Protein–RNA interactions for Protein: Q86XP3

DDX42, ATP-dependent RNA helicase DDX42, humanhuman

Known RBP eCLIP

Length 938 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX42Q86XP3 DNHD1-219ENST00000533649 2557 ntTSL 1 (best)12.3□□□□□ -0.441e-5■■■□□ 15
DDX42Q86XP3 DNM2-208ENST00000587329 498 ntTSL 311.82□□□□□ -0.521e-5■■■□□ 15
DDX42Q86XP3 SYVN1-208ENST00000527142 796 ntTSL 511.38□□□□□ -0.591e-5■■■□□ 15
DDX42Q86XP3 G3BP1-206ENST00000519832 1173 ntTSL 1 (best)10.95□□□□□ -0.661e-5■■■□□ 15
DDX42Q86XP3 G3BP1-205ENST00000518726 869 ntTSL 1 (best)10.72□□□□□ -0.691e-5■■■□□ 15
DDX42Q86XP3 SYVN1-214ENST00000532771 709 ntTSL 310.11□□□□□ -0.791e-5■■■□□ 15
DDX42Q86XP3 SYVN1-211ENST00000529207 811 ntTSL 59.86□□□□□ -0.831e-5■■■□□ 15
DDX42Q86XP3 SYVN1-213ENST00000531018 826 ntTSL 39.67□□□□□ -0.861e-5■■■□□ 15
DDX42Q86XP3 AARS-205ENST00000567490 533 ntTSL 28.79□□□□□ -11e-5■■■□□ 15
DDX42Q86XP3 AARS-206ENST00000569790 528 ntTSL 57.65□□□□□ -1.181e-5■■■□□ 15
DDX42Q86XP3 IARS-205ENST00000443024 4341 ntTSL 5 BASIC7.54□□□□□ -1.21e-5■■■□□ 15
DDX42Q86XP3 IARS-206ENST00000447699 4186 ntTSL 1 (best) BASIC7.29□□□□□ -1.241e-5■■■□□ 15
DDX42Q86XP3 IARS-202ENST00000375643 4656 ntAPPRIS P1 TSL 1 (best) BASIC7.19□□□□□ -1.261e-5■■■□□ 15
DDX42Q86XP3 IARS-213ENST00000627121 4587 ntTSL 5 BASIC7.17□□□□□ -1.261e-5■■■□□ 15
DDX42Q86XP3 YTHDC1-207ENST00000579690 2983 ntAPPRIS ALT2 TSL 5 BASIC6.65□□□□□ -1.351e-5■■■□□ 15
DDX42Q86XP3 G3BP1-202ENST00000394123 10240 ntAPPRIS P1 TSL 1 (best) BASIC5.95□□□□□ -1.461e-5■■■□□ 15
DDX42Q86XP3 IARS-207ENST00000467876 298 ntTSL 33.88□□□□□ -1.791e-5■■■□□ 15
DDX42Q86XP3 ATF5-204ENST00000597227 828 ntTSL 317.48■□□□□ 0.395e-7■■■□□ 14.9
DDX42Q86XP3 ATF5-205ENST00000600336 682 ntTSL 2 BASIC16.13■□□□□ 0.175e-7■■■□□ 14.9
DDX42Q86XP3 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC20.54■□□□□ 0.881e-8■■■□□ 14.8
DDX42Q86XP3 LUC7L2-204ENST00000456182 2411 ntTSL 1 (best)19.42■□□□□ 0.71e-8■■■□□ 14.8
DDX42Q86XP3 LUC7L2-203ENST00000435096 570 ntTSL 319.17■□□□□ 0.661e-8■■■□□ 14.8
DDX42Q86XP3 LUC7L2-202ENST00000354926 2645 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.531e-8■■■□□ 14.8
DDX42Q86XP3 OAZ1-208ENST00000592727 726 ntTSL 215.97■□□□□ 0.152e-10■■■□□ 14.8
DDX42Q86XP3 LUC7L2-209ENST00000608368 551 ntTSL 415.34■□□□□ 0.051e-8■■■□□ 14.8
DDX42Q86XP3 LUC7L2-208ENST00000541170 1525 ntTSL 2 BASIC14.41□□□□□ -0.11e-8■■■□□ 14.8
DDX42Q86XP3 C7orf55-LUC7L2-201ENST00000541515 1661 ntAPPRIS P1 TSL 2 BASIC10.53□□□□□ -0.721e-8■■■□□ 14.8
DDX42Q86XP3 DNHD1-220ENST00000534210 2867 ntTSL 1 (best)15.92■□□□□ 0.147e-6■■■□□ 14.8
DDX42Q86XP3 DNHD1-216ENST00000532027 4881 ntTSL 211.46□□□□□ -0.587e-6■■■□□ 14.8
DDX42Q86XP3 DNHD1-212ENST00000527990 14298 ntAPPRIS P1 TSL 5 BASIC6.89□□□□□ -1.317e-6■■■□□ 14.8
DDX42Q86XP3 DNHD1-201ENST00000254579 14862 ntAPPRIS P1 TSL 5 BASIC6.58□□□□□ -1.367e-6■■■□□ 14.8
DDX42Q86XP3 BUB3-202ENST00000368859 667 ntTSL 3 BASIC19.73■□□□□ 0.752e-6■■■□□ 14.8
DDX42Q86XP3 BUB3-201ENST00000368858 1361 ntAPPRIS ALT1 TSL 1 (best) BASIC18.61■□□□□ 0.572e-6■■■□□ 14.8
DDX42Q86XP3 BUB3-203ENST00000368865 7828 ntAPPRIS P3 TSL 1 (best) BASIC8.41□□□□□ -1.062e-6■■■□□ 14.8
DDX42Q86XP3 ALDOA-208ENST00000562679 906 ntTSL 515.13■□□□□ 0.014e-13■■■□□ 14.7
DDX42Q86XP3 OAZ1-205ENST00000589361 679 ntTSL 1 (best)16.85■□□□□ 0.291e-10■■■□□ 14.7
DDX42Q86XP3 DOT1L-204ENST00000457590 2907 ntTSL 517.53■□□□□ 0.43e-7■■■□□ 14.7
DDX42Q86XP3 DOT1L-201ENST00000398665 7436 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.243e-7■■■□□ 14.7
DDX42Q86XP3 HMGB2-204ENST00000506267 629 ntTSL 323.73■■□□□ 1.391e-22■■■□□ 14.6
DDX42Q86XP3 LSS-205ENST00000457828 4390 ntTSL 1 (best) BASIC17.65■□□□□ 0.428e-8■■■□□ 14.6
DDX42Q86XP3 LSS-209ENST00000484808 251 ntTSL 517.55■□□□□ 0.48e-8■■■□□ 14.6
DDX42Q86XP3 HMGB2-203ENST00000446922 1175 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.241e-22■■■□□ 14.6
DDX42Q86XP3 LSS-202ENST00000397728 4936 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.148e-8■■■□□ 14.6
DDX42Q86XP3 LSS-211ENST00000522411 2523 ntTSL 2 BASIC15.74■□□□□ 0.118e-8■■■□□ 14.6
DDX42Q86XP3 LSS-201ENST00000356396 2995 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.018e-8■■■□□ 14.6
DDX42Q86XP3 HMGB2-205ENST00000511316 1841 ntTSL 213.69□□□□□ -0.221e-22■■■□□ 14.6
DDX42Q86XP3 HMGB2-201ENST00000296503 1889 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.381e-22■■■□□ 14.6
DDX42Q86XP3 ATF5-202ENST00000595125 1637 ntAPPRIS P1 TSL 2 BASIC20.82■□□□□ 0.924e-7■■□□□ 14.5
DDX42Q86XP3 LENG8-202ENST00000376514 5146 ntAPPRIS ALT2 TSL 5 BASIC17.87■□□□□ 0.453e-8■■□□□ 14.4
DDX42Q86XP3 LENG8-209ENST00000616932 2825 ntAPPRIS ALT2 TSL 5 BASIC16.85■□□□□ 0.293e-8■■□□□ 14.4
DDX42Q86XP3 LENG8-208ENST00000610347 5789 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.183e-8■■□□□ 14.4
DDX42Q86XP3 LENG8-203ENST00000421200 594 ntTSL 315.4■□□□□ 0.063e-8■■□□□ 14.4
DDX42Q86XP3 LENG8-201ENST00000326764 3991 ntAPPRIS P2 TSL 1 (best) BASIC14.02□□□□□ -0.163e-8■■□□□ 14.4
DDX42Q86XP3 PGK1-201ENST00000373316 4887 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.666e-10■■□□□ 14.4
DDX42Q86XP3 PGK1-202ENST00000474281 307 ntTSL 1 (best)5.76□□□□□ -1.496e-10■■□□□ 14.4
DDX42Q86XP3 SRSF1-206ENST00000583741 1465 ntTSL 521.68■■□□□ 1.066e-8■■□□□ 14.2
DDX42Q86XP3 SRSF1-208ENST00000584773 1317 ntTSL 5 BASIC19■□□□□ 0.636e-8■■□□□ 14.2
DDX42Q86XP3 SRSF1-209ENST00000585096 568 ntTSL 4 BASIC18.93■□□□□ 0.626e-8■■□□□ 14.2
DDX42Q86XP3 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.496e-8■■□□□ 14.2
DDX42Q86XP3 SRSF1-205ENST00000582730 3117 ntTSL 2 BASIC14.73□□□□□ -0.056e-8■■□□□ 14.2
DDX42Q86XP3 SRSF1-202ENST00000578430 689 ntTSL 213.88□□□□□ -0.196e-8■■□□□ 14.2
DDX42Q86XP3 SRSF1-204ENST00000581979 1720 ntTSL 1 (best)12.99□□□□□ -0.336e-8■■□□□ 14.2
DDX42Q86XP3 RNF213-213ENST00000571908 624 ntTSL 27.55□□□□□ -1.21e-6■■□□□ 14.1
DDX42Q86XP3 FASN-206ENST00000634990 8407 ntAPPRIS ALT1 TSL 5 BASIC14.48□□□□□ -0.096e-7■■□□□ 14.1
DDX42Q86XP3 FASN-201ENST00000306749 8565 ntAPPRIS P2 TSL 1 (best) BASIC14.45□□□□□ -0.16e-7■■□□□ 14.1
DDX42Q86XP3 AARS-203ENST00000565361 839 ntTSL 512.53□□□□□ -0.42e-6■■□□□ 13.8
DDX42Q86XP3 BRWD1-214ENST00000484090 429 ntTSL 224.06■■□□□ 1.444e-12■■□□□ 13.8
DDX42Q86XP3 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC23.36■■□□□ 1.334e-12■■□□□ 13.8
DDX42Q86XP3 MARS-202ENST00000447721 1328 ntTSL 219.87■□□□□ 0.772e-7■■□□□ 13.8
DDX42Q86XP3 MARS-212ENST00000548630 557 ntTSL 217.21■□□□□ 0.352e-7■■□□□ 13.8
DDX42Q86XP3 SAFB2-201ENST00000252542 3371 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.212e-7■■□□□ 13.8
DDX42Q86XP3 DDX39B-206ENST00000419338 928 ntTSL 515.01□□□□□ -0.012e-7■■□□□ 13.8
DDX42Q86XP3 SAFB2-210ENST00000591310 722 ntTSL 314.97□□□□□ -0.012e-7■■□□□ 13.8
DDX42Q86XP3 BRWD1-201ENST00000333229 10141 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.044e-12■■□□□ 13.8
DDX42Q86XP3 SAFB2-211ENST00000592599 2260 ntTSL 214.3□□□□□ -0.122e-7■■□□□ 13.8
DDX42Q86XP3 BRWD1-204ENST00000380800 7605 ntTSL 1 (best) BASIC13.22□□□□□ -0.294e-12■■□□□ 13.8
DDX42Q86XP3 ATP6V1G2-DDX39B-201ENST00000376185 2039 ntAPPRIS P1 TSL 2 BASIC13.03□□□□□ -0.322e-7■■□□□ 13.8
DDX42Q86XP3 DDX39B-208ENST00000428098 817 ntTSL 312.67□□□□□ -0.382e-7■■□□□ 13.8
DDX42Q86XP3 DDX39B-212ENST00000456662 932 ntTSL 512.67□□□□□ -0.382e-7■■□□□ 13.8
DDX42Q86XP3 DDX39B-210ENST00000431908 914 ntTSL 512.65□□□□□ -0.382e-7■■□□□ 13.8
DDX42Q86XP3 DDX39B-219ENST00000481456 5158 ntTSL 212.41□□□□□ -0.422e-7■■□□□ 13.8
DDX42Q86XP3 SAFB2-209ENST00000591123 836 ntTSL 512.04□□□□□ -0.482e-7■■□□□ 13.8
DDX42Q86XP3 DDX39B-214ENST00000458640 2003 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.492e-7■■□□□ 13.8
DDX42Q86XP3 DDX39B-201ENST00000376177 1529 ntTSL 5 BASIC11.5□□□□□ -0.572e-7■■□□□ 13.8
DDX42Q86XP3 DDX39B-220ENST00000482195 1232 ntTSL 210.98□□□□□ -0.652e-7■■□□□ 13.8
DDX42Q86XP3 DDX39B-202ENST00000396172 2133 ntAPPRIS P1 TSL 1 (best) BASIC10.29□□□□□ -0.762e-7■■□□□ 13.8
DDX42Q86XP3 DDX39B-215ENST00000462256 4027 ntTSL 29.77□□□□□ -0.852e-7■■□□□ 13.8
DDX42Q86XP3 BRWD1-212ENST00000470108 1176 ntTSL 37.45□□□□□ -1.224e-12■■□□□ 13.8
DDX42Q86XP3 BRWD1-203ENST00000342449 12929 ntTSL 1 (best) BASIC7.43□□□□□ -1.224e-12■■□□□ 13.8
DDX42Q86XP3 DDX39B-207ENST00000427214 1005 ntTSL 57.02□□□□□ -1.292e-7■■□□□ 13.8
DDX42Q86XP3 HNRNPAB-207ENST00000514633 1571 ntAPPRIS ALT2 TSL 5 BASIC29.51■■■□□ 2.318e-7■■□□□ 13.7
DDX42Q86XP3 HNRNPAB-206ENST00000506339 1747 ntAPPRIS ALT2 TSL 5 BASIC27.75■■■□□ 2.038e-7■■□□□ 13.7
DDX42Q86XP3 HNRNPAB-202ENST00000358344 1796 ntAPPRIS P4 TSL 1 (best) BASIC27.51■■□□□ 1.998e-7■■□□□ 13.7
DDX42Q86XP3 HNRNPAB-204ENST00000504898 1785 ntAPPRIS P4 TSL 1 (best) BASIC27.17■■□□□ 1.948e-7■■□□□ 13.7
DDX42Q86XP3 HNRNPAB-205ENST00000506259 1674 ntAPPRIS ALT2 TSL 1 (best) BASIC26.88■■□□□ 1.898e-7■■□□□ 13.7
DDX42Q86XP3 ZFPM1-201ENST00000319555 5380 ntAPPRIS P1 TSL 1 (best) BASIC24.73■■□□□ 1.558e-7■■□□□ 13.7
DDX42Q86XP3 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC24.22■■□□□ 1.478e-7■■□□□ 13.7
DDX42Q86XP3 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC23.5■■□□□ 1.358e-7■■□□□ 13.7
DDX42Q86XP3 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC18.93■□□□□ 0.628e-7■■□□□ 13.7
DDX42Q86XP3 ZFPM1-202ENST00000562417 497 ntTSL 318.52■□□□□ 0.568e-7■■□□□ 13.7
Retrieved 100 of 2,477 protein–RNA pairs in 172 ms