Protein–RNA interactions for Protein: P54868

HMGCS2, Hydroxymethylglutaryl-CoA synthase, mitochondrial, humanhuman

Predictions only

Length 508 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS2P54868 C1QTNF5-202ENST00000528368 1356 ntAPPRIS P1 TSL 1 (best) BASIC28.78■■■□□ 2.2
HMGCS2P54868 GNAS-211ENST00000371095 1931 ntAPPRIS ALT1 TSL 1 (best) BASIC28.78■■■□□ 2.2
HMGCS2P54868 MIF-201ENST00000215754 939 ntAPPRIS P1 TSL 1 (best) BASIC28.77■■■□□ 2.2
HMGCS2P54868 AL354928.1-201ENST00000438380 617 ntTSL 2 BASIC28.77■■■□□ 2.2
HMGCS2P54868 HYI-210ENST00000486909 905 ntTSL 5 BASIC28.77■■■□□ 2.2
HMGCS2P54868 SDCCAG3-201ENST00000298537 2314 ntTSL 1 (best) BASIC28.77■■■□□ 2.2
HMGCS2P54868 NGB-201ENST00000298352 1884 ntAPPRIS P1 TSL 1 (best) BASIC28.76■■■□□ 2.2
HMGCS2P54868 GIPC1-203ENST00000393033 1926 ntAPPRIS P1 TSL 1 (best) BASIC28.76■■■□□ 2.19
HMGCS2P54868 PFDN2-201ENST00000368010 677 ntAPPRIS P1 TSL 1 (best) BASIC28.75■■■□□ 2.19
HMGCS2P54868 YBX1P4-201ENST00000392794 808 ntBASIC28.75■■■□□ 2.19
HMGCS2P54868 WHAMMP3-201ENST00000611636 1609 ntBASIC28.75■■■□□ 2.19
HMGCS2P54868 CTAG1B-201ENST00000328435 748 ntAPPRIS P1 TSL 1 (best) BASIC28.74■■■□□ 2.19
HMGCS2P54868 CLK2-201ENST00000355560 2120 ntAPPRIS ALT1 TSL 5 BASIC28.74■■■□□ 2.19
HMGCS2P54868 GUCD1-207ENST00000447813 895 ntTSL 3 BASIC28.74■■■□□ 2.19
HMGCS2P54868 AC009299.2-201ENST00000482477 511 ntBASIC28.74■■■□□ 2.19
HMGCS2P54868 CTAG1A-202ENST00000599837 748 ntAPPRIS P1 TSL 1 (best) BASIC28.74■■■□□ 2.19
HMGCS2P54868 PDK1-202ENST00000392571 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC28.74■■■□□ 2.19
HMGCS2P54868 RAB32-201ENST00000367495 1217 ntAPPRIS P1 TSL 1 (best) BASIC28.73■■■□□ 2.19
HMGCS2P54868 IGFBP3-202ENST00000381083 1050 ntAPPRIS ALT1 TSL 5 BASIC28.73■■■□□ 2.19
HMGCS2P54868 MXRA7-203ENST00000449428 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC28.73■■■□□ 2.19
HMGCS2P54868 LDLRAD3-203ENST00000528989 1879 ntTSL 1 (best) BASIC28.73■■■□□ 2.19
HMGCS2P54868 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC28.73■■■□□ 2.19
HMGCS2P54868 RASL10A-201ENST00000216101 1490 ntAPPRIS P1 TSL 1 (best) BASIC28.72■■■□□ 2.19
HMGCS2P54868 ST7-205ENST00000393446 2114 ntTSL 5 BASIC28.72■■■□□ 2.19
HMGCS2P54868 SOHLH1-202ENST00000425225 1411 ntAPPRIS ALT2 TSL 5 BASIC28.72■■■□□ 2.19
HMGCS2P54868 HSPE1-201ENST00000233893 950 ntAPPRIS P1 TSL 1 (best) BASIC28.72■■■□□ 2.19
HMGCS2P54868 ADAMTS13-203ENST00000371910 1074 ntTSL 1 (best) BASIC28.72■■■□□ 2.19
HMGCS2P54868 TPI1-210ENST00000613953 1460 ntTSL 1 (best) BASIC28.72■■■□□ 2.19
HMGCS2P54868 HDGF-210ENST00000537739 2073 ntAPPRIS P1 TSL 1 (best) BASIC28.71■■■□□ 2.19
HMGCS2P54868 RSPH1-201ENST00000291536 1430 ntAPPRIS P1 TSL 1 (best) BASIC28.71■■■□□ 2.19
HMGCS2P54868 IDNK-203ENST00000405990 629 ntTSL 2 BASIC28.71■■■□□ 2.19
HMGCS2P54868 ARHGEF7-AS2-201ENST00000425094 1239 ntTSL 1 (best) BASIC28.71■■■□□ 2.19
HMGCS2P54868 HAGHL-205ENST00000561546 1041 ntTSL 2 BASIC28.71■■■□□ 2.19
HMGCS2P54868 KANSL1L-207ENST00000452086 2334 ntTSL 1 (best) BASIC28.71■■■□□ 2.19
HMGCS2P54868 FGFRL1-205ENST00000510644 2304 ntAPPRIS P1 TSL 1 (best) BASIC28.7■■■□□ 2.19
HMGCS2P54868 ANAPC13-201ENST00000354910 1209 ntAPPRIS P1 TSL 1 (best) BASIC28.7■■■□□ 2.18
HMGCS2P54868 ALKAL1-201ENST00000358543 1217 ntAPPRIS P2 TSL 1 (best) BASIC28.7■■■□□ 2.18
HMGCS2P54868 GLTP-201ENST00000318348 2356 ntAPPRIS P1 TSL 1 (best) BASIC28.7■■■□□ 2.18
HMGCS2P54868 PNMT-201ENST00000269582 1253 ntAPPRIS P1 TSL 1 (best) BASIC28.69■■■□□ 2.18
HMGCS2P54868 TIE1-210ENST00000538015 1140 ntTSL 1 (best) BASIC28.69■■■□□ 2.18
HMGCS2P54868 ZSCAN18-202ENST00000421612 1488 ntTSL 4 BASIC28.69■■■□□ 2.18
HMGCS2P54868 RCC1L-202ENST00000614461 2419 ntTSL 1 (best) BASIC28.69■■■□□ 2.18
HMGCS2P54868 MTERF3-201ENST00000287025 1409 ntAPPRIS P1 TSL 1 (best) BASIC28.69■■■□□ 2.18
HMGCS2P54868 FAM173A-202ENST00000564000 1088 ntAPPRIS ALT2 TSL 2 BASIC28.68■■■□□ 2.18
HMGCS2P54868 SV2B-203ENST00000545111 2099 ntTSL 2 BASIC28.68■■■□□ 2.18
HMGCS2P54868 CABP1-202ENST00000316803 1658 ntTSL 1 (best) BASIC28.67■■■□□ 2.18
HMGCS2P54868 ABHD12-202ENST00000376542 1725 ntTSL 1 (best) BASIC28.67■■■□□ 2.18
HMGCS2P54868 AGFG1-205ENST00000409979 2089 ntAPPRIS ALT1 TSL 5 BASIC28.67■■■□□ 2.18
HMGCS2P54868 VSTM2A-202ENST00000402613 1076 ntTSL 2 BASIC28.67■■■□□ 2.18
HMGCS2P54868 GPRC5B-202ENST00000535671 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC28.67■■■□□ 2.18
HMGCS2P54868 FAH-213ENST00000561421 1549 ntAPPRIS P1 TSL 1 (best) BASIC28.67■■■□□ 2.18
HMGCS2P54868 RNASET2-210ENST00000508775 1375 ntAPPRIS P1 TSL 1 (best) BASIC28.66■■■□□ 2.18
HMGCS2P54868 ADAMTSL5-202ENST00000395467 1533 ntTSL 5 BASIC28.66■■■□□ 2.18
HMGCS2P54868 IGFBP6-201ENST00000301464 1169 ntAPPRIS P2 TSL 1 (best) BASIC28.66■■■□□ 2.18
HMGCS2P54868 AL355490.1-201ENST00000445808 805 ntTSL 3 BASIC28.66■■■□□ 2.18
HMGCS2P54868 LMAN2-208ENST00000515209 1149 ntAPPRIS ALT2 TSL 3 BASIC28.66■■■□□ 2.18
HMGCS2P54868 PPAN-202ENST00000393793 1575 ntTSL 5 BASIC28.66■■■□□ 2.18
HMGCS2P54868 OSCAR-202ENST00000351806 1375 ntAPPRIS ALT2 TSL 1 (best) BASIC28.65■■■□□ 2.18
HMGCS2P54868 MIR4508-201ENST00000584178 70 ntBASIC28.65■■■□□ 2.18
HMGCS2P54868 RAET1E-AS1-203ENST00000606915 1210 ntTSL 1 (best) BASIC28.65■■■□□ 2.18
HMGCS2P54868 EPHB2-207ENST00000544305 1709 ntTSL 1 (best) BASIC28.64■■■□□ 2.18
HMGCS2P54868 MDK-206ENST00000407067 1026 ntAPPRIS P2 TSL 1 (best) BASIC28.64■■■□□ 2.18
HMGCS2P54868 AC055876.1-201ENST00000430589 895 ntTSL 2 BASIC28.64■■■□□ 2.18
HMGCS2P54868 SP8-202ENST00000418710 1618 ntAPPRIS ALT2 TSL 1 (best) BASIC28.64■■■□□ 2.18
HMGCS2P54868 COL13A1-214ENST00000522165 2061 ntAPPRIS ALT2 TSL 5 BASIC28.63■■■□□ 2.17
HMGCS2P54868 IDNK-201ENST00000376417 511 ntTSL 5 BASIC28.63■■■□□ 2.17
HMGCS2P54868 IDNK-202ENST00000376419 692 ntAPPRIS P1 TSL 1 (best) BASIC28.63■■■□□ 2.17
HMGCS2P54868 PCK2-202ENST00000396973 1830 ntTSL 1 (best) BASIC28.62■■■□□ 2.17
HMGCS2P54868 TM6SF1-204ENST00000379390 1638 ntTSL 1 (best) BASIC28.62■■■□□ 2.17
HMGCS2P54868 ZNF606-203ENST00000547121 1196 ntTSL 2 BASIC28.62■■■□□ 2.17
HMGCS2P54868 WTAP-207ENST00000631126 1430 ntTSL 3 BASIC28.61■■■□□ 2.17
HMGCS2P54868 SLC30A10-202ENST00000366926 1915 ntAPPRIS P1 TSL 1 (best) BASIC28.61■■■□□ 2.17
HMGCS2P54868 TMEM191C-206ENST00000432134 1129 ntAPPRIS ALT2 TSL 5 BASIC28.61■■■□□ 2.17
HMGCS2P54868 EPM2A-202ENST00000435470 1278 ntTSL 1 (best) BASIC28.61■■■□□ 2.17
HMGCS2P54868 BMP8A-201ENST00000331593 1692 ntAPPRIS P1 TSL 1 (best) BASIC28.61■■■□□ 2.17
HMGCS2P54868 PROC-203ENST00000409048 1586 ntTSL 5 BASIC28.6■■■□□ 2.17
HMGCS2P54868 AL590094.1-201ENST00000635581 706 ntTSL 2 BASIC28.6■■■□□ 2.17
HMGCS2P54868 ANKRD13D-211ENST00000511455 2139 ntAPPRIS P1 TSL 1 (best) BASIC28.6■■■□□ 2.17
HMGCS2P54868 HOXB3-202ENST00000460160 1525 ntTSL 5 BASIC28.59■■■□□ 2.17
HMGCS2P54868 HES6-204ENST00000409182 863 ntTSL 2 BASIC28.59■■■□□ 2.17
HMGCS2P54868 AC090241.2-201ENST00000602329 432 ntTSL 4 BASIC28.59■■■□□ 2.17
HMGCS2P54868 EGFL8-220ENST00000395512 1312 ntAPPRIS P1 TSL 1 (best) BASIC28.59■■■□□ 2.17
HMGCS2P54868 CCDC61-204ENST00000595358 1817 ntAPPRIS P2 TSL 5 BASIC28.59■■■□□ 2.17
HMGCS2P54868 RFFL-206ENST00000447669 2030 ntAPPRIS P1 TSL 5 BASIC28.59■■■□□ 2.17
HMGCS2P54868 ARHGDIA-203ENST00000541078 1517 ntAPPRIS P1 TSL 3 BASIC28.59■■■□□ 2.17
HMGCS2P54868 LYPD6B-203ENST00000409642 1577 ntAPPRIS P3 TSL 1 (best) BASIC28.58■■■□□ 2.17
HMGCS2P54868 NKX2-5-204ENST00000521848 1027 ntTSL 2 BASIC28.58■■■□□ 2.17
HMGCS2P54868 AC103724.3-201ENST00000564481 992 ntBASIC28.58■■■□□ 2.17
HMGCS2P54868 WDR38-202ENST00000613760 1323 ntAPPRIS ALT2 TSL 1 (best) BASIC28.58■■■□□ 2.17
HMGCS2P54868 EMID1-202ENST00000404755 2049 ntTSL 5 BASIC28.58■■■□□ 2.17
HMGCS2P54868 KAZN-207ENST00000503743 1475 ntTSL 1 (best) BASIC28.58■■■□□ 2.17
HMGCS2P54868 FBXL8-206ENST00000519917 1460 ntAPPRIS P1 TSL 5 BASIC28.58■■■□□ 2.17
HMGCS2P54868 NFYB-205ENST00000551727 1727 ntAPPRIS P1 TSL 3 BASIC28.57■■■□□ 2.16
HMGCS2P54868 ST7-202ENST00000323984 2142 ntTSL 5 BASIC28.57■■■□□ 2.16
HMGCS2P54868 ST7-207ENST00000393449 2127 ntTSL 5 BASIC28.57■■■□□ 2.16
HMGCS2P54868 MDK-203ENST00000395566 828 ntAPPRIS P2 TSL 1 (best) BASIC28.57■■■□□ 2.16
HMGCS2P54868 RUNX1-205ENST00000399240 1590 ntTSL 3 BASIC28.57■■■□□ 2.16
HMGCS2P54868 PI4KAP2-202ENST00000450651 2294 ntTSL 5 BASIC28.57■■■□□ 2.16
HMGCS2P54868 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC28.56■■■□□ 2.16
HMGCS2P54868 PKIG-206ENST00000372892 1338 ntAPPRIS P1 TSL 2 BASIC28.56■■■□□ 2.16
Retrieved 100 of 98,524 protein–RNA pairs in 41.7 ms