RNA–Protein interactions for RNA: ENST00000296503.9

HMGB2-201, Transcript of high mobility group box 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGB2, Length 1,889 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB2-201ENST00000296503 NISCHQ9Y2I1 1504 aa29.1■■■□□ 2.25
HMGB2-201ENST00000296503 CCDC180Q9P1Z9 1646 aa25.8■■□□□ 1.72
HMGB2-201ENST00000296503 ABCC9O60706 1549 aa25.38■■□□□ 1.65
HMGB2-201ENST00000296503 DCAF8L2P0C7V8 631 aa24.54■■□□□ 1.52
HMGB2-201ENST00000296503 RB1CC1Q8TDY2 1594 aa24.35■■□□□ 1.49
HMGB2-201ENST00000296503 NACADO15069 1562 aa24.31■■□□□ 1.48
HMGB2-201ENST00000296503 ZCCHC6Q5VYS8 1495 aaKnown RBP24.2■■□□□ 1.46
HMGB2-201ENST00000296503 MYO15BQ96JP2 1530 aa24.12■■□□□ 1.45
HMGB2-201ENST00000296503 DCAF1Q9Y4B6 1507 aa24.02■■□□□ 1.44
HMGB2-201ENST00000296503 PABPN1Q86U42 306 aaKnown RBP eCLIP23.79■■□□□ 1.4
HMGB2-201ENST00000296503 UNC13AQ9UPW8 1703 aa23.75■■□□□ 1.39
HMGB2-201ENST00000296503 SCRIBQ14160 1630 aa23.61■■□□□ 1.37
HMGB2-201ENST00000296503 BICRAQ9NZM4 1560 aa23.59■■□□□ 1.37
HMGB2-201ENST00000296503 DNAJC5BQ9UF47 199 aa23.34■■□□□ 1.33
HMGB2-201ENST00000296503 SHROOM4Q9ULL8 1493 aa23.3■■□□□ 1.32
HMGB2-201ENST00000296503 EIF4G1Q04637 1599 aaKnown RBP22.99■■□□□ 1.27
HMGB2-201ENST00000296503 CC2D2AQ9P2K1 1620 aa22.91■■□□□ 1.26
HMGB2-201ENST00000296503 CECR2Q9BXF3 1484 aa22.79■■□□□ 1.24
HMGB2-201ENST00000296503 SMARCA4P51532 1647 aa22.56■■□□□ 1.2
HMGB2-201ENST00000296503 BAZ1AQ9NRL2 1556 aaPredicted RBP22.55■■□□□ 1.2
HMGB2-201ENST00000296503 ATAD2BQ9ULI0 1458 aa22.47■■□□□ 1.19
HMGB2-201ENST00000296503 NCAPD3P42695 1498 aa22.45■■□□□ 1.19
HMGB2-201ENST00000296503 MROH2BQ7Z745 1585 aa22.44■■□□□ 1.18
HMGB2-201ENST00000296503 SMARCA2P51531 1590 aa22.43■■□□□ 1.18
HMGB2-201ENST00000296503 BAZ1BQ9UIG0 1483 aaKnown RBP22.3■■□□□ 1.16
HMGB2-201ENST00000296503 PEG3Q9GZU2 1588 aa22.3■■□□□ 1.16
HMGB2-201ENST00000296503 HMGXB3Q12766 1538 aa22.29■■□□□ 1.16
HMGB2-201ENST00000296503 WIZO95785 1651 aa22.2■■□□□ 1.14
HMGB2-201ENST00000296503 RSF1Q96T23 1441 aaPredicted RBP22.2■■□□□ 1.14
HMGB2-201ENST00000296503 NESP48681 1621 aa21.94■■□□□ 1.1
HMGB2-201ENST00000296503 TOP2AP11388 1531 aaKnown RBP21.93■■□□□ 1.1
HMGB2-201ENST00000296503 ERCC6Q03468 1493 aa21.89■■□□□ 1.09
HMGB2-201ENST00000296503 LAMC3Q9Y6N6 1575 aa21.84■■□□□ 1.09
HMGB2-201ENST00000296503 CADPSQ9ULU8 1353 aa21.84■■□□□ 1.09
HMGB2-201ENST00000296503 SUPT5HO00267 1087 aaKnown RBP21.78■■□□□ 1.08
HMGB2-201ENST00000296503 PDS5BQ9NTI5 1447 aa21.76■■□□□ 1.07
HMGB2-201ENST00000296503 CCDC88BA6NC98 1476 aa21.73■■□□□ 1.07
HMGB2-201ENST00000296503 CFTRP13569 1480 aa21.67■■□□□ 1.06
HMGB2-201ENST00000296503 KIF21AQ7Z4S6 1674 aa21.64■■□□□ 1.05
HMGB2-201ENST00000296503 CUX2O14529 1486 aa21.6■■□□□ 1.05
HMGB2-201ENST00000296503 FANCD2Q9BXW9 1451 aa21.57■■□□□ 1.04
HMGB2-201ENST00000296503 CEP164Q9UPV0 1460 aa21.54■■□□□ 1.04
HMGB2-201ENST00000296503 THOC2Q8NI27 1593 aaKnown RBP21.53■■□□□ 1.04
HMGB2-201ENST00000296503 MRC2Q9UBG0 1479 aa21.5■■□□□ 1.03
HMGB2-201ENST00000296503 PRDM2Q13029 1718 aa21.43■■□□□ 1.02
HMGB2-201ENST00000296503 WDR62O43379 1518 aa21.39■■□□□ 1.01
HMGB2-201ENST00000296503 URB2Q14146 1524 aaKnown RBP21.33■■□□□ 1.01
HMGB2-201ENST00000296503 ABCC8Q09428 1581 aa21.22■□□□□ 0.99
HMGB2-201ENST00000296503 TOPBP1Q92547 1522 aa21.21■□□□□ 0.99
HMGB2-201ENST00000296503 DNMBPQ6XZF7 1577 aa21.16■□□□□ 0.98
HMGB2-201ENST00000296503 IFT140Q96RY7 1462 aa21.08■□□□□ 0.97
HMGB2-201ENST00000296503 CUX1P39880 1505 aa21.04■□□□□ 0.96
HMGB2-201ENST00000296503 DNAJC5Q9H3Z4 198 aa21.03■□□□□ 0.96
HMGB2-201ENST00000296503 POLA1P09884 1462 aaPredicted RBP21.03■□□□□ 0.96
HMGB2-201ENST00000296503 SOGA1O94964 1423 aa21■□□□□ 0.95
HMGB2-201ENST00000296503 ZNF608Q9ULD9 1512 aaPredicted RBP21■□□□□ 0.95
HMGB2-201ENST00000296503 FGD5Q6ZNL6 1462 aa20.98■□□□□ 0.95
HMGB2-201ENST00000296503 RAD54L2Q9Y4B4 1467 aa20.98■□□□□ 0.95
HMGB2-201ENST00000296503 WRNQ14191 1432 aaPredicted RBP eCLIP20.94■□□□□ 0.949e-9■■■□□ 16.7
HMGB2-201ENST00000296503 TARBP1Q13395 1621 aaKnown RBP20.94■□□□□ 0.94
HMGB2-201ENST00000296503 AQRO60306 1485 aaKnown RBP eCLIP20.92■□□□□ 0.949e-20■■■■□ 25.7
HMGB2-201ENST00000296503 TDRD9Q8NDG6 1382 aaKnown RBP20.9■□□□□ 0.94
HMGB2-201ENST00000296503 EIF4G3O43432 1585 aaKnown RBP20.86■□□□□ 0.93
HMGB2-201ENST00000296503 TOP2BQ02880 1626 aa20.84■□□□□ 0.93
HMGB2-201ENST00000296503 SYNJ1O43426 1573 aa20.84■□□□□ 0.93
HMGB2-201ENST00000296503 OSCARQ8IYS5 282 aa20.83■□□□□ 0.92
HMGB2-201ENST00000296503 BIVM-ERCC5R4GMW8 1640 aa20.82■□□□□ 0.92
HMGB2-201ENST00000296503 FBLN2P98095 1184 aa20.77■□□□□ 0.92
HMGB2-201ENST00000296503 ABCA10Q8WWZ4 1543 aa20.76■□□□□ 0.91
HMGB2-201ENST00000296503 WDR97A6NE52 1622 aa20.74■□□□□ 0.91
HMGB2-201ENST00000296503 GAPVD1Q14C86 1478 aa20.73■□□□□ 0.91
HMGB2-201ENST00000296503 GRIN2BQ13224 1484 aa20.72■□□□□ 0.91
HMGB2-201ENST00000296503 CHMP7Q8WUX9 453 aaPredicted RBP20.68■□□□□ 0.9
HMGB2-201ENST00000296503 SNAPC4Q5SXM2 1469 aa20.68■□□□□ 0.9
HMGB2-201ENST00000296503 ABCA5Q8WWZ7 1642 aa20.64■□□□□ 0.89
HMGB2-201ENST00000296503 MAGI1Q96QZ7 1491 aaPredicted RBP20.63■□□□□ 0.89
HMGB2-201ENST00000296503 PBRM1Q86U86 1689 aa20.62■□□□□ 0.89
HMGB2-201ENST00000296503 CHD1O14646 1710 aa20.62■□□□□ 0.89
HMGB2-201ENST00000296503 SYNJ2O15056 1496 aa20.57■□□□□ 0.88
HMGB2-201ENST00000296503 TRIM41Q8WV44 630 aa20.55■□□□□ 0.88
HMGB2-201ENST00000296503 KIF27Q86VH2 1401 aa20.52■□□□□ 0.87
HMGB2-201ENST00000296503 ERICH3Q5RHP9 1530 aa20.51■□□□□ 0.87
HMGB2-201ENST00000296503 FHAD1B1AJZ9 1412 aa20.48■□□□□ 0.87
HMGB2-201ENST00000296503 ADAMTS12P58397 1594 aa20.45■□□□□ 0.86
HMGB2-201ENST00000296503 IGF1RP08069 1367 aa20.44■□□□□ 0.86
HMGB2-201ENST00000296503 GRIN2AQ12879 1464 aa20.44■□□□□ 0.86
HMGB2-201ENST00000296503 ARHGEF11O15085 1522 aa20.38■□□□□ 0.85
HMGB2-201ENST00000296503 RIMBP3CA6NJZ7 1639 aa20.38■□□□□ 0.85
HMGB2-201ENST00000296503 RIMBP3BA6NNM3 1639 aa20.38■□□□□ 0.85
HMGB2-201ENST00000296503 RIMBP3Q9UFD9 1639 aa20.38■□□□□ 0.85
HMGB2-201ENST00000296503 CLASP1Q7Z460 1538 aa20.37■□□□□ 0.85
HMGB2-201ENST00000296503 CARMIL1Q5VZK9 1371 aa20.34■□□□□ 0.85
HMGB2-201ENST00000296503 RUSC2Q8N2Y8 1516 aa20.33■□□□□ 0.85
HMGB2-201ENST00000296503 NUP160Q12769 1436 aa20.33■□□□□ 0.84
HMGB2-201ENST00000296503 CYB5RLQ6IPT4 315 aa20.33■□□□□ 0.84
HMGB2-201ENST00000296503 CEP170Q5SW79 1584 aa20.31■□□□□ 0.84
HMGB2-201ENST00000296503 CUL7Q14999 1698 aa20.31■□□□□ 0.84
HMGB2-201ENST00000296503 CHIC1Q5VXU3 224 aa20.26■□□□□ 0.83
HMGB2-201ENST00000296503 JPH4Q96JJ6 628 aa20.24■□□□□ 0.83
HMGB2-201ENST00000296503 ARAP1Q96P48 1450 aa20.21■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms