RNA–Protein interactions for RNA: ENST00000506267.1

HMGB2-204, Transcript of high mobility group box 2, humanhuman

TSL 3

Gene HMGB2, Length 629 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB2-204ENST00000506267 NISCHQ9Y2I1 1504 aa55.36■■■■■ 6.45
HMGB2-204ENST00000506267 CCDC180Q9P1Z9 1646 aa49.3■■■■■ 5.48
HMGB2-204ENST00000506267 ABCC9O60706 1549 aa48.48■■■■■ 5.35
HMGB2-204ENST00000506267 RB1CC1Q8TDY2 1594 aa46.5■■■■■ 5.03
HMGB2-204ENST00000506267 NACADO15069 1562 aa46.41■■■■■ 5.02
HMGB2-204ENST00000506267 DCAF8L2P0C7V8 631 aa46.25■■■■■ 4.99
HMGB2-204ENST00000506267 MYO15BQ96JP2 1530 aa46.09■■■■■ 4.97
HMGB2-204ENST00000506267 ZCCHC6Q5VYS8 1495 aaKnown RBP46.06■■■■■ 4.96
HMGB2-204ENST00000506267 DCAF1Q9Y4B6 1507 aa45.8■■■■■ 4.92
HMGB2-204ENST00000506267 UNC13AQ9UPW8 1703 aa45.52■■■■■ 4.88
HMGB2-204ENST00000506267 PABPN1Q86U42 306 aaKnown RBP eCLIP45.27■■■■■ 4.84
HMGB2-204ENST00000506267 BICRAQ9NZM4 1560 aa45.2■■■■■ 4.83
HMGB2-204ENST00000506267 SCRIBQ14160 1630 aa44.94■■■■■ 4.79
HMGB2-204ENST00000506267 DNAJC5BQ9UF47 199 aa44.83■■■■■ 4.77
HMGB2-204ENST00000506267 SHROOM4Q9ULL8 1493 aa44.62■■■■■ 4.73
HMGB2-204ENST00000506267 EIF4G1Q04637 1599 aaKnown RBP43.97■■■■■ 4.63
HMGB2-204ENST00000506267 CC2D2AQ9P2K1 1620 aa43.86■■■■■ 4.61
HMGB2-204ENST00000506267 CECR2Q9BXF3 1484 aa43.58■■■■■ 4.57
HMGB2-204ENST00000506267 SMARCA4P51532 1647 aa43■■■■■ 4.47
HMGB2-204ENST00000506267 BAZ1AQ9NRL2 1556 aaPredicted RBP42.88■■■■■ 4.45
HMGB2-204ENST00000506267 NCAPD3P42695 1498 aa42.87■■■■■ 4.45
HMGB2-204ENST00000506267 ATAD2BQ9ULI0 1458 aa42.84■■■■■ 4.45
HMGB2-204ENST00000506267 SMARCA2P51531 1590 aa42.73■■■■■ 4.43
HMGB2-204ENST00000506267 MROH2BQ7Z745 1585 aa42.68■■■■■ 4.42
HMGB2-204ENST00000506267 PEG3Q9GZU2 1588 aa42.61■■■■■ 4.41
HMGB2-204ENST00000506267 HMGXB3Q12766 1538 aa42.6■■■■■ 4.41
HMGB2-204ENST00000506267 BAZ1BQ9UIG0 1483 aaKnown RBP42.42■■■■■ 4.38
HMGB2-204ENST00000506267 WIZO95785 1651 aa42.19■■■■■ 4.34
HMGB2-204ENST00000506267 RSF1Q96T23 1441 aaPredicted RBP42.1■■■■■ 4.33
HMGB2-204ENST00000506267 NESP48681 1621 aa41.91■■■■■ 4.3
HMGB2-204ENST00000506267 ERCC6Q03468 1493 aa41.73■■■■■ 4.27
HMGB2-204ENST00000506267 LAMC3Q9Y6N6 1575 aa41.73■■■■■ 4.27
HMGB2-204ENST00000506267 TOP2AP11388 1531 aaKnown RBP41.7■■■■■ 4.27
HMGB2-204ENST00000506267 CADPSQ9ULU8 1353 aa41.58■■■■■ 4.25
HMGB2-204ENST00000506267 CUX2O14529 1486 aa41.44■■■■■ 4.22
HMGB2-204ENST00000506267 PDS5BQ9NTI5 1447 aa41.44■■■■■ 4.22
HMGB2-204ENST00000506267 KIF21AQ7Z4S6 1674 aa41.39■■■■■ 4.22
HMGB2-204ENST00000506267 THOC2Q8NI27 1593 aaKnown RBP41.33■■■■■ 4.21
HMGB2-204ENST00000506267 CFTRP13569 1480 aa41.29■■■■■ 4.2
HMGB2-204ENST00000506267 CCDC88BA6NC98 1476 aa41.24■■■■■ 4.19
HMGB2-204ENST00000506267 FANCD2Q9BXW9 1451 aa41.09■■■■■ 4.17
HMGB2-204ENST00000506267 MRC2Q9UBG0 1479 aa41.04■■■■■ 4.16
HMGB2-204ENST00000506267 CEP164Q9UPV0 1460 aa41.03■■■■■ 4.16
HMGB2-204ENST00000506267 WDR62O43379 1518 aa40.94■■■■■ 4.14
HMGB2-204ENST00000506267 PRDM2Q13029 1718 aa40.93■■■■■ 4.14
HMGB2-204ENST00000506267 SUPT5HO00267 1087 aaKnown RBP40.75■■■■■ 4.11
HMGB2-204ENST00000506267 URB2Q14146 1524 aaKnown RBP40.73■■■■■ 4.11
HMGB2-204ENST00000506267 DNAJC5Q9H3Z4 198 aa40.51■■■■■ 4.08
HMGB2-204ENST00000506267 TOPBP1Q92547 1522 aa40.42■■■■■ 4.06
HMGB2-204ENST00000506267 ABCC8Q09428 1581 aa40.35■■■■■ 4.05
HMGB2-204ENST00000506267 DNMBPQ6XZF7 1577 aa40.33■■■■■ 4.05
HMGB2-204ENST00000506267 IFT140Q96RY7 1462 aa40.2■■■■■ 4.03
HMGB2-204ENST00000506267 ZNF608Q9ULD9 1512 aaPredicted RBP40.09■■■■■ 4.01
HMGB2-204ENST00000506267 POLA1P09884 1462 aaPredicted RBP40.07■■■■■ 4
HMGB2-204ENST00000506267 CUX1P39880 1505 aa40.05■■■■■ 4
HMGB2-204ENST00000506267 TARBP1Q13395 1621 aaKnown RBP40.03■■■■■ 4
HMGB2-204ENST00000506267 FGD5Q6ZNL6 1462 aa39.92■■■■□ 3.98
HMGB2-204ENST00000506267 RAD54L2Q9Y4B4 1467 aa39.9■■■■□ 3.98
HMGB2-204ENST00000506267 EIF4G3O43432 1585 aaKnown RBP39.88■■■■□ 3.97
HMGB2-204ENST00000506267 SOGA1O94964 1423 aa39.87■■■■□ 3.97
HMGB2-204ENST00000506267 AQRO60306 1485 aaKnown RBP eCLIP39.81■■■■□ 3.961e-19■■■■■ 30.9
HMGB2-204ENST00000506267 TDRD9Q8NDG6 1382 aaKnown RBP39.7■■■■□ 3.95
HMGB2-204ENST00000506267 OSCARQ8IYS5 282 aa39.67■■■■□ 3.94
HMGB2-204ENST00000506267 WRNQ14191 1432 aaPredicted RBP eCLIP39.65■■■■□ 3.949e-9■■■□□ 16.7
HMGB2-204ENST00000506267 WDR97A6NE52 1622 aa39.64■■■■□ 3.94
HMGB2-204ENST00000506267 BIVM-ERCC5R4GMW8 1640 aa39.62■■■■□ 3.93
HMGB2-204ENST00000506267 TOP2BQ02880 1626 aa39.61■■■■□ 3.93
HMGB2-204ENST00000506267 SYNJ1O43426 1573 aa39.6■■■■□ 3.93
HMGB2-204ENST00000506267 ABCA10Q8WWZ4 1543 aa39.53■■■■□ 3.92
HMGB2-204ENST00000506267 CHD1O14646 1710 aa39.43■■■■□ 3.9
HMGB2-204ENST00000506267 GRIN2BQ13224 1484 aa39.43■■■■□ 3.9
HMGB2-204ENST00000506267 SNAPC4Q5SXM2 1469 aa39.42■■■■□ 3.9
HMGB2-204ENST00000506267 GAPVD1Q14C86 1478 aa39.41■■■■□ 3.9
HMGB2-204ENST00000506267 ABCA5Q8WWZ7 1642 aa39.4■■■■□ 3.9
HMGB2-204ENST00000506267 MAGI1Q96QZ7 1491 aaPredicted RBP39.35■■■■□ 3.89
HMGB2-204ENST00000506267 PBRM1Q86U86 1689 aa39.34■■■■□ 3.89
HMGB2-204ENST00000506267 FBLN2P98095 1184 aa39.3■■■■□ 3.88
HMGB2-204ENST00000506267 SYNJ2O15056 1496 aa39.21■■■■□ 3.87
HMGB2-204ENST00000506267 CHMP7Q8WUX9 453 aaPredicted RBP39.17■■■■□ 3.86
HMGB2-204ENST00000506267 RIMBP3CA6NJZ7 1639 aa39.09■■■■□ 3.85
HMGB2-204ENST00000506267 RIMBP3BA6NNM3 1639 aa39.09■■■■□ 3.85
HMGB2-204ENST00000506267 RIMBP3Q9UFD9 1639 aa39.09■■■■□ 3.85
HMGB2-204ENST00000506267 ARHGEF11O15085 1522 aa39.05■■■■□ 3.84
HMGB2-204ENST00000506267 ERICH3Q5RHP9 1530 aa39.04■■■■□ 3.84
HMGB2-204ENST00000506267 CLASP1Q7Z460 1538 aa39.04■■■■□ 3.84
HMGB2-204ENST00000506267 ADAMTS12P58397 1594 aa39.03■■■■□ 3.84
HMGB2-204ENST00000506267 TRIM41Q8WV44 630 aa38.98■■■■□ 3.83
HMGB2-204ENST00000506267 FHAD1B1AJZ9 1412 aa38.94■■■■□ 3.82
HMGB2-204ENST00000506267 GRIN2AQ12879 1464 aa38.93■■■■□ 3.82
HMGB2-204ENST00000506267 KIF27Q86VH2 1401 aa38.82■■■■□ 3.81
HMGB2-204ENST00000506267 NUP160Q12769 1436 aa38.8■■■■□ 3.8
HMGB2-204ENST00000506267 CEP170Q5SW79 1584 aa38.78■■■■□ 3.8
HMGB2-204ENST00000506267 IGF1RP08069 1367 aa38.77■■■■□ 3.8
HMGB2-204ENST00000506267 ARAP1Q96P48 1450 aa38.74■■■■□ 3.79
HMGB2-204ENST00000506267 CYB5RLQ6IPT4 315 aa38.68■■■■□ 3.78
HMGB2-204ENST00000506267 CUL7Q14999 1698 aa38.61■■■■□ 3.77
HMGB2-204ENST00000506267 SHROOM2Q13796 1616 aa38.54■■■■□ 3.76
HMGB2-204ENST00000506267 ERCC6L2Q5T890 1561 aa38.49■■■■□ 3.75
HMGB2-204ENST00000506267 RUSC2Q8N2Y8 1516 aa38.48■■■■□ 3.75
HMGB2-204ENST00000506267 CARMIL1Q5VZK9 1371 aa38.48■■■■□ 3.75
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms