Protein–RNA interactions for Protein: Q99909

SSX3, Protein SSX3, humanhuman

Predictions only

Length 188 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSX3Q99909 TNIP2-201ENST00000315423 1974 ntAPPRIS P3 TSL 1 (best) BASIC20.45■□□□□ 0.86
SSX3Q99909 U2AF1-203ENST00000398137 1019 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
SSX3Q99909 AP000911.3-201ENST00000526377 1130 ntTSL 3 BASIC20.45■□□□□ 0.86
SSX3Q99909 U2AF1L5-212ENST00000639996 1019 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
SSX3Q99909 C14orf80-203ENST00000354560 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
SSX3Q99909 HSD17B1P1-201ENST00000590052 955 ntBASIC20.44■□□□□ 0.86
SSX3Q99909 C16orf74-204ENST00000602719 1002 ntAPPRIS ALT2 TSL 3 BASIC20.44■□□□□ 0.86
SSX3Q99909 COPZ2-210ENST00000621465 895 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
SSX3Q99909 MORF4L1-202ENST00000379535 2274 ntTSL 2 BASIC20.44■□□□□ 0.86
SSX3Q99909 TAZ-201ENST00000369776 1596 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
SSX3Q99909 FKBP1A-205ENST00000439640 1583 ntTSL 3 BASIC20.43■□□□□ 0.86
SSX3Q99909 CAPNS1-204ENST00000587718 1558 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
SSX3Q99909 LDLRAD4-218ENST00000592991 1640 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
SSX3Q99909 PEX7-203ENST00000541292 945 ntTSL 5 BASIC20.43■□□□□ 0.86
SSX3Q99909 SRP68-213ENST00000629930 165 ntTSL 5 BASIC20.43■□□□□ 0.86
SSX3Q99909 CAMKK1-201ENST00000158166 2459 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
SSX3Q99909 ZFAND2B-208ENST00000409594 2021 ntTSL 2 BASIC20.43■□□□□ 0.86
SSX3Q99909 CACNG7-203ENST00000391767 2688 ntAPPRIS P1 TSL 5 BASIC20.42■□□□□ 0.86
SSX3Q99909 FEZ1-201ENST00000278919 1748 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
SSX3Q99909 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
SSX3Q99909 PDF-201ENST00000288022 1158 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
SSX3Q99909 RPS2-210ENST00000530225 765 ntTSL 2 BASIC20.42■□□□□ 0.86
SSX3Q99909 AC016595.1-201ENST00000559410 383 ntTSL 3 BASIC20.42■□□□□ 0.86
SSX3Q99909 KLF15-201ENST00000296233 2574 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
SSX3Q99909 SPATA5L1-208ENST00000638607 1863 ntTSL 2 BASIC20.41■□□□□ 0.86
SSX3Q99909 BOK-AS1-201ENST00000434306 643 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
SSX3Q99909 CHST11-203ENST00000547956 936 ntTSL 2 BASIC20.41■□□□□ 0.86
SSX3Q99909 FANCE-201ENST00000229769 2554 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
SSX3Q99909 F8A3-201ENST00000622749 1759 ntAPPRIS P1 BASIC20.41■□□□□ 0.86
SSX3Q99909 IHH-201ENST00000295731 2023 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
SSX3Q99909 EHBP1L1-201ENST00000309295 5185 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
SSX3Q99909 CYB5R3-201ENST00000352397 2124 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
SSX3Q99909 HSD17B12-202ENST00000395700 994 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
SSX3Q99909 MPP6-203ENST00000409761 1703 ntTSL 5 BASIC20.4■□□□□ 0.86
SSX3Q99909 PPP1CC-208ENST00000551676 1581 ntTSL 2 BASIC20.4■□□□□ 0.86
SSX3Q99909 SSX2IP-203ENST00000437941 5843 ntTSL 2 BASIC20.4■□□□□ 0.86
SSX3Q99909 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
SSX3Q99909 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC20.39■□□□□ 0.86
SSX3Q99909 C9orf50-201ENST00000372478 1620 ntAPPRIS P2 TSL 2 BASIC20.39■□□□□ 0.86
SSX3Q99909 SSBP3-202ENST00000357475 1533 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
SSX3Q99909 LACTBL1-202ENST00000618559 1500 ntAPPRIS ALT2 TSL 5 BASIC20.39■□□□□ 0.85
SSX3Q99909 ZBTB25-202ENST00000555220 1440 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
SSX3Q99909 CBWD5-202ENST00000377384 1347 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
SSX3Q99909 BAX-202ENST00000345358 793 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
SSX3Q99909 BANF1-208ENST00000533166 1135 ntAPPRIS P1 TSL 2 BASIC20.39■□□□□ 0.85
SSX3Q99909 RPARP-AS1-205ENST00000596045 431 ntTSL 3 BASIC20.39■□□□□ 0.85
SSX3Q99909 ARMC10-208ENST00000441711 2524 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
SSX3Q99909 FHL2-202ENST00000344213 1769 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
SSX3Q99909 PHF23-205ENST00000571362 1768 ntTSL 2 BASIC20.39■□□□□ 0.85
SSX3Q99909 PIGX-201ENST00000296333 953 ntAPPRIS ALT2 TSL 2 BASIC20.38■□□□□ 0.85
SSX3Q99909 PKIG-207ENST00000372894 1191 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
SSX3Q99909 AC148477.6-201ENST00000623746 465 ntBASIC20.38■□□□□ 0.85
SSX3Q99909 ZDHHC14-204ENST00000414563 3134 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
SSX3Q99909 PURG-202ENST00000475541 2875 ntAPPRIS P1 BASIC20.38■□□□□ 0.85
SSX3Q99909 KCNQ5-208ENST00000414165 6236 ntTSL 5 BASIC20.38■□□□□ 0.85
SSX3Q99909 TMEM55B-201ENST00000250489 1961 ntAPPRIS P3 TSL 1 (best) BASIC20.37■□□□□ 0.85
SSX3Q99909 CEP120-209ENST00000515110 606 ntTSL 3 BASIC20.37■□□□□ 0.85
SSX3Q99909 NXPH3-201ENST00000328741 2179 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
SSX3Q99909 NFYB-205ENST00000551727 1727 ntAPPRIS P1 TSL 3 BASIC20.36■□□□□ 0.85
SSX3Q99909 MYCL-202ENST00000372816 1688 ntAPPRIS P3 TSL 2 BASIC20.36■□□□□ 0.85
SSX3Q99909 NELFB-201ENST00000343053 2698 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
SSX3Q99909 MAZ-203ENST00000545521 2333 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
SSX3Q99909 TNFRSF25-205ENST00000377782 1632 ntAPPRIS P4 TSL 1 (best) BASIC20.36■□□□□ 0.85
SSX3Q99909 TAF10-201ENST00000299424 1215 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
SSX3Q99909 UBALD1-203ENST00000587649 707 ntTSL 3 BASIC20.36■□□□□ 0.85
SSX3Q99909 BRD4-212ENST00000630599 726 ntTSL 2 BASIC20.36■□□□□ 0.85
SSX3Q99909 ARMC10-202ENST00000323716 2635 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
SSX3Q99909 AC078883.1-202ENST00000450443 1397 ntTSL 3 BASIC20.35■□□□□ 0.85
SSX3Q99909 RASSF5-204ENST00000580449 1932 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
SSX3Q99909 CDC14B-202ENST00000375241 5589 ntAPPRIS P2 TSL 1 (best) BASIC20.35■□□□□ 0.85
SSX3Q99909 GPX1-201ENST00000419349 1106 ntBASIC20.35■□□□□ 0.85
SSX3Q99909 LINC01918-201ENST00000436841 797 ntTSL 2 BASIC20.35■□□□□ 0.85
SSX3Q99909 FADD-201ENST00000301838 1841 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
SSX3Q99909 MIR219A2-201ENST00000608502 1504 ntBASIC20.34■□□□□ 0.85
SSX3Q99909 SNX15-202ENST00000377244 1939 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
SSX3Q99909 LSM7-201ENST00000252622 529 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
SSX3Q99909 HYAL2-202ENST00000395139 2136 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
SSX3Q99909 GSR-206ENST00000546342 1482 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
SSX3Q99909 TMEM187-201ENST00000369982 1880 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
SSX3Q99909 MTCH1-202ENST00000373627 2057 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
SSX3Q99909 BIN1-210ENST00000393041 2272 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
SSX3Q99909 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC20.34■□□□□ 0.85
SSX3Q99909 PCSK6-218ENST00000619160 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
SSX3Q99909 NPAS3-203ENST00000357798 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
SSX3Q99909 ANKS1B-203ENST00000341752 2115 ntTSL 2 BASIC20.33■□□□□ 0.85
SSX3Q99909 NME2-205ENST00000512737 826 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
SSX3Q99909 PTPRF-216ENST00000617451 1129 ntTSL 5 BASIC20.33■□□□□ 0.85
SSX3Q99909 EPB41L4A-AS2-201ENST00000623705 1396 ntBASIC20.33■□□□□ 0.84
SSX3Q99909 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
SSX3Q99909 G6PC3-201ENST00000269097 1533 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
SSX3Q99909 FZD8-201ENST00000374694 4030 ntAPPRIS P1 BASIC20.32■□□□□ 0.84
SSX3Q99909 PTPMT1-203ENST00000426530 1014 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
SSX3Q99909 AC068134.2-201ENST00000437095 576 ntTSL 3 BASIC20.32■□□□□ 0.84
SSX3Q99909 BLOC1S3-202ENST00000587722 732 ntAPPRIS P1 BASIC20.32■□□□□ 0.84
SSX3Q99909 AC022413.1-201ENST00000624602 984 ntBASIC20.32■□□□□ 0.84
SSX3Q99909 DRD5P2-201ENST00000421395 2012 ntBASIC20.32■□□□□ 0.84
SSX3Q99909 SLC35A1-203ENST00000369557 1653 ntTSL 2 BASIC20.32■□□□□ 0.84
SSX3Q99909 HMCES-202ENST00000389735 1763 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
SSX3Q99909 CDC34-201ENST00000215574 1471 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
SSX3Q99909 C1orf122-201ENST00000373042 973 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 70.2 ms