RNA–Protein interactions for RNA: ENST00000578430.1

SRSF1-202, Transcript of serine and arginine rich splicing factor 1, humanhuman

TSL 2

Gene SRSF1, Length 689 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRSF1-202ENST00000578430 NISCHQ9Y2I1 1504 aa31.15■■■□□ 2.58
SRSF1-202ENST00000578430 AEBP2Q6ZN18 517 aaPredicted RBP27.45■■□□□ 1.98
SRSF1-202ENST00000578430 CCDC180Q9P1Z9 1646 aa27.39■■□□□ 1.98
SRSF1-202ENST00000578430 ABCC9O60706 1549 aa26.56■■□□□ 1.84
SRSF1-202ENST00000578430 ZCCHC6Q5VYS8 1495 aaKnown RBP26.11■■□□□ 1.77
SRSF1-202ENST00000578430 CHIC1Q5VXU3 224 aa26.05■■□□□ 1.76
SRSF1-202ENST00000578430 DCAF1Q9Y4B6 1507 aa25.87■■□□□ 1.73
SRSF1-202ENST00000578430 MYO15BQ96JP2 1530 aa25.72■■□□□ 1.71
SRSF1-202ENST00000578430 DCAF8L2P0C7V8 631 aa25.68■■□□□ 1.7
SRSF1-202ENST00000578430 NACADO15069 1562 aa25.59■■□□□ 1.69
SRSF1-202ENST00000578430 RB1CC1Q8TDY2 1594 aa25.43■■□□□ 1.66
SRSF1-202ENST00000578430 DNAJC5BQ9UF47 199 aa25.13■■□□□ 1.61
SRSF1-202ENST00000578430 SCRIBQ14160 1630 aa24.98■■□□□ 1.59
SRSF1-202ENST00000578430 SHROOM4Q9ULL8 1493 aa24.96■■□□□ 1.59
SRSF1-202ENST00000578430 UNC13AQ9UPW8 1703 aa24.79■■□□□ 1.56
SRSF1-202ENST00000578430 PABPN1Q86U42 306 aaKnown RBP eCLIP24.7■■□□□ 1.54
SRSF1-202ENST00000578430 BICRAQ9NZM4 1560 aa24.59■■□□□ 1.53
SRSF1-202ENST00000578430 CECR2Q9BXF3 1484 aa24.13■■□□□ 1.45
SRSF1-202ENST00000578430 BAZ1AQ9NRL2 1556 aaPredicted RBP24.12■■□□□ 1.45
SRSF1-202ENST00000578430 SMARCA4P51532 1647 aa24■■□□□ 1.43
SRSF1-202ENST00000578430 RSF1Q96T23 1441 aaPredicted RBP24■■□□□ 1.43
SRSF1-202ENST00000578430 MROH2BQ7Z745 1585 aa23.99■■□□□ 1.43
SRSF1-202ENST00000578430 CC2D2AQ9P2K1 1620 aa23.99■■□□□ 1.43
SRSF1-202ENST00000578430 SUPT5HO00267 1087 aaKnown RBP23.9■■□□□ 1.42
SRSF1-202ENST00000578430 EIF4G1Q04637 1599 aaKnown RBP23.9■■□□□ 1.42
SRSF1-202ENST00000578430 PEG3Q9GZU2 1588 aa23.79■■□□□ 1.4
SRSF1-202ENST00000578430 WIZO95785 1651 aa23.75■■□□□ 1.39
SRSF1-202ENST00000578430 SMARCA2P51531 1590 aa23.74■■□□□ 1.39
SRSF1-202ENST00000578430 ATAD2BQ9ULI0 1458 aa23.7■■□□□ 1.38
SRSF1-202ENST00000578430 NCAPD3P42695 1498 aa23.61■■□□□ 1.37
SRSF1-202ENST00000578430 TOP2AP11388 1531 aaKnown RBP23.59■■□□□ 1.37
SRSF1-202ENST00000578430 SENP3Q9H4L4 574 aaPredicted RBP23.58■■□□□ 1.37
SRSF1-202ENST00000578430 HMGXB3Q12766 1538 aa23.55■■□□□ 1.36
SRSF1-202ENST00000578430 BAZ1BQ9UIG0 1483 aaKnown RBP23.55■■□□□ 1.36
SRSF1-202ENST00000578430 CCDC88BA6NC98 1476 aa23.29■■□□□ 1.32
SRSF1-202ENST00000578430 PHF23Q9BUL5 403 aaPredicted RBP23.2■■□□□ 1.3
SRSF1-202ENST00000578430 DNAJC5Q9H3Z4 198 aa23.19■■□□□ 1.3
SRSF1-202ENST00000578430 CFTRP13569 1480 aa22.96■■□□□ 1.27
SRSF1-202ENST00000578430 CADPSQ9ULU8 1353 aa22.95■■□□□ 1.26
SRSF1-202ENST00000578430 CUX2O14529 1486 aa22.93■■□□□ 1.26
SRSF1-202ENST00000578430 ERCC6Q03468 1493 aa22.92■■□□□ 1.26
SRSF1-202ENST00000578430 LAMC3Q9Y6N6 1575 aa22.86■■□□□ 1.25
SRSF1-202ENST00000578430 PRDM2Q13029 1718 aa22.82■■□□□ 1.24
SRSF1-202ENST00000578430 NESP48681 1621 aa22.77■■□□□ 1.24
SRSF1-202ENST00000578430 PDS5BQ9NTI5 1447 aa22.7■■□□□ 1.22
SRSF1-202ENST00000578430 FANCD2Q9BXW9 1451 aa22.66■■□□□ 1.22
SRSF1-202ENST00000578430 WRNQ14191 1432 aaPredicted RBP eCLIP22.62■■□□□ 1.21
SRSF1-202ENST00000578430 ABCC8Q09428 1581 aa22.61■■□□□ 1.21
SRSF1-202ENST00000578430 TRIM41Q8WV44 630 aa22.58■■□□□ 1.21
SRSF1-202ENST00000578430 CEP164Q9UPV0 1460 aa22.58■■□□□ 1.2
SRSF1-202ENST00000578430 THOC2Q8NI27 1593 aaKnown RBP22.58■■□□□ 1.2
SRSF1-202ENST00000578430 KIF21AQ7Z4S6 1674 aa22.49■■□□□ 1.19
SRSF1-202ENST00000578430 TOP2BQ02880 1626 aa22.49■■□□□ 1.19
SRSF1-202ENST00000578430 SYNJ1O43426 1573 aa22.48■■□□□ 1.19
SRSF1-202ENST00000578430 BIVM-ERCC5R4GMW8 1640 aa22.48■■□□□ 1.19
SRSF1-202ENST00000578430 CUX1P39880 1505 aa22.47■■□□□ 1.19
SRSF1-202ENST00000578430 DNMBPQ6XZF7 1577 aa22.43■■□□□ 1.18
SRSF1-202ENST00000578430 MRC2Q9UBG0 1479 aa22.39■■□□□ 1.17
SRSF1-202ENST00000578430 TOPBP1Q92547 1522 aa22.38■■□□□ 1.17
SRSF1-202ENST00000578430 URB2Q14146 1524 aaKnown RBP22.37■■□□□ 1.17
SRSF1-202ENST00000578430 WDR62O43379 1518 aa22.29■■□□□ 1.16
SRSF1-202ENST00000578430 FGD5Q6ZNL6 1462 aa22.28■■□□□ 1.16
SRSF1-202ENST00000578430 POLA1P09884 1462 aaPredicted RBP22.23■■□□□ 1.15
SRSF1-202ENST00000578430 EEA1Q15075 1411 aa22.22■■□□□ 1.15
SRSF1-202ENST00000578430 SOGA1O94964 1423 aa22.17■■□□□ 1.14
SRSF1-202ENST00000578430 ABCA10Q8WWZ4 1543 aa22.13■■□□□ 1.13
SRSF1-202ENST00000578430 KIF27Q86VH2 1401 aa22.11■■□□□ 1.13
SRSF1-202ENST00000578430 IFT140Q96RY7 1462 aa22.09■■□□□ 1.13
SRSF1-202ENST00000578430 RAD54L2Q9Y4B4 1467 aa22.09■■□□□ 1.13
SRSF1-202ENST00000578430 TARBP1Q13395 1621 aaKnown RBP22.07■■□□□ 1.12
SRSF1-202ENST00000578430 WDR97A6NE52 1622 aa22.06■■□□□ 1.12
SRSF1-202ENST00000578430 RUSC2Q8N2Y8 1516 aa22.05■■□□□ 1.12
SRSF1-202ENST00000578430 FAM9AQ8IZU1 332 aaPredicted RBP22.04■■□□□ 1.12
SRSF1-202ENST00000578430 CSRNP3Q8WYN3 585 aa22.03■■□□□ 1.12
SRSF1-202ENST00000578430 ABCA5Q8WWZ7 1642 aa21.95■■□□□ 1.1
SRSF1-202ENST00000578430 GAPVD1Q14C86 1478 aa21.93■■□□□ 1.1
SRSF1-202ENST00000578430 TDRD9Q8NDG6 1382 aaKnown RBP21.93■■□□□ 1.1
SRSF1-202ENST00000578430 IGF1RP08069 1367 aa21.91■■□□□ 1.1
SRSF1-202ENST00000578430 FOXD1Q16676 465 aa21.89■■□□□ 1.09
SRSF1-202ENST00000578430 ERICH3Q5RHP9 1530 aa21.89■■□□□ 1.09
SRSF1-202ENST00000578430 KIF21BO75037 1637 aa21.88■■□□□ 1.09
SRSF1-202ENST00000578430 PRXQ9BXM0 1461 aa21.86■■□□□ 1.09
SRSF1-202ENST00000578430 ZNF608Q9ULD9 1512 aaPredicted RBP21.85■■□□□ 1.09
SRSF1-202ENST00000578430 OSCARQ8IYS5 282 aa21.85■■□□□ 1.09
SRSF1-202ENST00000578430 AQRO60306 1485 aaKnown RBP eCLIP21.84■■□□□ 1.091e-15■■■■■ 37.4
SRSF1-202ENST00000578430 GRIN2BQ13224 1484 aa21.84■■□□□ 1.09
SRSF1-202ENST00000578430 CUL7Q14999 1698 aa21.83■■□□□ 1.09
SRSF1-202ENST00000578430 EIF4G3O43432 1585 aaKnown RBP21.82■■□□□ 1.08
SRSF1-202ENST00000578430 GOLGA3Q08378 1498 aa21.82■■□□□ 1.08
SRSF1-202ENST00000578430 PBRM1Q86U86 1689 aa21.8■■□□□ 1.08
SRSF1-202ENST00000578430 CARMIL1Q5VZK9 1371 aa21.8■■□□□ 1.08
SRSF1-202ENST00000578430 LOC105371045A0A1W2PR82 267 aa21.78■■□□□ 1.08
SRSF1-202ENST00000578430 RAPGEF2Q9Y4G8 1499 aa21.76■■□□□ 1.07
SRSF1-202ENST00000578430 FHAD1B1AJZ9 1412 aa21.72■■□□□ 1.07
SRSF1-202ENST00000578430 MAGI1Q96QZ7 1491 aaPredicted RBP21.71■■□□□ 1.07
SRSF1-202ENST00000578430 ADAMTS12P58397 1594 aa21.7■■□□□ 1.06
SRSF1-202ENST00000578430 TNIKQ9UKE5 1360 aa21.69■■□□□ 1.06
SRSF1-202ENST00000578430 SNAPC4Q5SXM2 1469 aa21.67■■□□□ 1.06
SRSF1-202ENST00000578430 UBTFP17480 764 aaKnown RBP21.67■■□□□ 1.06
SRSF1-202ENST00000578430 RIMBP3CA6NJZ7 1639 aa21.65■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms