RNA–Protein interactions for RNA: ENST00000258962.4

SRSF1-201, Transcript of serine and arginine rich splicing factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SRSF1, Length 1,513 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRSF1-201ENST00000258962 NISCHQ9Y2I1 1504 aa40.71■■■■■ 4.11
SRSF1-201ENST00000258962 CCDC180Q9P1Z9 1646 aa36.12■■■■□ 3.37
SRSF1-201ENST00000258962 ABCC9O60706 1549 aa35.42■■■■□ 3.26
SRSF1-201ENST00000258962 DCAF8L2P0C7V8 631 aa34.2■■■■□ 3.07
SRSF1-201ENST00000258962 RB1CC1Q8TDY2 1594 aa34.05■■■■□ 3.04
SRSF1-201ENST00000258962 NACADO15069 1562 aa34.01■■■■□ 3.03
SRSF1-201ENST00000258962 ZCCHC6Q5VYS8 1495 aaKnown RBP33.88■■■■□ 3.01
SRSF1-201ENST00000258962 MYO15BQ96JP2 1530 aa33.79■■■■□ 3
SRSF1-201ENST00000258962 DCAF1Q9Y4B6 1507 aa33.66■■■□□ 2.98
SRSF1-201ENST00000258962 PABPN1Q86U42 306 aaKnown RBP eCLIP33.17■■■□□ 2.9
SRSF1-201ENST00000258962 UNC13AQ9UPW8 1703 aa33.17■■■□□ 2.9
SRSF1-201ENST00000258962 SCRIBQ14160 1630 aa33■■■□□ 2.87
SRSF1-201ENST00000258962 BICRAQ9NZM4 1560 aa32.95■■■□□ 2.86
SRSF1-201ENST00000258962 SHROOM4Q9ULL8 1493 aa32.64■■■□□ 2.82
SRSF1-201ENST00000258962 DNAJC5BQ9UF47 199 aa32.49■■■□□ 2.79
SRSF1-201ENST00000258962 EIF4G1Q04637 1599 aaKnown RBP32.12■■■□□ 2.73
SRSF1-201ENST00000258962 CC2D2AQ9P2K1 1620 aa31.99■■■□□ 2.71
SRSF1-201ENST00000258962 CECR2Q9BXF3 1484 aa31.82■■■□□ 2.68
SRSF1-201ENST00000258962 BAZ1AQ9NRL2 1556 aaPredicted RBP31.56■■■□□ 2.64
SRSF1-201ENST00000258962 SMARCA4P51532 1647 aa31.55■■■□□ 2.64
SRSF1-201ENST00000258962 ATAD2BQ9ULI0 1458 aa31.42■■■□□ 2.62
SRSF1-201ENST00000258962 NCAPD3P42695 1498 aa31.4■■■□□ 2.62
SRSF1-201ENST00000258962 SMARCA2P51531 1590 aa31.38■■■□□ 2.61
SRSF1-201ENST00000258962 MROH2BQ7Z745 1585 aa31.36■■■□□ 2.61
SRSF1-201ENST00000258962 PEG3Q9GZU2 1588 aa31.22■■■□□ 2.59
SRSF1-201ENST00000258962 HMGXB3Q12766 1538 aa31.2■■■□□ 2.59
SRSF1-201ENST00000258962 BAZ1BQ9UIG0 1483 aaKnown RBP31.18■■■□□ 2.58
SRSF1-201ENST00000258962 RSF1Q96T23 1441 aaPredicted RBP31.05■■■□□ 2.56
SRSF1-201ENST00000258962 SUPT5HO00267 1087 aaKnown RBP31.01■■■□□ 2.55
SRSF1-201ENST00000258962 WIZO95785 1651 aa31.01■■■□□ 2.55
SRSF1-201ENST00000258962 TOP2AP11388 1531 aaKnown RBP30.69■■■□□ 2.5
SRSF1-201ENST00000258962 NESP48681 1621 aa30.62■■■□□ 2.49
SRSF1-201ENST00000258962 ERCC6Q03468 1493 aa30.56■■■□□ 2.48
SRSF1-201ENST00000258962 LAMC3Q9Y6N6 1575 aa30.54■■■□□ 2.48
SRSF1-201ENST00000258962 CADPSQ9ULU8 1353 aa30.52■■■□□ 2.48
SRSF1-201ENST00000258962 PDS5BQ9NTI5 1447 aa30.42■■■□□ 2.46
SRSF1-201ENST00000258962 CCDC88BA6NC98 1476 aa30.38■■■□□ 2.45
SRSF1-201ENST00000258962 CFTRP13569 1480 aa30.3■■■□□ 2.44
SRSF1-201ENST00000258962 KIF21AQ7Z4S6 1674 aa30.2■■■□□ 2.43
SRSF1-201ENST00000258962 CUX2O14529 1486 aa30.17■■■□□ 2.42
SRSF1-201ENST00000258962 FANCD2Q9BXW9 1451 aa30.15■■■□□ 2.42
SRSF1-201ENST00000258962 CEP164Q9UPV0 1460 aa30.11■■■□□ 2.41
SRSF1-201ENST00000258962 THOC2Q8NI27 1593 aaKnown RBP30.08■■■□□ 2.41
SRSF1-201ENST00000258962 MRC2Q9UBG0 1479 aa30.05■■■□□ 2.4
SRSF1-201ENST00000258962 PRDM2Q13029 1718 aa29.98■■■□□ 2.39
SRSF1-201ENST00000258962 WDR62O43379 1518 aa29.9■■■□□ 2.38
SRSF1-201ENST00000258962 URB2Q14146 1524 aaKnown RBP29.81■■■□□ 2.36
SRSF1-201ENST00000258962 CHIC1Q5VXU3 224 aa29.71■■■□□ 2.35
SRSF1-201ENST00000258962 ABCC8Q09428 1581 aa29.7■■■□□ 2.34
SRSF1-201ENST00000258962 TOPBP1Q92547 1522 aa29.65■■■□□ 2.34
SRSF1-201ENST00000258962 DNMBPQ6XZF7 1577 aa29.6■■■□□ 2.33
SRSF1-201ENST00000258962 IFT140Q96RY7 1462 aa29.49■■■□□ 2.31
SRSF1-201ENST00000258962 CUX1P39880 1505 aa29.41■■■□□ 2.3
SRSF1-201ENST00000258962 POLA1P09884 1462 aaPredicted RBP29.4■■■□□ 2.3
SRSF1-201ENST00000258962 SOGA1O94964 1423 aa29.35■■■□□ 2.29
SRSF1-201ENST00000258962 FGD5Q6ZNL6 1462 aa29.34■■■□□ 2.29
SRSF1-201ENST00000258962 ZNF608Q9ULD9 1512 aaPredicted RBP29.32■■■□□ 2.28
SRSF1-201ENST00000258962 WRNQ14191 1432 aaPredicted RBP eCLIP29.3■■■□□ 2.28
SRSF1-201ENST00000258962 DNAJC5Q9H3Z4 198 aa29.3■■■□□ 2.28
SRSF1-201ENST00000258962 RAD54L2Q9Y4B4 1467 aa29.29■■■□□ 2.28
SRSF1-201ENST00000258962 TARBP1Q13395 1621 aaKnown RBP29.28■■■□□ 2.28
SRSF1-201ENST00000258962 AQRO60306 1485 aaKnown RBP eCLIP29.2■■■□□ 2.277e-10■■■■■ 31
SRSF1-201ENST00000258962 TDRD9Q8NDG6 1382 aaKnown RBP29.18■■■□□ 2.26
SRSF1-201ENST00000258962 TOP2BQ02880 1626 aa29.17■■■□□ 2.26
SRSF1-201ENST00000258962 EIF4G3O43432 1585 aaKnown RBP29.16■■■□□ 2.26
SRSF1-201ENST00000258962 SYNJ1O43426 1573 aa29.15■■■□□ 2.26
SRSF1-201ENST00000258962 TRIM41Q8WV44 630 aa29.15■■■□□ 2.26
SRSF1-201ENST00000258962 BIVM-ERCC5R4GMW8 1640 aa29.13■■■□□ 2.25
SRSF1-201ENST00000258962 WDR97A6NE52 1622 aa29.06■■■□□ 2.24
SRSF1-201ENST00000258962 OSCARQ8IYS5 282 aa29.05■■■□□ 2.24
SRSF1-201ENST00000258962 ABCA10Q8WWZ4 1543 aa29.05■■■□□ 2.24
SRSF1-201ENST00000258962 GAPVD1Q14C86 1478 aa28.98■■■□□ 2.23
SRSF1-201ENST00000258962 GRIN2BQ13224 1484 aa28.97■■■□□ 2.23
SRSF1-201ENST00000258962 FBLN2P98095 1184 aa28.96■■■□□ 2.23
SRSF1-201ENST00000258962 SNAPC4Q5SXM2 1469 aa28.9■■■□□ 2.22
SRSF1-201ENST00000258962 MAGI1Q96QZ7 1491 aaPredicted RBP28.87■■■□□ 2.21
SRSF1-201ENST00000258962 ABCA5Q8WWZ7 1642 aa28.87■■■□□ 2.21
SRSF1-201ENST00000258962 CHMP7Q8WUX9 453 aaPredicted RBP28.87■■■□□ 2.21
SRSF1-201ENST00000258962 PBRM1Q86U86 1689 aa28.82■■■□□ 2.2
SRSF1-201ENST00000258962 CHD1O14646 1710 aa28.78■■■□□ 2.2
SRSF1-201ENST00000258962 SYNJ2O15056 1496 aa28.76■■■□□ 2.2
SRSF1-201ENST00000258962 KIF27Q86VH2 1401 aa28.71■■■□□ 2.19
SRSF1-201ENST00000258962 ERICH3Q5RHP9 1530 aa28.7■■■□□ 2.19
SRSF1-201ENST00000258962 FHAD1B1AJZ9 1412 aa28.65■■■□□ 2.18
SRSF1-201ENST00000258962 FAM9AQ8IZU1 332 aaPredicted RBP28.63■■■□□ 2.17
SRSF1-201ENST00000258962 ADAMTS12P58397 1594 aa28.61■■■□□ 2.17
SRSF1-201ENST00000258962 IGF1RP08069 1367 aa28.58■■■□□ 2.17
SRSF1-201ENST00000258962 GRIN2AQ12879 1464 aa28.57■■■□□ 2.16
SRSF1-201ENST00000258962 LOC105371045A0A1W2PR82 267 aa28.55■■■□□ 2.16
SRSF1-201ENST00000258962 RUSC2Q8N2Y8 1516 aa28.52■■■□□ 2.16
SRSF1-201ENST00000258962 EEA1Q15075 1411 aa28.49■■■□□ 2.15
SRSF1-201ENST00000258962 CLASP1Q7Z460 1538 aa28.48■■■□□ 2.15
SRSF1-201ENST00000258962 ARHGEF11O15085 1522 aa28.45■■■□□ 2.14
SRSF1-201ENST00000258962 CARMIL1Q5VZK9 1371 aa28.44■■■□□ 2.14
SRSF1-201ENST00000258962 NUP160Q12769 1436 aa28.43■■■□□ 2.14
SRSF1-201ENST00000258962 CUL7Q14999 1698 aa28.43■■■□□ 2.14
SRSF1-201ENST00000258962 RIMBP3CA6NJZ7 1639 aa28.42■■■□□ 2.14
SRSF1-201ENST00000258962 RIMBP3BA6NNM3 1639 aa28.42■■■□□ 2.14
SRSF1-201ENST00000258962 RIMBP3Q9UFD9 1639 aa28.42■■■□□ 2.14
SRSF1-201ENST00000258962 CEP170Q5SW79 1584 aa28.39■■■□□ 2.13
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms