Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 KREMEN2-204ENST00000572045 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
CDX1P47902 DNAH9-209ENST00000579828 1986 ntTSL 2 BASIC19.88■□□□□ 0.77
CDX1P47902 MAPK8IP1P1-201ENST00000574657 1439 ntBASIC19.88■□□□□ 0.77
CDX1P47902 RP9-201ENST00000297157 1121 ntAPPRIS P2 TSL 1 (best) BASIC19.88■□□□□ 0.77
CDX1P47902 METRNL-202ENST00000570778 967 ntTSL 5 BASIC19.88■□□□□ 0.77
CDX1P47902 PRR5-ARHGAP8-202ENST00000361473 2013 ntTSL 5 BASIC19.88■□□□□ 0.77
CDX1P47902 SLC35D2-201ENST00000253270 1613 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
CDX1P47902 RFLNA-205ENST00000546355 2354 ntAPPRIS ALT1 TSL 1 (best) BASIC19.87■□□□□ 0.77
CDX1P47902 EIF5A-202ENST00000336458 1511 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
CDX1P47902 DPF1-206ENST00000420980 2227 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
CDX1P47902 ARL6IP4-211ENST00000454885 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
CDX1P47902 DVL1-201ENST00000378888 3239 ntAPPRIS ALT1 TSL 5 BASIC19.87■□□□□ 0.77
CDX1P47902 CENPV-201ENST00000299736 1165 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
CDX1P47902 PRELID2-207ENST00000511435 1894 ntAPPRIS ALT1 TSL 2 BASIC19.87■□□□□ 0.77
CDX1P47902 MKRN1-202ENST00000443720 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
CDX1P47902 MEST-211ENST00000437945 1455 ntTSL 5 BASIC19.86■□□□□ 0.77
CDX1P47902 PICALM-202ENST00000393346 2340 ntAPPRIS P3 TSL 1 (best) BASIC19.86■□□□□ 0.77
CDX1P47902 RNF19B-203ENST00000373456 2560 ntAPPRIS P3 TSL 1 (best) BASIC19.86■□□□□ 0.77
CDX1P47902 GSX2-202ENST00000503800 1181 ntTSL 5 BASIC19.86■□□□□ 0.77
CDX1P47902 SLC25A6-201ENST00000381401 2062 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
CDX1P47902 TNFRSF25-204ENST00000356876 1625 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
CDX1P47902 ITPKA-201ENST00000260386 1824 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
CDX1P47902 SOX10-202ENST00000396884 2879 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
CDX1P47902 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC19.85■□□□□ 0.77
CDX1P47902 PINK1-201ENST00000321556 2660 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
CDX1P47902 NAGS-201ENST00000293404 2182 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
CDX1P47902 ARMC6-201ENST00000269932 2412 ntAPPRIS P1 TSL 5 BASIC19.85■□□□□ 0.77
CDX1P47902 DTNBP1-212ENST00000622898 1305 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
CDX1P47902 ACSF2-203ENST00000502667 2098 ntTSL 2 BASIC19.84■□□□□ 0.77
CDX1P47902 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC19.84■□□□□ 0.77
CDX1P47902 CLDND1-226ENST00000513287 999 ntAPPRIS P1 TSL 2 BASIC19.84■□□□□ 0.77
CDX1P47902 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
CDX1P47902 TTBK2-207ENST00000567840 1961 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
CDX1P47902 C8orf58-206ENST00000614574 1955 ntAPPRIS ALT2 TSL 5 BASIC19.84■□□□□ 0.77
CDX1P47902 EID2-201ENST00000390658 1629 ntAPPRIS P1 BASIC19.84■□□□□ 0.77
CDX1P47902 RASL10A-202ENST00000401450 1720 ntTSL 2 BASIC19.83■□□□□ 0.77
CDX1P47902 DHRS13-201ENST00000378895 1921 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
CDX1P47902 AC008813.1-201ENST00000536597 885 ntBASIC19.83■□□□□ 0.77
CDX1P47902 HDGFL1-201ENST00000510882 2174 ntAPPRIS P1 BASIC19.83■□□□□ 0.76
CDX1P47902 CIB2-201ENST00000258930 1598 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
CDX1P47902 INPP4A-203ENST00000409463 1565 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
CDX1P47902 NECTIN2-202ENST00000252485 2112 ntAPPRIS P3 TSL 1 (best) BASIC19.82■□□□□ 0.76
CDX1P47902 POU2F2-208ENST00000529952 1716 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
CDX1P47902 HNRNPL-201ENST00000221419 2471 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
CDX1P47902 CACNA1H-201ENST00000348261 8208 ntAPPRIS P4 TSL 1 (best) BASIC19.82■□□□□ 0.76
CDX1P47902 C17orf97-201ENST00000360127 1839 ntAPPRIS P2 TSL 1 (best) BASIC19.82■□□□□ 0.76
CDX1P47902 SURF1-201ENST00000371974 1093 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
CDX1P47902 TSPAN4-207ENST00000397411 1025 ntAPPRIS P1 TSL 2 BASIC19.82■□□□□ 0.76
CDX1P47902 SURF1-205ENST00000615505 991 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
CDX1P47902 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC19.82■□□□□ 0.76
CDX1P47902 S1PR4-201ENST00000246115 1565 ntAPPRIS P1 BASIC19.82■□□□□ 0.76
CDX1P47902 MAZ-205ENST00000562337 1574 ntTSL 3 BASIC19.82■□□□□ 0.76
CDX1P47902 CYS1-201ENST00000381813 2738 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
CDX1P47902 TSPAN3-203ENST00000424443 1530 ntTSL 2 BASIC19.81■□□□□ 0.76
CDX1P47902 ATF4-201ENST00000337304 2019 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CDX1P47902 CLPTM1L-201ENST00000320895 2500 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CDX1P47902 EPM2A-209ENST00000638262 2679 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
CDX1P47902 ZNF470-206ENST00000601902 1640 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
CDX1P47902 AGAP3-201ENST00000335367 2675 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
CDX1P47902 MAD2L2-201ENST00000235310 1860 ntAPPRIS P1 TSL 2 BASIC19.81■□□□□ 0.76
CDX1P47902 AC110285.7-201ENST00000624417 1536 ntBASIC19.81■□□□□ 0.76
CDX1P47902 GRK4-204ENST00000503518 2136 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
CDX1P47902 PIP5K1C-203ENST00000539785 2289 ntAPPRIS ALT2 TSL 2 BASIC19.81■□□□□ 0.76
CDX1P47902 POLR3H-201ENST00000337566 1330 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
CDX1P47902 AC020928.2-201ENST00000588717 2197 ntBASIC19.8■□□□□ 0.76
CDX1P47902 ADAM22-209ENST00000439864 2576 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
CDX1P47902 RAB3IL1-202ENST00000394836 2284 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CDX1P47902 BCAP31-207ENST00000458587 1810 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
CDX1P47902 DACT1-201ENST00000335867 2571 ntAPPRIS P3 TSL 1 (best) BASIC19.8■□□□□ 0.76
CDX1P47902 SLC16A8-201ENST00000320521 1878 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CDX1P47902 SRXN1-201ENST00000381962 2698 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CDX1P47902 PIM3-201ENST00000360612 2369 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CDX1P47902 ST6GALNAC2-201ENST00000225276 2170 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CDX1P47902 P2RY2-202ENST00000393596 2174 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CDX1P47902 DYRK1B-201ENST00000323039 2535 ntAPPRIS P3 TSL 1 (best) BASIC19.78■□□□□ 0.76
CDX1P47902 CLTA-207ENST00000470744 1102 ntTSL 2 BASIC19.78■□□□□ 0.76
CDX1P47902 NDEL1-202ENST00000380025 2181 ntTSL 5 BASIC19.78■□□□□ 0.76
CDX1P47902 CEBPB-AS1-201ENST00000613921 2648 ntTSL 3 BASIC19.78■□□□□ 0.76
CDX1P47902 KANSL2-215ENST00000553086 1830 ntTSL 5 BASIC19.78■□□□□ 0.76
CDX1P47902 RPUSD1-208ENST00000567114 1835 ntTSL 2 BASIC19.77■□□□□ 0.76
CDX1P47902 GRPEL2-204ENST00000513661 546 ntTSL 2 BASIC19.77■□□□□ 0.76
CDX1P47902 TXNL4A-208ENST00000588162 752 ntTSL 2 BASIC19.77■□□□□ 0.76
CDX1P47902 POU2F2-215ENST00000560398 1788 ntTSL 5 BASIC19.77■□□□□ 0.76
CDX1P47902 VEGFA-202ENST00000324450 954 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
CDX1P47902 VEGFA-203ENST00000372055 1286 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
CDX1P47902 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
CDX1P47902 LINC01896-206ENST00000575722 1256 ntTSL 2 BASIC19.76■□□□□ 0.75
CDX1P47902 UBA52-204ENST00000595158 743 ntAPPRIS P1 TSL 3 BASIC19.76■□□□□ 0.75
CDX1P47902 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
CDX1P47902 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
CDX1P47902 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
CDX1P47902 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
CDX1P47902 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
CDX1P47902 COMMD7-201ENST00000278980 1900 ntAPPRIS P3 TSL 1 (best) BASIC19.76■□□□□ 0.75
CDX1P47902 TBC1D10A-201ENST00000215790 2077 ntAPPRIS P3 TSL 1 (best) BASIC19.75■□□□□ 0.75
CDX1P47902 RNF19B-201ENST00000235150 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
CDX1P47902 SLC16A3-214ENST00000582743 2002 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
CDX1P47902 CRNDE-206ENST00000559432 587 ntTSL 3 BASIC19.75■□□□□ 0.75
CDX1P47902 AC009041.3-201ENST00000564390 879 ntTSL 5 BASIC19.75■□□□□ 0.75
CDX1P47902 AC073111.5-206ENST00000642087 859 ntAPPRIS P1 BASIC19.75■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 65.6 ms