Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 AC108673.1-201ENST00000510422 1159 ntBASIC20.23■□□□□ 0.83
PDLIM3Q53GG5 TXNL4A-210ENST00000591711 669 ntTSL 2 BASIC20.23■□□□□ 0.83
PDLIM3Q53GG5 SRP68-213ENST00000629930 165 ntTSL 5 BASIC20.23■□□□□ 0.83
PDLIM3Q53GG5 HTR6-201ENST00000289753 1984 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
PDLIM3Q53GG5 FAM120AOS-202ENST00000423591 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
PDLIM3Q53GG5 UNCX-201ENST00000316333 2048 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
PDLIM3Q53GG5 RFLNA-205ENST00000546355 2354 ntAPPRIS ALT1 TSL 1 (best) BASIC20.22■□□□□ 0.83
PDLIM3Q53GG5 MRPL23-202ENST00000381519 643 ntAPPRIS P1 TSL 3 BASIC20.22■□□□□ 0.83
PDLIM3Q53GG5 MRPL23-205ENST00000397298 736 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
PDLIM3Q53GG5 NTF6A-201ENST00000591175 560 ntBASIC20.22■□□□□ 0.83
PDLIM3Q53GG5 CACNG7-203ENST00000391767 2688 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
PDLIM3Q53GG5 NRBF2-202ENST00000435510 1816 ntTSL 2 BASIC20.22■□□□□ 0.83
PDLIM3Q53GG5 BBC3-204ENST00000449228 1827 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
PDLIM3Q53GG5 AKAP17A-202ENST00000381261 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
PDLIM3Q53GG5 CADPS-219ENST00000612439 5455 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
PDLIM3Q53GG5 AJAP1-201ENST00000378190 2383 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
PDLIM3Q53GG5 NXPH4-201ENST00000349394 1804 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
PDLIM3Q53GG5 RAD21-AS1-201ENST00000521487 2010 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
PDLIM3Q53GG5 POLR1D-201ENST00000302979 1166 ntAPPRIS P2 TSL 1 (best) BASIC20.21■□□□□ 0.83
PDLIM3Q53GG5 PLEKHJ1-201ENST00000326631 1206 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
PDLIM3Q53GG5 PRSS41-201ENST00000399677 1127 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
PDLIM3Q53GG5 GPX1-201ENST00000419349 1106 ntBASIC20.21■□□□□ 0.83
PDLIM3Q53GG5 UBE2S-203ENST00000589978 496 ntTSL 5 BASIC20.21■□□□□ 0.83
PDLIM3Q53GG5 FBXL8-206ENST00000519917 1460 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
PDLIM3Q53GG5 ZNF692-201ENST00000306601 1931 ntAPPRIS P3 TSL 1 (best) BASIC20.21■□□□□ 0.83
PDLIM3Q53GG5 C16orf59-202ENST00000483320 1709 ntAPPRIS ALT2 TSL 2 BASIC20.2■□□□□ 0.82
PDLIM3Q53GG5 VEGFA-202ENST00000324450 954 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
PDLIM3Q53GG5 VEGFA-203ENST00000372055 1286 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
PDLIM3Q53GG5 PTPMT1-203ENST00000426530 1014 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
PDLIM3Q53GG5 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
PDLIM3Q53GG5 JMJD8-202ENST00000562111 823 ntTSL 2 BASIC20.2■□□□□ 0.82
PDLIM3Q53GG5 VEGFA-226ENST00000611736 1239 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
PDLIM3Q53GG5 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
PDLIM3Q53GG5 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
PDLIM3Q53GG5 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
PDLIM3Q53GG5 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
PDLIM3Q53GG5 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
PDLIM3Q53GG5 APLP1-201ENST00000221891 2495 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
PDLIM3Q53GG5 MTMR1-202ENST00000370390 2755 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
PDLIM3Q53GG5 ZDHHC16-207ENST00000393760 2014 ntAPPRIS P4 TSL 1 (best) BASIC20.19■□□□□ 0.82
PDLIM3Q53GG5 REXO4-202ENST00000371942 2360 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
PDLIM3Q53GG5 MAP3K8-203ENST00000375322 932 ntTSL 2 BASIC20.19■□□□□ 0.82
PDLIM3Q53GG5 AC016595.1-201ENST00000559410 383 ntTSL 3 BASIC20.19■□□□□ 0.82
PDLIM3Q53GG5 FGF19-201ENST00000294312 2447 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
PDLIM3Q53GG5 SPTSSA-201ENST00000298130 2777 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
PDLIM3Q53GG5 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
PDLIM3Q53GG5 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC20.18■□□□□ 0.82
PDLIM3Q53GG5 MARCKSL1-201ENST00000329421 1699 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
PDLIM3Q53GG5 MSANTD2-201ENST00000239614 2495 ntTSL 2 BASIC20.18■□□□□ 0.82
PDLIM3Q53GG5 NRARP-201ENST00000356628 1770 ntAPPRIS P1 BASIC20.18■□□□□ 0.82
PDLIM3Q53GG5 DNMT3A-206ENST00000406659 1775 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
PDLIM3Q53GG5 KLC1-225ENST00000557575 2188 ntTSL 5 BASIC20.18■□□□□ 0.82
PDLIM3Q53GG5 BTBD7-201ENST00000298896 2621 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
PDLIM3Q53GG5 CFAP99-207ENST00000635017 2298 ntTSL 5 BASIC20.18■□□□□ 0.82
PDLIM3Q53GG5 PLBD2-202ENST00000545182 2321 ntTSL 2 BASIC20.18■□□□□ 0.82
PDLIM3Q53GG5 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
PDLIM3Q53GG5 PRKAR1B-203ENST00000403562 1917 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
PDLIM3Q53GG5 MAF-202ENST00000393350 6384 ntAPPRIS ALT2 BASIC20.17■□□□□ 0.82
PDLIM3Q53GG5 HSD11B1L-202ENST00000339423 1660 ntAPPRIS P3 TSL 1 (best) BASIC20.17■□□□□ 0.82
PDLIM3Q53GG5 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
PDLIM3Q53GG5 ENHO-201ENST00000399775 1082 ntAPPRIS P1 TSL 2 BASIC20.17■□□□□ 0.82
PDLIM3Q53GG5 LCNL1-201ENST00000408973 1839 ntAPPRIS P1 TSL 2 BASIC20.17■□□□□ 0.82
PDLIM3Q53GG5 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC20.17■□□□□ 0.82
PDLIM3Q53GG5 OTUD5-202ENST00000376488 2692 ntAPPRIS ALT1 TSL 1 (best) BASIC20.16■□□□□ 0.82
PDLIM3Q53GG5 HTRA1-201ENST00000368984 2120 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
PDLIM3Q53GG5 DOCK5-202ENST00000410074 786 ntTSL 2 BASIC20.16■□□□□ 0.82
PDLIM3Q53GG5 MIR6090-201ENST00000622481 60 ntBASIC20.16■□□□□ 0.82
PDLIM3Q53GG5 CAPNS1-216ENST00000628306 1389 ntTSL 5 BASIC20.16■□□□□ 0.82
PDLIM3Q53GG5 AC135731.1-201ENST00000569415 2548 ntBASIC20.16■□□□□ 0.82
PDLIM3Q53GG5 C8orf58-202ENST00000409586 2021 ntAPPRIS ALT2 TSL 2 BASIC20.15■□□□□ 0.82
PDLIM3Q53GG5 GPS1-204ENST00000392358 2276 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
PDLIM3Q53GG5 DEDD-212ENST00000545495 2329 ntAPPRIS P1 TSL 3 BASIC20.15■□□□□ 0.82
PDLIM3Q53GG5 AC009041.3-201ENST00000564390 879 ntTSL 5 BASIC20.15■□□□□ 0.82
PDLIM3Q53GG5 CFAP73-201ENST00000335621 1514 ntAPPRIS P1 TSL 5 BASIC20.15■□□□□ 0.82
PDLIM3Q53GG5 LYPD6B-203ENST00000409642 1577 ntAPPRIS P3 TSL 1 (best) BASIC20.15■□□□□ 0.82
PDLIM3Q53GG5 FAM220A-206ENST00000616824 2211 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
PDLIM3Q53GG5 TMEM64-203ENST00000458549 4997 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
PDLIM3Q53GG5 POU2F2-208ENST00000529952 1716 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
PDLIM3Q53GG5 SYT12-205ENST00000527043 1661 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
PDLIM3Q53GG5 SMDT1-201ENST00000331479 1567 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
PDLIM3Q53GG5 FAM189B-210ENST00000621094 1335 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
PDLIM3Q53GG5 TCAM1P-201ENST00000463377 452 ntTSL 3 BASIC20.14■□□□□ 0.81
PDLIM3Q53GG5 ACOT1-202ENST00000557556 1271 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
PDLIM3Q53GG5 U2AF1L5-201ENST00000610664 897 ntAPPRIS P5 TSL 1 (best) BASIC20.14■□□□□ 0.81
PDLIM3Q53GG5 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC20.14■□□□□ 0.81
PDLIM3Q53GG5 VRK2-202ENST00000412104 1916 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
PDLIM3Q53GG5 AC009690.3-201ENST00000569547 1902 ntAPPRIS P1 TSL 2 BASIC20.14■□□□□ 0.81
PDLIM3Q53GG5 ANKRD53-203ENST00000441349 1797 ntTSL 5 BASIC20.13■□□□□ 0.81
PDLIM3Q53GG5 DHFR-203ENST00000505337 1719 ntAPPRIS P1 TSL 2 BASIC20.13■□□□□ 0.81
PDLIM3Q53GG5 WHAMMP2-203ENST00000563942 1603 ntBASIC20.13■□□□□ 0.81
PDLIM3Q53GG5 DTNBP1-202ENST00000344537 1403 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
PDLIM3Q53GG5 KIAA2013-201ENST00000376572 2815 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
PDLIM3Q53GG5 PTPA-202ENST00000347048 1989 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
PDLIM3Q53GG5 SNX15-202ENST00000377244 1939 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
PDLIM3Q53GG5 AC091060.1-201ENST00000623524 1766 ntBASIC20.13■□□□□ 0.81
PDLIM3Q53GG5 LINC00273-201ENST00000539813 1452 ntBASIC20.12■□□□□ 0.81
PDLIM3Q53GG5 MAPK8IP1P1-201ENST00000574657 1439 ntBASIC20.12■□□□□ 0.81
PDLIM3Q53GG5 ZSCAN1-202ENST00000391700 952 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
PDLIM3Q53GG5 U2AF1-203ENST00000398137 1019 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
PDLIM3Q53GG5 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC20.12■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 21.2 ms