RNA–Protein interactions for RNA: ENST00000373316.4

PGK1-201, Transcript of phosphoglycerate kinase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PGK1, Length 4,887 nt, Biotype protein coding, Subcellular localisation Cytosol, Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PGK1-201ENST00000373316 NISCHQ9Y2I1 1504 aa21.23■□□□□ 0.99
PGK1-201ENST00000373316 DCAF8L2P0C7V8 631 aa18.42■□□□□ 0.54
PGK1-201ENST00000373316 SHROOM4Q9ULL8 1493 aa18.26■□□□□ 0.51
PGK1-201ENST00000373316 CCDC180Q9P1Z9 1646 aa18.07■□□□□ 0.48
PGK1-201ENST00000373316 ABCC9O60706 1549 aa17.81■□□□□ 0.44
PGK1-201ENST00000373316 ZCCHC6Q5VYS8 1495 aaKnown RBP17.79■□□□□ 0.44
PGK1-201ENST00000373316 SUPT5HO00267 1087 aaKnown RBP17.59■□□□□ 0.41
PGK1-201ENST00000373316 SCRIBQ14160 1630 aa17.29■□□□□ 0.36
PGK1-201ENST00000373316 DCAF1Q9Y4B6 1507 aa17.13■□□□□ 0.33
PGK1-201ENST00000373316 PABPN1Q86U42 306 aaKnown RBP eCLIP17.07■□□□□ 0.32
PGK1-201ENST00000373316 NACADO15069 1562 aa16.93■□□□□ 0.3
PGK1-201ENST00000373316 RB1CC1Q8TDY2 1594 aa16.86■□□□□ 0.29
PGK1-201ENST00000373316 CECR2Q9BXF3 1484 aa16.83■□□□□ 0.29
PGK1-201ENST00000373316 MYO15BQ96JP2 1530 aa16.79■□□□□ 0.28
PGK1-201ENST00000373316 RSF1Q96T23 1441 aaPredicted RBP16.68■□□□□ 0.26
PGK1-201ENST00000373316 UNC13AQ9UPW8 1703 aa16.66■□□□□ 0.26
PGK1-201ENST00000373316 MROH2BQ7Z745 1585 aa16.62■□□□□ 0.25
PGK1-201ENST00000373316 PELP1Q8IZL8 1130 aaKnown RBP16.59■□□□□ 0.25
PGK1-201ENST00000373316 ZEB1P37275 1124 aaPredicted RBP16.57■□□□□ 0.24
PGK1-201ENST00000373316 CHIC1Q5VXU3 224 aa16.56■□□□□ 0.24
PGK1-201ENST00000373316 EHMT2Q96KQ7 1210 aa16.52■□□□□ 0.23
PGK1-201ENST00000373316 WIZO95785 1651 aa16.51■□□□□ 0.23
PGK1-201ENST00000373316 BICRAQ9NZM4 1560 aa16.51■□□□□ 0.23
PGK1-201ENST00000373316 APLP2Q06481 763 aa16.43■□□□□ 0.22
PGK1-201ENST00000373316 FAM9AQ8IZU1 332 aaPredicted RBP16.39■□□□□ 0.21
PGK1-201ENST00000373316 LOC105371045A0A1W2PR82 267 aa16.31■□□□□ 0.2
PGK1-201ENST00000373316 BAZ1AQ9NRL2 1556 aaPredicted RBP16.29■□□□□ 0.2
PGK1-201ENST00000373316 SMARCA4P51532 1647 aa16.29■□□□□ 0.2
PGK1-201ENST00000373316 TRIM41Q8WV44 630 aa16.23■□□□□ 0.19
PGK1-201ENST00000373316 CCDC88BA6NC98 1476 aa16.14■□□□□ 0.17
PGK1-201ENST00000373316 CENPBP07199 599 aaPredicted RBP16.08■□□□□ 0.17
PGK1-201ENST00000373316 ATAD2BQ9ULI0 1458 aa16.07■□□□□ 0.16
PGK1-201ENST00000373316 DNAJC5BQ9UF47 199 aa16.06■□□□□ 0.16
PGK1-201ENST00000373316 TOP2AP11388 1531 aaKnown RBP16.05■□□□□ 0.16
PGK1-201ENST00000373316 ABCC8Q09428 1581 aa16.05■□□□□ 0.16
PGK1-201ENST00000373316 PCGF6Q9BYE7 350 aa16.03■□□□□ 0.16
PGK1-201ENST00000373316 EIF4G1Q04637 1599 aaKnown RBP16.03■□□□□ 0.16
PGK1-201ENST00000373316 BAZ1BQ9UIG0 1483 aaKnown RBP16.02■□□□□ 0.16
PGK1-201ENST00000373316 SMARCA2P51531 1590 aa16.02■□□□□ 0.15
PGK1-201ENST00000373316 MYT1Q01538 1121 aa15.98■□□□□ 0.15
PGK1-201ENST00000373316 TRIM26Q12899 539 aaPredicted RBP15.94■□□□□ 0.14
PGK1-201ENST00000373316 CC2D2AQ9P2K1 1620 aa15.83■□□□□ 0.13
PGK1-201ENST00000373316 PPARGC1BQ86YN6 1023 aaKnown RBP15.83■□□□□ 0.12
PGK1-201ENST00000373316 CCER1Q8TC90 406 aaPredicted RBP15.83■□□□□ 0.12
PGK1-201ENST00000373316 RANGAP1P46060 587 aaPredicted RBP15.83■□□□□ 0.12
PGK1-201ENST00000373316 PEG3Q9GZU2 1588 aa15.81■□□□□ 0.12
PGK1-201ENST00000373316 SOGA1O94964 1423 aa15.78■□□□□ 0.12
PGK1-201ENST00000373316 RUSC2Q8N2Y8 1516 aa15.78■□□□□ 0.12
PGK1-201ENST00000373316 HRCP23327 699 aa15.77■□□□□ 0.12
PGK1-201ENST00000373316 TTBK1Q5TCY1 1321 aaPredicted RBP15.76■□□□□ 0.11
PGK1-201ENST00000373316 UBTFP17480 764 aaKnown RBP15.75■□□□□ 0.11
PGK1-201ENST00000373316 NCAPD3P42695 1498 aa15.75■□□□□ 0.11
PGK1-201ENST00000373316 WRNQ14191 1432 aaPredicted RBP eCLIP15.69■□□□□ 0.1
PGK1-201ENST00000373316 NESP48681 1621 aa15.68■□□□□ 0.1
PGK1-201ENST00000373316 SYNJ1O43426 1573 aa15.65■□□□□ 0.1
PGK1-201ENST00000373316 HMGXB3Q12766 1538 aa15.61■□□□□ 0.09
PGK1-201ENST00000373316 CSRNP3Q8WYN3 585 aa15.55■□□□□ 0.08
PGK1-201ENST00000373316 NEFLP07196 543 aa15.53■□□□□ 0.08
PGK1-201ENST00000373316 CADPSQ9ULU8 1353 aa15.52■□□□□ 0.08
PGK1-201ENST00000373316 CFTRP13569 1480 aa15.51■□□□□ 0.07
PGK1-201ENST00000373316 CUX1P39880 1505 aa15.47■□□□□ 0.07
PGK1-201ENST00000373316 ERICH6Q7L0X2 663 aa15.44■□□□□ 0.06
PGK1-201ENST00000373316 FANCD2Q9BXW9 1451 aa15.41■□□□□ 0.06
PGK1-201ENST00000373316 RAD54L2Q9Y4B4 1467 aa15.37■□□□□ 0.05
PGK1-201ENST00000373316 RAPGEF2Q9Y4G8 1499 aa15.36■□□□□ 0.05
PGK1-201ENST00000373316 TOP2BQ02880 1626 aa15.35■□□□□ 0.05
PGK1-201ENST00000373316 FGD5Q6ZNL6 1462 aa15.32■□□□□ 0.04
PGK1-201ENST00000373316 CEP162Q5TB80 1403 aa15.32■□□□□ 0.04
PGK1-201ENST00000373316 CUX2O14529 1486 aa15.31■□□□□ 0.04
PGK1-201ENST00000373316 ATP1B4Q9UN42 357 aaPredicted RBP15.3■□□□□ 0.04
PGK1-201ENST00000373316 P3H3Q8IVL6 736 aa15.29■□□□□ 0.04
PGK1-201ENST00000373316 TDRD9Q8NDG6 1382 aaKnown RBP15.28■□□□□ 0.04
PGK1-201ENST00000373316 BIVM-ERCC5R4GMW8 1640 aa15.24■□□□□ 0.03
PGK1-201ENST00000373316 GOLGA3Q08378 1498 aa15.24■□□□□ 0.03
PGK1-201ENST00000373316 CEP164Q9UPV0 1460 aa15.24■□□□□ 0.03
PGK1-201ENST00000373316 URB2Q14146 1524 aaKnown RBP15.23■□□□□ 0.03
PGK1-201ENST00000373316 KIF21AQ7Z4S6 1674 aa15.21■□□□□ 0.03
PGK1-201ENST00000373316 KIF27Q86VH2 1401 aa15.21■□□□□ 0.03
PGK1-201ENST00000373316 TOPBP1Q92547 1522 aa15.21■□□□□ 0.03
PGK1-201ENST00000373316 POLA1P09884 1462 aaPredicted RBP15.2■□□□□ 0.02
PGK1-201ENST00000373316 TNIKQ9UKE5 1360 aa15.2■□□□□ 0.02
PGK1-201ENST00000373316 CLSPNQ9HAW4 1339 aa15.19■□□□□ 0.02
PGK1-201ENST00000373316 EEA1Q15075 1411 aa15.18■□□□□ 0.02
PGK1-201ENST00000373316 IGF1RP08069 1367 aa15.17■□□□□ 0.02
PGK1-201ENST00000373316 PDS5BQ9NTI5 1447 aa15.17■□□□□ 0.02
PGK1-201ENST00000373316 CLIP1P30622 1438 aa15.15■□□□□ 0.02
PGK1-201ENST00000373316 PRDM2Q13029 1718 aa15.14■□□□□ 0.01
PGK1-201ENST00000373316 ERCC6Q03468 1493 aa15.13■□□□□ 0.01
PGK1-201ENST00000373316 LAMC3Q9Y6N6 1575 aa15.13■□□□□ 0.01
PGK1-201ENST00000373316 CARMIL1Q5VZK9 1371 aa15.11■□□□□ 0.01
PGK1-201ENST00000373316 AQRO60306 1485 aaKnown RBP eCLIP15.11■□□□□ 0.016e-8■■■■■ 41.2
PGK1-201ENST00000373316 FBLN2P98095 1184 aa15.1■□□□□ 0.01
PGK1-201ENST00000373316 DIEXFQ68CQ4 756 aaKnown RBP15.1■□□□□ 0.01
PGK1-201ENST00000373316 DNMBPQ6XZF7 1577 aa15.1■□□□□ 0.01
PGK1-201ENST00000373316 ARID3CA6NKF2 412 aa15.09■□□□□ 0.01
PGK1-201ENST00000373316 PRXQ9BXM0 1461 aa15.08■□□□□ 0.01
PGK1-201ENST00000373316 KIF21BO75037 1637 aa15.06■□□□□ 0
PGK1-201ENST00000373316 ACIN1Q9UKV3 1341 aaKnown RBP15.05■□□□□ -0
PGK1-201ENST00000373316 ZNF608Q9ULD9 1512 aaPredicted RBP15.04■□□□□ -0
PGK1-201ENST00000373316 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.04■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms