Protein–RNA interactions for Protein: P41002

CCNF, Cyclin-F, humanhuman

Predictions only

Length 786 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCNFP41002 BCAP31-201ENST00000345046 1589 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
CCNFP41002 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC24.81■■□□□ 1.56
CCNFP41002 DUX4L13-201ENST00000554103 1267 ntBASIC24.81■■□□□ 1.56
CCNFP41002 DUX4L15-201ENST00000611059 1267 ntBASIC24.81■■□□□ 1.56
CCNFP41002 DUX4L23-201ENST00000615195 1269 ntBASIC24.81■■□□□ 1.56
CCNFP41002 DUX4L24-201ENST00000617576 1269 ntBASIC24.81■■□□□ 1.56
CCNFP41002 DUX4L22-201ENST00000618238 1269 ntBASIC24.81■■□□□ 1.56
CCNFP41002 DUX4L20-201ENST00000619712 1269 ntBASIC24.81■■□□□ 1.56
CCNFP41002 DUX4L21-201ENST00000622058 1269 ntBASIC24.81■■□□□ 1.56
CCNFP41002 DUX4L10-201ENST00000622460 1267 ntBASIC24.81■■□□□ 1.56
CCNFP41002 DUX4L25-201ENST00000624915 1269 ntBASIC24.81■■□□□ 1.56
CCNFP41002 CHML-204ENST00000638121 920 ntTSL 2 BASIC24.81■■□□□ 1.56
CCNFP41002 NELFB-201ENST00000343053 2698 ntAPPRIS ALT2 TSL 1 (best) BASIC24.81■■□□□ 1.56
CCNFP41002 SSBP3-202ENST00000357475 1533 ntTSL 1 (best) BASIC24.81■■□□□ 1.56
CCNFP41002 MAD2L2-201ENST00000235310 1860 ntAPPRIS P1 TSL 2 BASIC24.8■■□□□ 1.56
CCNFP41002 MYPOP-201ENST00000322217 1890 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
CCNFP41002 ANKRD16-201ENST00000191063 1567 ntTSL 3 BASIC24.8■■□□□ 1.56
CCNFP41002 RNF175-201ENST00000347063 1604 ntAPPRIS P1 TSL 1 (best) BASIC24.79■■□□□ 1.56
CCNFP41002 AC092803.2-201ENST00000564287 1899 ntBASIC24.79■■□□□ 1.56
CCNFP41002 AGPS-202ENST00000409888 815 ntTSL 4 BASIC24.79■■□□□ 1.56
CCNFP41002 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC24.79■■□□□ 1.56
CCNFP41002 PICALM-224ENST00000630913 2261 ntTSL 5 BASIC24.79■■□□□ 1.56
CCNFP41002 FBXL8-201ENST00000258200 1658 ntAPPRIS P1 TSL 1 (best) BASIC24.78■■□□□ 1.56
CCNFP41002 MAZ-202ENST00000322945 2532 ntAPPRIS ALT2 TSL 1 (best) BASIC24.78■■□□□ 1.56
CCNFP41002 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC24.78■■□□□ 1.56
CCNFP41002 AP004609.3-201ENST00000610705 1884 ntBASIC24.77■■□□□ 1.56
CCNFP41002 AURKAIP1-203ENST00000338370 1072 ntAPPRIS P1 TSL 1 (best) BASIC24.77■■□□□ 1.56
CCNFP41002 TMEM147-202ENST00000392204 935 ntTSL 2 BASIC24.77■■□□□ 1.56
CCNFP41002 PCYT2-202ENST00000538721 1765 ntAPPRIS P1 TSL 1 (best) BASIC24.77■■□□□ 1.56
CCNFP41002 AC110285.7-201ENST00000624417 1536 ntBASIC24.76■■□□□ 1.55
CCNFP41002 GTPBP3-202ENST00000358792 1951 ntAPPRIS P4 TSL 2 BASIC24.76■■□□□ 1.55
CCNFP41002 BICDL2-203ENST00000572449 1984 ntAPPRIS P1 TSL 5 BASIC24.76■■□□□ 1.55
CCNFP41002 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC24.76■■□□□ 1.55
CCNFP41002 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC24.76■■□□□ 1.55
CCNFP41002 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC24.76■■□□□ 1.55
CCNFP41002 RNF166-209ENST00000567844 633 ntTSL 5 BASIC24.76■■□□□ 1.55
CCNFP41002 MIR7108-201ENST00000614319 87 ntBASIC24.76■■□□□ 1.55
CCNFP41002 DCUN1D5-201ENST00000260247 1337 ntAPPRIS P1 TSL 1 (best) BASIC24.76■■□□□ 1.55
CCNFP41002 CEBPB-201ENST00000303004 1956 ntAPPRIS P1 BASIC24.76■■□□□ 1.55
CCNFP41002 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC24.76■■□□□ 1.55
CCNFP41002 KLC1-203ENST00000347839 2271 ntTSL 5 BASIC24.75■■□□□ 1.55
CCNFP41002 HABP4-202ENST00000375251 2304 ntTSL 1 (best) BASIC24.75■■□□□ 1.55
CCNFP41002 PRR5-202ENST00000336985 1878 ntAPPRIS P1 TSL 1 (best) BASIC24.75■■□□□ 1.55
CCNFP41002 ADGRB2-204ENST00000398542 5176 ntTSL 5 BASIC24.75■■□□□ 1.55
CCNFP41002 RFFL-206ENST00000447669 2030 ntAPPRIS P1 TSL 5 BASIC24.75■■□□□ 1.55
CCNFP41002 CTBP2-211ENST00000494626 2014 ntAPPRIS P1 TSL 1 (best) BASIC24.75■■□□□ 1.55
CCNFP41002 TXNL4A-208ENST00000588162 752 ntTSL 2 BASIC24.75■■□□□ 1.55
CCNFP41002 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC24.75■■□□□ 1.55
CCNFP41002 GCLC-209ENST00000514004 2356 ntTSL 1 (best) BASIC24.75■■□□□ 1.55
CCNFP41002 NTN3-201ENST00000293973 1986 ntAPPRIS P1 TSL 1 (best) BASIC24.74■■□□□ 1.55
CCNFP41002 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC24.74■■□□□ 1.55
CCNFP41002 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC24.74■■□□□ 1.55
CCNFP41002 KAT8-206ENST00000543774 1846 ntAPPRIS P1 TSL 5 BASIC24.72■■□□□ 1.55
CCNFP41002 C14orf80-203ENST00000354560 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC24.72■■□□□ 1.55
CCNFP41002 MACF1-219ENST00000484793 834 ntTSL 2 BASIC24.72■■□□□ 1.55
CCNFP41002 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC24.72■■□□□ 1.55
CCNFP41002 RABL6-202ENST00000357466 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC24.72■■□□□ 1.55
CCNFP41002 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC24.71■■□□□ 1.55
CCNFP41002 NPAS3-203ENST00000357798 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC24.71■■□□□ 1.55
CCNFP41002 TSPAN3-203ENST00000424443 1530 ntTSL 2 BASIC24.71■■□□□ 1.55
CCNFP41002 ARHGEF7-205ENST00000375739 5375 ntTSL 1 (best) BASIC24.71■■□□□ 1.55
CCNFP41002 JAG2-201ENST00000331782 5835 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.55
CCNFP41002 GADD45G-201ENST00000252506 1065 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.54
CCNFP41002 TP53I3-201ENST00000238721 1998 ntAPPRIS P1 TSL 1 (best) BASIC24.69■■□□□ 1.54
CCNFP41002 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC24.69■■□□□ 1.54
CCNFP41002 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC24.69■■□□□ 1.54
CCNFP41002 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC24.69■■□□□ 1.54
CCNFP41002 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC24.69■■□□□ 1.54
CCNFP41002 HAS1-205ENST00000601714 2086 ntTSL 1 (best) BASIC24.69■■□□□ 1.54
CCNFP41002 GDF1-201ENST00000247005 2517 ntAPPRIS P1 TSL 1 (best) BASIC24.69■■□□□ 1.54
CCNFP41002 CERS1-204ENST00000623882 2517 ntTSL 1 (best) BASIC24.69■■□□□ 1.54
CCNFP41002 KAZALD1-201ENST00000370200 1913 ntAPPRIS P1 TSL 1 (best) BASIC24.69■■□□□ 1.54
CCNFP41002 FANCE-201ENST00000229769 2554 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
CCNFP41002 HOMER3-202ENST00000392351 1557 ntAPPRIS P3 TSL 1 (best) BASIC24.68■■□□□ 1.54
CCNFP41002 TRIM54-201ENST00000296098 2027 ntTSL 1 (best) BASIC24.68■■□□□ 1.54
CCNFP41002 KHSRP-201ENST00000398148 2993 ntAPPRIS P2 TSL 1 (best) BASIC24.68■■□□□ 1.54
CCNFP41002 LYPLA1-215ENST00000618914 2482 ntTSL 5 BASIC24.68■■□□□ 1.54
CCNFP41002 CTF1-202ENST00000395019 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC24.68■■□□□ 1.54
CCNFP41002 FUS-202ENST00000380244 1818 ntAPPRIS ALT2 TSL 1 (best) BASIC24.68■■□□□ 1.54
CCNFP41002 PRR5-ARHGAP8-202ENST00000361473 2013 ntTSL 5 BASIC24.68■■□□□ 1.54
CCNFP41002 AC142472.1-201ENST00000612013 1741 ntBASIC24.67■■□□□ 1.54
CCNFP41002 PKM-204ENST00000449901 2526 ntTSL 2 BASIC24.67■■□□□ 1.54
CCNFP41002 DRAM2-211ENST00000539140 1883 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
CCNFP41002 DCDC2C-201ENST00000399143 1476 ntAPPRIS P1 TSL 5 BASIC24.67■■□□□ 1.54
CCNFP41002 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC24.67■■□□□ 1.54
CCNFP41002 PEX7-203ENST00000541292 945 ntTSL 5 BASIC24.67■■□□□ 1.54
CCNFP41002 SNHG7-204ENST00000447221 2157 ntTSL 2 BASIC24.67■■□□□ 1.54
CCNFP41002 TAZ-201ENST00000369776 1596 ntTSL 1 (best) BASIC24.67■■□□□ 1.54
CCNFP41002 BIN1-210ENST00000393041 2272 ntTSL 1 (best) BASIC24.66■■□□□ 1.54
CCNFP41002 TTC3-225ENST00000540756 2025 ntTSL 2 BASIC24.66■■□□□ 1.54
CCNFP41002 ST6GALNAC2-201ENST00000225276 2170 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
CCNFP41002 ING2-201ENST00000302327 1189 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
CCNFP41002 HES6-205ENST00000409356 528 ntTSL 2 BASIC24.66■■□□□ 1.54
CCNFP41002 CHST11-202ENST00000546689 756 ntTSL 2 BASIC24.66■■□□□ 1.54
CCNFP41002 SLC16A11-202ENST00000447225 1779 ntAPPRIS ALT2 TSL 5 BASIC24.66■■□□□ 1.54
CCNFP41002 SHD-201ENST00000543264 2577 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
CCNFP41002 HNRNPL-201ENST00000221419 2471 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
CCNFP41002 CRTAP-202ENST00000449224 1811 ntAPPRIS ALT2 TSL 2 BASIC24.65■■□□□ 1.54
CCNFP41002 GYG2-205ENST00000398806 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC24.65■■□□□ 1.54
CCNFP41002 MEIS2-204ENST00000397620 2295 ntTSL 2 BASIC24.65■■□□□ 1.54
Retrieved 100 of 98,524 protein–RNA pairs in 59.8 ms