Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 DACT1-206ENST00000556859 2239 ntAPPRIS ALT2 TSL 2 BASIC21.01■□□□□ 0.95
CHMP1AQ9HD42 NMB-201ENST00000360476 1007 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CHMP1AQ9HD42 PPP1R14C-201ENST00000361131 2152 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CHMP1AQ9HD42 AC020928.2-201ENST00000588717 2197 ntBASIC21.01■□□□□ 0.95
CHMP1AQ9HD42 TMEM251-202ENST00000415050 1303 ntTSL 2 BASIC21.01■□□□□ 0.95
CHMP1AQ9HD42 ARMC10-204ENST00000425331 2443 ntTSL 2 BASIC21■□□□□ 0.95
CHMP1AQ9HD42 LINC02323-201ENST00000559946 1603 ntTSL 3 BASIC21■□□□□ 0.95
CHMP1AQ9HD42 OTUD5-201ENST00000156084 2740 ntAPPRIS P3 TSL 1 (best) BASIC21■□□□□ 0.95
CHMP1AQ9HD42 NXPH4-201ENST00000349394 1804 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
CHMP1AQ9HD42 CDKN2A-201ENST00000304494 1218 ntTSL 1 (best) BASIC21■□□□□ 0.95
CHMP1AQ9HD42 HTRA1-201ENST00000368984 2120 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
CHMP1AQ9HD42 CALM3-209ENST00000597743 577 ntTSL 4 BASIC21■□□□□ 0.95
CHMP1AQ9HD42 OVOL2-201ENST00000278780 1555 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
CHMP1AQ9HD42 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
CHMP1AQ9HD42 RTN2-208ENST00000590526 2357 ntTSL 5 BASIC21■□□□□ 0.95
CHMP1AQ9HD42 ACSS1-202ENST00000376726 2244 ntTSL 2 BASIC20.99■□□□□ 0.95
CHMP1AQ9HD42 ZFP90-204ENST00000564323 560 ntTSL 4 BASIC20.99■□□□□ 0.95
CHMP1AQ9HD42 ZFP90-219ENST00000611381 695 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
CHMP1AQ9HD42 SNAI3-AS1-204ENST00000567997 2048 ntBASIC20.99■□□□□ 0.95
CHMP1AQ9HD42 EIF5A-202ENST00000336458 1511 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CHMP1AQ9HD42 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CHMP1AQ9HD42 TIGD3-201ENST00000309880 2012 ntAPPRIS P1 TSL 2 BASIC20.97■□□□□ 0.95
CHMP1AQ9HD42 CPLX1-203ENST00000505203 2011 ntTSL 2 BASIC20.97■□□□□ 0.95
CHMP1AQ9HD42 MBOAT7-205ENST00000431666 2471 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
CHMP1AQ9HD42 VAX2-201ENST00000234392 1147 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CHMP1AQ9HD42 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC20.97■□□□□ 0.95
CHMP1AQ9HD42 KLC1-203ENST00000347839 2271 ntTSL 5 BASIC20.97■□□□□ 0.95
CHMP1AQ9HD42 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
CHMP1AQ9HD42 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
CHMP1AQ9HD42 RP9P-201ENST00000381639 1303 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
CHMP1AQ9HD42 ALG2-203ENST00000476832 1880 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CHMP1AQ9HD42 NELFB-202ENST00000634710 1887 ntAPPRIS P2 TSL 1 (best) BASIC20.96■□□□□ 0.95
CHMP1AQ9HD42 GATA4-209ENST00000622443 1982 ntTSL 5 BASIC20.96■□□□□ 0.95
CHMP1AQ9HD42 BCAP31-201ENST00000345046 1589 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
CHMP1AQ9HD42 U2AF1L5-201ENST00000610664 897 ntAPPRIS P5 TSL 1 (best) BASIC20.95■□□□□ 0.94
CHMP1AQ9HD42 TSPOAP1-AS1-205ENST00000580022 2337 ntTSL 2 BASIC20.95■□□□□ 0.94
CHMP1AQ9HD42 MAD2L2-201ENST00000235310 1860 ntAPPRIS P1 TSL 2 BASIC20.94■□□□□ 0.94
CHMP1AQ9HD42 PURG-202ENST00000475541 2875 ntAPPRIS P1 BASIC20.94■□□□□ 0.94
CHMP1AQ9HD42 CNNM2-201ENST00000369875 2059 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
CHMP1AQ9HD42 SLC9A3-201ENST00000264938 2584 ntAPPRIS P3 TSL 1 (best) BASIC20.94■□□□□ 0.94
CHMP1AQ9HD42 DCUN1D5-201ENST00000260247 1337 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CHMP1AQ9HD42 SNX5-201ENST00000377759 2270 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CHMP1AQ9HD42 SSBP3-202ENST00000357475 1533 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
CHMP1AQ9HD42 VSIG8-201ENST00000368100 1818 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
CHMP1AQ9HD42 AC004837.3-201ENST00000420748 565 ntTSL 4 BASIC20.93■□□□□ 0.94
CHMP1AQ9HD42 AP000911.1-206ENST00000531938 711 ntTSL 3 BASIC20.93■□□□□ 0.94
CHMP1AQ9HD42 FLT1-202ENST00000539099 1911 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
CHMP1AQ9HD42 AC145676.1-201ENST00000514988 2004 ntBASIC20.92■□□□□ 0.94
CHMP1AQ9HD42 CACNG6-202ENST00000346968 645 ntTSL 5 BASIC20.92■□□□□ 0.94
CHMP1AQ9HD42 PRSS41-201ENST00000399677 1127 ntAPPRIS P1 TSL 5 BASIC20.92■□□□□ 0.94
CHMP1AQ9HD42 VEGFA-226ENST00000611736 1239 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
CHMP1AQ9HD42 AC087741.3-201ENST00000624270 1347 ntBASIC20.92■□□□□ 0.94
CHMP1AQ9HD42 EMID1-202ENST00000404755 2049 ntTSL 5 BASIC20.91■□□□□ 0.94
CHMP1AQ9HD42 AC044849.2-201ENST00000606596 710 ntBASIC20.91■□□□□ 0.94
CHMP1AQ9HD42 PIM3-201ENST00000360612 2369 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CHMP1AQ9HD42 ST6GALNAC2-201ENST00000225276 2170 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CHMP1AQ9HD42 PREB-201ENST00000260643 2166 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CHMP1AQ9HD42 MEN1-204ENST00000377313 1871 ntAPPRIS P3 TSL 2 BASIC20.9■□□□□ 0.94
CHMP1AQ9HD42 DHFR-203ENST00000505337 1719 ntAPPRIS P1 TSL 2 BASIC20.9■□□□□ 0.94
CHMP1AQ9HD42 C2orf88-204ENST00000409870 1441 ntAPPRIS P1 TSL 2 BASIC20.9■□□□□ 0.94
CHMP1AQ9HD42 MAD2L2-207ENST00000376692 1118 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CHMP1AQ9HD42 TXNL4A-208ENST00000588162 752 ntTSL 2 BASIC20.9■□□□□ 0.94
CHMP1AQ9HD42 NAGS-201ENST00000293404 2182 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CHMP1AQ9HD42 CDC16-211ENST00000628084 2058 ntTSL 5 BASIC20.9■□□□□ 0.94
CHMP1AQ9HD42 AC093323.1-202ENST00000635031 2045 ntBASIC20.9■□□□□ 0.94
CHMP1AQ9HD42 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC20.9■□□□□ 0.94
CHMP1AQ9HD42 AC110285.7-201ENST00000624417 1536 ntBASIC20.89■□□□□ 0.94
CHMP1AQ9HD42 SP5-201ENST00000375281 2033 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
CHMP1AQ9HD42 SRSF9-201ENST00000229390 1201 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
CHMP1AQ9HD42 RHBDD2-202ENST00000318622 1878 ntTSL 2 BASIC20.89■□□□□ 0.93
CHMP1AQ9HD42 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
CHMP1AQ9HD42 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC20.89■□□□□ 0.93
CHMP1AQ9HD42 NTN3-201ENST00000293973 1986 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CHMP1AQ9HD42 PINK1-201ENST00000321556 2660 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CHMP1AQ9HD42 GSX2-202ENST00000503800 1181 ntTSL 5 BASIC20.88■□□□□ 0.93
CHMP1AQ9HD42 GCLC-209ENST00000514004 2356 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
CHMP1AQ9HD42 CAPNS1-215ENST00000628018 1509 ntAPPRIS ALT2 TSL 5 BASIC20.88■□□□□ 0.93
CHMP1AQ9HD42 DCAF15-201ENST00000254337 2278 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CHMP1AQ9HD42 HNRNPL-201ENST00000221419 2471 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CHMP1AQ9HD42 TBC1D10A-201ENST00000215790 2077 ntAPPRIS P3 TSL 1 (best) BASIC20.87■□□□□ 0.93
CHMP1AQ9HD42 HDAC11-206ENST00000405025 576 ntTSL 4 BASIC20.87■□□□□ 0.93
CHMP1AQ9HD42 AP004609.3-201ENST00000610705 1884 ntBASIC20.87■□□□□ 0.93
CHMP1AQ9HD42 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC20.87■□□□□ 0.93
CHMP1AQ9HD42 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC20.87■□□□□ 0.93
CHMP1AQ9HD42 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC20.87■□□□□ 0.93
CHMP1AQ9HD42 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
CHMP1AQ9HD42 PRR35-201ENST00000409413 2216 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CHMP1AQ9HD42 ANKRD16-201ENST00000191063 1567 ntTSL 3 BASIC20.86■□□□□ 0.93
CHMP1AQ9HD42 ARMC10-202ENST00000323716 2635 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
CHMP1AQ9HD42 AL162393.1-201ENST00000437852 946 ntBASIC20.86■□□□□ 0.93
CHMP1AQ9HD42 ANKS3-203ENST00000450067 2272 ntTSL 5 BASIC20.86■□□□□ 0.93
CHMP1AQ9HD42 PPM1B-202ENST00000345249 1713 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
CHMP1AQ9HD42 C19orf47-202ENST00000392035 2126 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
CHMP1AQ9HD42 GDF1-201ENST00000247005 2517 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CHMP1AQ9HD42 CERS1-204ENST00000623882 2517 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
CHMP1AQ9HD42 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CHMP1AQ9HD42 BOD1-201ENST00000285908 1286 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
CHMP1AQ9HD42 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC20.85■□□□□ 0.93
CHMP1AQ9HD42 BOD1-206ENST00000480951 814 ntTSL 2 BASIC20.85■□□□□ 0.93
CHMP1AQ9HD42 RFFL-206ENST00000447669 2030 ntAPPRIS P1 TSL 5 BASIC20.85■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 59.9 ms