SF1-204ENST00000379390 1638 ntTSL 1 (best) BASIC28.05■■■□□ 2.08
PCDHA4Q9UN74 RUNX1-205ENST00000399240 1590 ntTSL 3 BASIC28.05■■■□□ 2.08
PCDHA4Q9UN74 VEGFA-209ENST00000425836 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC28.05■■■□□ 2.08
PCDHA4Q9UN74 FGF13-AS1-202ENST00000446383 584 ntTSL 3 BASIC28.05■■■□□ 2.08
PCDHA4Q9UN74 C16orf52-207ENST00000569656 1257 ntTSL 5 BASIC28.05■■■□□ 2.08
PCDHA4Q9UN74 PLEKHJ1-204ENST00000586608 935 ntTSL 3 BASIC28.05■■■□□ 2.08
PCDHA4Q9UN74 GATA4-209ENST00000622443 1982 ntTSL 5 BASIC28.04■■■□□ 2.08
PCDHA4Q9UN74 VRK2-202ENST00000412104 1916 ntTSL 1 (best) BASIC28.04■■■□□ 2.08
PCDHA4Q9UN74 COMT-204ENST00000403710 1548 ntAPPRIS P3 TSL 5 BASIC28.04■■■□□ 2.08
PCDHA4Q9UN74 FCGRT-217ENST00000599988 660 ntTSL 5 BASIC28.04■■■□□ 2.08
PCDHA4Q9UN74 RPUSD1-207ENST00000565809 1918 ntTSL 2 BASIC28.04■■■□□ 2.08
PCDHA4Q9UN74 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC28.03■■■□□ 2.08
PCDHA4Q9UN74 ARL6IP4-208ENST00000439686 796 ntAPPRIS ALT2 TSL 3 BASIC28.03■■■□□ 2.08
PCDHA4Q9UN74 MDFIC-208ENST00000614186 1068 ntTSL 1 (best) BASIC28.03■■■□□ 2.08
PCDHA4Q9UN74 PPP1R3F-205ENST00000495799 1537 ntTSL 1 (best) BASIC28.02■■■□□ 2.08
PCDHA4Q9UN74 DNAJB2-202ENST00000392086 1946 ntAPPRIS P1 TSL 2 BASIC28.02■■■□□ 2.08
Retrieved 100 of 98,524 protein–RNA pairs in 60.6 ms