RNA–Protein interactions for RNA: ENST00000511316.1

HMGB2-205, Transcript of high mobility group box 2, humanhuman

TSL 2

Gene HMGB2, Length 1,841 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB2-205ENST00000511316 NISCHQ9Y2I1 1504 aa29.5■■■□□ 2.31
HMGB2-205ENST00000511316 CCDC180Q9P1Z9 1646 aa26.07■■□□□ 1.76
HMGB2-205ENST00000511316 ABCC9O60706 1549 aa25.6■■□□□ 1.69
HMGB2-205ENST00000511316 DCAF8L2P0C7V8 631 aa24.6■■□□□ 1.53
HMGB2-205ENST00000511316 NACADO15069 1562 aa24.57■■□□□ 1.52
HMGB2-205ENST00000511316 ZCCHC6Q5VYS8 1495 aaKnown RBP24.57■■□□□ 1.52
HMGB2-205ENST00000511316 RB1CC1Q8TDY2 1594 aa24.55■■□□□ 1.52
HMGB2-205ENST00000511316 MYO15BQ96JP2 1530 aa24.49■■□□□ 1.51
HMGB2-205ENST00000511316 DCAF1Q9Y4B6 1507 aa24.39■■□□□ 1.5
HMGB2-205ENST00000511316 UNC13AQ9UPW8 1703 aa24.04■■□□□ 1.44
HMGB2-205ENST00000511316 PABPN1Q86U42 306 aaKnown RBP eCLIP24■■□□□ 1.43
HMGB2-205ENST00000511316 BICRAQ9NZM4 1560 aa23.95■■□□□ 1.42
HMGB2-205ENST00000511316 SCRIBQ14160 1630 aa23.83■■□□□ 1.41
HMGB2-205ENST00000511316 DNAJC5BQ9UF47 199 aa23.68■■□□□ 1.38
HMGB2-205ENST00000511316 SHROOM4Q9ULL8 1493 aa23.56■■□□□ 1.36
HMGB2-205ENST00000511316 EIF4G1Q04637 1599 aaKnown RBP23.24■■□□□ 1.31
HMGB2-205ENST00000511316 CC2D2AQ9P2K1 1620 aa23.14■■□□□ 1.29
HMGB2-205ENST00000511316 CECR2Q9BXF3 1484 aa23.05■■□□□ 1.28
HMGB2-205ENST00000511316 SMARCA4P51532 1647 aa22.83■■□□□ 1.24
HMGB2-205ENST00000511316 BAZ1AQ9NRL2 1556 aaPredicted RBP22.79■■□□□ 1.24
HMGB2-205ENST00000511316 ATAD2BQ9ULI0 1458 aa22.77■■□□□ 1.24
HMGB2-205ENST00000511316 NCAPD3P42695 1498 aa22.77■■□□□ 1.24
HMGB2-205ENST00000511316 MROH2BQ7Z745 1585 aa22.76■■□□□ 1.23
HMGB2-205ENST00000511316 PEG3Q9GZU2 1588 aa22.66■■□□□ 1.22
HMGB2-205ENST00000511316 SMARCA2P51531 1590 aa22.63■■□□□ 1.21
HMGB2-205ENST00000511316 HMGXB3Q12766 1538 aa22.56■■□□□ 1.2
HMGB2-205ENST00000511316 RSF1Q96T23 1441 aaPredicted RBP22.54■■□□□ 1.2
HMGB2-205ENST00000511316 BAZ1BQ9UIG0 1483 aaKnown RBP22.49■■□□□ 1.19
HMGB2-205ENST00000511316 WIZO95785 1651 aa22.46■■□□□ 1.19
HMGB2-205ENST00000511316 NESP48681 1621 aa22.21■■□□□ 1.15
HMGB2-205ENST00000511316 TOP2AP11388 1531 aaKnown RBP22.19■■□□□ 1.14
HMGB2-205ENST00000511316 CADPSQ9ULU8 1353 aa22.09■■□□□ 1.13
HMGB2-205ENST00000511316 LAMC3Q9Y6N6 1575 aa22.05■■□□□ 1.12
HMGB2-205ENST00000511316 CCDC88BA6NC98 1476 aa22.02■■□□□ 1.12
HMGB2-205ENST00000511316 CFTRP13569 1480 aa21.97■■□□□ 1.11
HMGB2-205ENST00000511316 ERCC6Q03468 1493 aa21.96■■□□□ 1.11
HMGB2-205ENST00000511316 SUPT5HO00267 1087 aaKnown RBP21.92■■□□□ 1.1
HMGB2-205ENST00000511316 PDS5BQ9NTI5 1447 aa21.92■■□□□ 1.1
HMGB2-205ENST00000511316 KIF21AQ7Z4S6 1674 aa21.84■■□□□ 1.09
HMGB2-205ENST00000511316 FANCD2Q9BXW9 1451 aa21.79■■□□□ 1.08
HMGB2-205ENST00000511316 THOC2Q8NI27 1593 aaKnown RBP21.79■■□□□ 1.08
HMGB2-205ENST00000511316 CUX2O14529 1486 aa21.76■■□□□ 1.07
HMGB2-205ENST00000511316 CEP164Q9UPV0 1460 aa21.7■■□□□ 1.06
HMGB2-205ENST00000511316 MRC2Q9UBG0 1479 aa21.69■■□□□ 1.06
HMGB2-205ENST00000511316 WDR62O43379 1518 aa21.64■■□□□ 1.05
HMGB2-205ENST00000511316 URB2Q14146 1524 aaKnown RBP21.61■■□□□ 1.05
HMGB2-205ENST00000511316 PRDM2Q13029 1718 aa21.61■■□□□ 1.05
HMGB2-205ENST00000511316 TOPBP1Q92547 1522 aa21.45■■□□□ 1.02
HMGB2-205ENST00000511316 ABCC8Q09428 1581 aa21.39■■□□□ 1.01
HMGB2-205ENST00000511316 DNMBPQ6XZF7 1577 aa21.37■■□□□ 1.01
HMGB2-205ENST00000511316 CUX1P39880 1505 aa21.33■■□□□ 1
HMGB2-205ENST00000511316 POLA1P09884 1462 aaPredicted RBP21.29■■□□□ 1
HMGB2-205ENST00000511316 IFT140Q96RY7 1462 aa21.28■■□□□ 1
HMGB2-205ENST00000511316 ZNF608Q9ULD9 1512 aaPredicted RBP21.27■■□□□ 1
HMGB2-205ENST00000511316 TARBP1Q13395 1621 aaKnown RBP21.23■□□□□ 0.99
HMGB2-205ENST00000511316 RAD54L2Q9Y4B4 1467 aa21.22■□□□□ 0.99
HMGB2-205ENST00000511316 DNAJC5Q9H3Z4 198 aa21.22■□□□□ 0.99
HMGB2-205ENST00000511316 FGD5Q6ZNL6 1462 aa21.21■□□□□ 0.99
HMGB2-205ENST00000511316 SOGA1O94964 1423 aa21.2■□□□□ 0.98
HMGB2-205ENST00000511316 WRNQ14191 1432 aaPredicted RBP eCLIP21.17■□□□□ 0.989e-9■■■□□ 16.7
HMGB2-205ENST00000511316 AQRO60306 1485 aaKnown RBP eCLIP21.15■□□□□ 0.989e-20■■■■□ 25.7
HMGB2-205ENST00000511316 SYNJ1O43426 1573 aa21.12■□□□□ 0.97
HMGB2-205ENST00000511316 TDRD9Q8NDG6 1382 aaKnown RBP21.11■□□□□ 0.97
HMGB2-205ENST00000511316 TOP2BQ02880 1626 aa21.1■□□□□ 0.97
HMGB2-205ENST00000511316 BIVM-ERCC5R4GMW8 1640 aa21.07■□□□□ 0.96
HMGB2-205ENST00000511316 EIF4G3O43432 1585 aaKnown RBP21.07■□□□□ 0.96
HMGB2-205ENST00000511316 ABCA10Q8WWZ4 1543 aa21.03■□□□□ 0.96
HMGB2-205ENST00000511316 WDR97A6NE52 1622 aa20.99■□□□□ 0.95
HMGB2-205ENST00000511316 CHIC1Q5VXU3 224 aa20.99■□□□□ 0.95
HMGB2-205ENST00000511316 OSCARQ8IYS5 282 aa20.94■□□□□ 0.94
HMGB2-205ENST00000511316 GAPVD1Q14C86 1478 aa20.93■□□□□ 0.94
HMGB2-205ENST00000511316 GRIN2BQ13224 1484 aa20.91■□□□□ 0.94
HMGB2-205ENST00000511316 ABCA5Q8WWZ7 1642 aa20.9■□□□□ 0.94
HMGB2-205ENST00000511316 HRCP23327 699 aa20.89■□□□□ 0.93
HMGB2-205ENST00000511316 SNAPC4Q5SXM2 1469 aa20.87■□□□□ 0.93
HMGB2-205ENST00000511316 MAGI1Q96QZ7 1491 aaPredicted RBP20.83■□□□□ 0.92
HMGB2-205ENST00000511316 FBLN2P98095 1184 aa20.8■□□□□ 0.92
HMGB2-205ENST00000511316 PBRM1Q86U86 1689 aa20.78■□□□□ 0.92
HMGB2-205ENST00000511316 CHD1O14646 1710 aa20.77■□□□□ 0.92
HMGB2-205ENST00000511316 CHMP7Q8WUX9 453 aaPredicted RBP20.77■□□□□ 0.92
HMGB2-205ENST00000511316 SYNJ2O15056 1496 aa20.77■□□□□ 0.92
HMGB2-205ENST00000511316 IGF1RP08069 1367 aa20.74■□□□□ 0.91
HMGB2-205ENST00000511316 ERICH3Q5RHP9 1530 aa20.74■□□□□ 0.91
HMGB2-205ENST00000511316 KIF27Q86VH2 1401 aa20.69■□□□□ 0.9
HMGB2-205ENST00000511316 FHAD1B1AJZ9 1412 aa20.68■□□□□ 0.9
HMGB2-205ENST00000511316 TRIM41Q8WV44 630 aa20.68■□□□□ 0.9
HMGB2-205ENST00000511316 ADAMTS12P58397 1594 aa20.67■□□□□ 0.9
HMGB2-205ENST00000511316 RUSC2Q8N2Y8 1516 aa20.65■□□□□ 0.9
HMGB2-205ENST00000511316 GRIN2AQ12879 1464 aa20.65■□□□□ 0.9
HMGB2-205ENST00000511316 CLASP1Q7Z460 1538 aa20.63■□□□□ 0.89
HMGB2-205ENST00000511316 NUP160Q12769 1436 aa20.6■□□□□ 0.89
HMGB2-205ENST00000511316 ARHGEF11O15085 1522 aa20.57■□□□□ 0.88
HMGB2-205ENST00000511316 CEP170Q5SW79 1584 aa20.56■□□□□ 0.88
HMGB2-205ENST00000511316 CARMIL1Q5VZK9 1371 aa20.55■□□□□ 0.88
HMGB2-205ENST00000511316 RIMBP3CA6NJZ7 1639 aa20.54■□□□□ 0.88
HMGB2-205ENST00000511316 RIMBP3BA6NNM3 1639 aa20.54■□□□□ 0.88
HMGB2-205ENST00000511316 RIMBP3Q9UFD9 1639 aa20.54■□□□□ 0.88
HMGB2-205ENST00000511316 CUL7Q14999 1698 aa20.47■□□□□ 0.87
HMGB2-205ENST00000511316 PCGF6Q9BYE7 350 aa20.47■□□□□ 0.87
HMGB2-205ENST00000511316 ARAP1Q96P48 1450 aa20.44■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms