Protein–RNA interactions for Protein: O75127

PTCD1, Pentatricopeptide repeat-containing protein 1, mitochondrial, humanhuman

Known RBP Predictions only

Length 700 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD1O75127 QDPR-202ENST00000428702 1278 ntTSL 2 BASIC31.96■■■□□ 2.71
PTCD1O75127 PHOX2A-201ENST00000298231 1699 ntAPPRIS P1 TSL 1 (best) BASIC31.95■■■□□ 2.71
PTCD1O75127 NELFB-202ENST00000634710 1887 ntAPPRIS P2 TSL 1 (best) BASIC31.95■■■□□ 2.71
PTCD1O75127 F8A1-201ENST00000610495 1713 ntAPPRIS P1 BASIC31.95■■■□□ 2.71
PTCD1O75127 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC31.95■■■□□ 2.71
PTCD1O75127 FGFRL1-205ENST00000510644 2304 ntAPPRIS P1 TSL 1 (best) BASIC31.94■■■□□ 2.7
PTCD1O75127 H2AFY-204ENST00000423969 924 ntTSL 2 BASIC31.94■■■□□ 2.7
PTCD1O75127 RASGEF1B-211ENST00000514050 537 ntTSL 2 BASIC31.94■■■□□ 2.7
PTCD1O75127 KANSL1L-207ENST00000452086 2334 ntTSL 1 (best) BASIC31.93■■■□□ 2.7
PTCD1O75127 MTCH1-202ENST00000373627 2057 ntAPPRIS P1 TSL 1 (best) BASIC31.92■■■□□ 2.7
PTCD1O75127 FAM120AOS-202ENST00000423591 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC31.92■■■□□ 2.7
PTCD1O75127 GIPC1-203ENST00000393033 1926 ntAPPRIS P1 TSL 1 (best) BASIC31.92■■■□□ 2.7
PTCD1O75127 GNAS-211ENST00000371095 1931 ntAPPRIS ALT1 TSL 1 (best) BASIC31.91■■■□□ 2.7
PTCD1O75127 CTAG1B-201ENST00000328435 748 ntAPPRIS P1 TSL 1 (best) BASIC31.91■■■□□ 2.7
PTCD1O75127 RAB32-201ENST00000367495 1217 ntAPPRIS P1 TSL 1 (best) BASIC31.91■■■□□ 2.7
PTCD1O75127 IGFBP3-202ENST00000381083 1050 ntAPPRIS ALT1 TSL 5 BASIC31.91■■■□□ 2.7
PTCD1O75127 AL354928.1-201ENST00000438380 617 ntTSL 2 BASIC31.91■■■□□ 2.7
PTCD1O75127 CTAG1A-202ENST00000599837 748 ntAPPRIS P1 TSL 1 (best) BASIC31.91■■■□□ 2.7
PTCD1O75127 SOHLH1-202ENST00000425225 1411 ntAPPRIS ALT2 TSL 5 BASIC31.91■■■□□ 2.7
PTCD1O75127 KCTD17-202ENST00000403888 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC31.9■■■□□ 2.7
PTCD1O75127 YBX1P4-201ENST00000392794 808 ntBASIC31.9■■■□□ 2.7
PTCD1O75127 GUCD1-207ENST00000447813 895 ntTSL 3 BASIC31.9■■■□□ 2.7
PTCD1O75127 AC009299.2-201ENST00000482477 511 ntBASIC31.9■■■□□ 2.7
PTCD1O75127 HYI-210ENST00000486909 905 ntTSL 5 BASIC31.9■■■□□ 2.7
PTCD1O75127 C1QTNF5-202ENST00000528368 1356 ntAPPRIS P1 TSL 1 (best) BASIC31.9■■■□□ 2.7
PTCD1O75127 LDLRAD3-203ENST00000528989 1879 ntTSL 1 (best) BASIC31.89■■■□□ 2.7
PTCD1O75127 HSPE1-201ENST00000233893 950 ntAPPRIS P1 TSL 1 (best) BASIC31.89■■■□□ 2.7
PTCD1O75127 PFDN2-201ENST00000368010 677 ntAPPRIS P1 TSL 1 (best) BASIC31.89■■■□□ 2.7
PTCD1O75127 ADAMTS13-203ENST00000371910 1074 ntTSL 1 (best) BASIC31.89■■■□□ 2.7
PTCD1O75127 NGB-201ENST00000298352 1884 ntAPPRIS P1 TSL 1 (best) BASIC31.89■■■□□ 2.69
PTCD1O75127 HDGF-210ENST00000537739 2073 ntAPPRIS P1 TSL 1 (best) BASIC31.88■■■□□ 2.69
PTCD1O75127 HAGHL-205ENST00000561546 1041 ntTSL 2 BASIC31.88■■■□□ 2.69
PTCD1O75127 CLK2-201ENST00000355560 2120 ntAPPRIS ALT1 TSL 5 BASIC31.87■■■□□ 2.69
PTCD1O75127 TPI1-210ENST00000613953 1460 ntTSL 1 (best) BASIC31.87■■■□□ 2.69
PTCD1O75127 PNMT-201ENST00000269582 1253 ntAPPRIS P1 TSL 1 (best) BASIC31.87■■■□□ 2.69
PTCD1O75127 ANAPC13-201ENST00000354910 1209 ntAPPRIS P1 TSL 1 (best) BASIC31.87■■■□□ 2.69
PTCD1O75127 TIE1-210ENST00000538015 1140 ntTSL 1 (best) BASIC31.87■■■□□ 2.69
PTCD1O75127 MXRA7-203ENST00000449428 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC31.86■■■□□ 2.69
PTCD1O75127 ANKRD13D-211ENST00000511455 2139 ntAPPRIS P1 TSL 1 (best) BASIC31.86■■■□□ 2.69
PTCD1O75127 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC31.86■■■□□ 2.69
PTCD1O75127 FOXA2-202ENST00000419308 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC31.86■■■□□ 2.69
PTCD1O75127 WHAMMP3-201ENST00000611636 1609 ntBASIC31.86■■■□□ 2.69
PTCD1O75127 PDK1-202ENST00000392571 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC31.85■■■□□ 2.69
PTCD1O75127 RASL10A-201ENST00000216101 1490 ntAPPRIS P1 TSL 1 (best) BASIC31.85■■■□□ 2.69
PTCD1O75127 MTERF3-201ENST00000287025 1409 ntAPPRIS P1 TSL 1 (best) BASIC31.85■■■□□ 2.69
PTCD1O75127 GPRC5B-202ENST00000535671 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC31.84■■■□□ 2.69
PTCD1O75127 VSTM2A-202ENST00000402613 1076 ntTSL 2 BASIC31.83■■■□□ 2.69
PTCD1O75127 IDNK-203ENST00000405990 629 ntTSL 2 BASIC31.83■■■□□ 2.69
PTCD1O75127 FAM173A-202ENST00000564000 1088 ntAPPRIS ALT2 TSL 2 BASIC31.83■■■□□ 2.69
PTCD1O75127 RSPH1-201ENST00000291536 1430 ntAPPRIS P1 TSL 1 (best) BASIC31.83■■■□□ 2.69
PTCD1O75127 IGFBP6-201ENST00000301464 1169 ntAPPRIS P2 TSL 1 (best) BASIC31.82■■■□□ 2.68
PTCD1O75127 ALKAL1-201ENST00000358543 1217 ntAPPRIS P2 TSL 1 (best) BASIC31.82■■■□□ 2.68
PTCD1O75127 AC055876.1-201ENST00000430589 895 ntTSL 2 BASIC31.82■■■□□ 2.68
PTCD1O75127 ZSCAN18-202ENST00000421612 1488 ntTSL 4 BASIC31.82■■■□□ 2.68
PTCD1O75127 ARHGEF7-AS2-201ENST00000425094 1239 ntTSL 1 (best) BASIC31.81■■■□□ 2.68
PTCD1O75127 ABHD12-202ENST00000376542 1725 ntTSL 1 (best) BASIC31.8■■■□□ 2.68
PTCD1O75127 AL355490.1-201ENST00000445808 805 ntTSL 3 BASIC31.8■■■□□ 2.68
PTCD1O75127 RAET1E-AS1-203ENST00000606915 1210 ntTSL 1 (best) BASIC31.8■■■□□ 2.68
PTCD1O75127 SV2B-203ENST00000545111 2099 ntTSL 2 BASIC31.8■■■□□ 2.68
PTCD1O75127 FEZF2-202ENST00000475839 1918 ntAPPRIS P1 TSL 1 (best) BASIC31.79■■■□□ 2.68
PTCD1O75127 RNF130-205ENST00000521389 2263 ntAPPRIS P1 TSL 1 (best) BASIC31.79■■■□□ 2.68
PTCD1O75127 RNASET2-210ENST00000508775 1375 ntAPPRIS P1 TSL 1 (best) BASIC31.79■■■□□ 2.68
PTCD1O75127 ZNF606-203ENST00000547121 1196 ntTSL 2 BASIC31.78■■■□□ 2.68
PTCD1O75127 MIR4508-201ENST00000584178 70 ntBASIC31.78■■■□□ 2.68
PTCD1O75127 AGFG1-205ENST00000409979 2089 ntAPPRIS ALT1 TSL 5 BASIC31.78■■■□□ 2.68
PTCD1O75127 IDNK-201ENST00000376417 511 ntTSL 5 BASIC31.77■■■□□ 2.68
PTCD1O75127 IDNK-202ENST00000376419 692 ntAPPRIS P1 TSL 1 (best) BASIC31.77■■■□□ 2.68
PTCD1O75127 EPM2A-202ENST00000435470 1278 ntTSL 1 (best) BASIC31.77■■■□□ 2.68
PTCD1O75127 LMAN2-208ENST00000515209 1149 ntAPPRIS ALT2 TSL 3 BASIC31.77■■■□□ 2.68
PTCD1O75127 AC090241.2-201ENST00000602329 432 ntTSL 4 BASIC31.77■■■□□ 2.68
PTCD1O75127 SP8-202ENST00000418710 1618 ntAPPRIS ALT2 TSL 1 (best) BASIC31.77■■■□□ 2.68
PTCD1O75127 OSCAR-202ENST00000351806 1375 ntAPPRIS ALT2 TSL 1 (best) BASIC31.77■■■□□ 2.68
PTCD1O75127 AL590094.1-201ENST00000635581 706 ntTSL 2 BASIC31.76■■■□□ 2.67
PTCD1O75127 PPAN-202ENST00000393793 1575 ntTSL 5 BASIC31.76■■■□□ 2.67
PTCD1O75127 CABP1-202ENST00000316803 1658 ntTSL 1 (best) BASIC31.76■■■□□ 2.67
PTCD1O75127 FAM149A-201ENST00000227065 2708 ntAPPRIS P2 TSL 1 (best) BASIC31.76■■■□□ 2.67
PTCD1O75127 WTAP-207ENST00000631126 1430 ntTSL 3 BASIC31.75■■■□□ 2.67
PTCD1O75127 ADAMTSL5-202ENST00000395467 1533 ntTSL 5 BASIC31.75■■■□□ 2.67
PTCD1O75127 EPHB2-207ENST00000544305 1709 ntTSL 1 (best) BASIC31.75■■■□□ 2.67
PTCD1O75127 MDK-206ENST00000407067 1026 ntAPPRIS P2 TSL 1 (best) BASIC31.75■■■□□ 2.67
PTCD1O75127 COL13A1-214ENST00000522165 2061 ntAPPRIS ALT2 TSL 5 BASIC31.75■■■□□ 2.67
PTCD1O75127 RFFL-206ENST00000447669 2030 ntAPPRIS P1 TSL 5 BASIC31.75■■■□□ 2.67
PTCD1O75127 TM6SF1-204ENST00000379390 1638 ntTSL 1 (best) BASIC31.75■■■□□ 2.67
PTCD1O75127 PQLC1-202ENST00000357575 2475 ntAPPRIS ALT1 TSL 5 BASIC31.74■■■□□ 2.67
PTCD1O75127 MDK-203ENST00000395566 828 ntAPPRIS P2 TSL 1 (best) BASIC31.74■■■□□ 2.67
PTCD1O75127 HES6-204ENST00000409182 863 ntTSL 2 BASIC31.74■■■□□ 2.67
PTCD1O75127 PCK2-202ENST00000396973 1830 ntTSL 1 (best) BASIC31.74■■■□□ 2.67
PTCD1O75127 FAH-213ENST00000561421 1549 ntAPPRIS P1 TSL 1 (best) BASIC31.74■■■□□ 2.67
PTCD1O75127 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC31.73■■■□□ 2.67
PTCD1O75127 TMEM191C-206ENST00000432134 1129 ntAPPRIS ALT2 TSL 5 BASIC31.73■■■□□ 2.67
PTCD1O75127 AC103724.3-201ENST00000564481 992 ntBASIC31.73■■■□□ 2.67
PTCD1O75127 LRRC10B-201ENST00000378075 2219 ntAPPRIS P1 BASIC31.73■■■□□ 2.67
PTCD1O75127 HOXB3-202ENST00000460160 1525 ntTSL 5 BASIC31.73■■■□□ 2.67
PTCD1O75127 EGFL8-220ENST00000395512 1312 ntAPPRIS P1 TSL 1 (best) BASIC31.73■■■□□ 2.67
PTCD1O75127 AL592295.1-201ENST00000400984 884 ntBASIC31.72■■■□□ 2.67
PTCD1O75127 TMEM151B-201ENST00000438774 1140 ntAPPRIS ALT2 TSL 3 BASIC31.72■■■□□ 2.67
PTCD1O75127 PKIG-206ENST00000372892 1338 ntAPPRIS P1 TSL 2 BASIC31.72■■■□□ 2.67
PTCD1O75127 AC139426.1-201ENST00000568218 2529 ntBASIC31.72■■■□□ 2.67
PTCD1O75127 KIAA2013-202ENST00000376576 2539 ntTSL 2 BASIC31.71■■■□□ 2.67
PTCD1O75127 SLC30A10-202ENST00000366926 1915 ntAPPRIS P1 TSL 1 (best) BASIC31.71■■■□□ 2.67
Retrieved 100 of 98,524 protein–RNA pairs in 84.1 ms