Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 DLG3-203ENST00000374360 5905 ntAPPRIS P2 TSL 1 (best) BASIC18.74■□□□□ 0.59
HLA-DMBP28068 NREP-202ENST00000379671 2581 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
HLA-DMBP28068 TTBK2-207ENST00000567840 1961 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
HLA-DMBP28068 SLC15A3-201ENST00000227880 2115 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
HLA-DMBP28068 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
HLA-DMBP28068 DEAF1-201ENST00000382409 2500 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
HLA-DMBP28068 TAZ-205ENST00000475699 1862 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
HLA-DMBP28068 HNRNPL-201ENST00000221419 2471 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
HLA-DMBP28068 SOX1-201ENST00000330949 2842 ntAPPRIS P1 BASIC18.73■□□□□ 0.59
HLA-DMBP28068 KLF3-AS1-202ENST00000440181 2368 ntTSL 2 BASIC18.73■□□□□ 0.59
HLA-DMBP28068 FEZ2-204ENST00000405912 1931 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
HLA-DMBP28068 P2RY2-202ENST00000393596 2174 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
HLA-DMBP28068 CSNK1E-203ENST00000396832 2791 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
HLA-DMBP28068 HLA-V-202ENST00000446817 847 ntBASIC18.72■□□□□ 0.59
HLA-DMBP28068 CRTAP-202ENST00000449224 1811 ntAPPRIS ALT2 TSL 2 BASIC18.72■□□□□ 0.59
HLA-DMBP28068 MAZ-202ENST00000322945 2532 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
HLA-DMBP28068 TMEM55B-202ENST00000398020 1696 ntAPPRIS ALT1 TSL 1 (best) BASIC18.71■□□□□ 0.59
HLA-DMBP28068 DLX2-202ENST00000466293 1852 ntTSL 2 BASIC18.71■□□□□ 0.59
HLA-DMBP28068 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC18.71■□□□□ 0.59
HLA-DMBP28068 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC18.7■□□□□ 0.58
HLA-DMBP28068 TCAM1P-201ENST00000463377 452 ntTSL 3 BASIC18.7■□□□□ 0.58
HLA-DMBP28068 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
HLA-DMBP28068 PPP1R14C-201ENST00000361131 2152 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
HLA-DMBP28068 GDF1-201ENST00000247005 2517 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
HLA-DMBP28068 CERS1-204ENST00000623882 2517 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
HLA-DMBP28068 BAMBI-201ENST00000375533 1877 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
HLA-DMBP28068 GPR25-201ENST00000304244 1224 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
HLA-DMBP28068 TMEM147-202ENST00000392204 935 ntTSL 2 BASIC18.69■□□□□ 0.58
HLA-DMBP28068 MBP-237ENST00000579129 1052 ntTSL 5 BASIC18.69■□□□□ 0.58
HLA-DMBP28068 KHSRP-201ENST00000398148 2993 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
HLA-DMBP28068 PPM1B-202ENST00000345249 1713 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
HLA-DMBP28068 TP53I3-201ENST00000238721 1998 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
HLA-DMBP28068 PCSK6-216ENST00000615296 2921 ntTSL 5 BASIC18.68■□□□□ 0.58
HLA-DMBP28068 ARPC2-201ENST00000295685 1605 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
HLA-DMBP28068 AC145676.1-201ENST00000514988 2004 ntBASIC18.68■□□□□ 0.58
HLA-DMBP28068 KLC1-203ENST00000347839 2271 ntTSL 5 BASIC18.68■□□□□ 0.58
HLA-DMBP28068 PCYT2-203ENST00000538936 5147 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
HLA-DMBP28068 TSPAN3-203ENST00000424443 1530 ntTSL 2 BASIC18.68■□□□□ 0.58
HLA-DMBP28068 SNHG7-204ENST00000447221 2157 ntTSL 2 BASIC18.68■□□□□ 0.58
HLA-DMBP28068 WHAMMP3-201ENST00000611636 1609 ntBASIC18.67■□□□□ 0.58
HLA-DMBP28068 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
HLA-DMBP28068 MBOAT7-201ENST00000245615 2529 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
HLA-DMBP28068 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC18.66■□□□□ 0.58
HLA-DMBP28068 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC18.66■□□□□ 0.58
HLA-DMBP28068 BICDL2-203ENST00000572449 1984 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
HLA-DMBP28068 ABHD12-202ENST00000376542 1725 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
HLA-DMBP28068 GSR-205ENST00000541648 1410 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
HLA-DMBP28068 EPB41L4B-202ENST00000374566 5800 ntAPPRIS P4 TSL 1 (best) BASIC18.65■□□□□ 0.58
HLA-DMBP28068 ALG2-203ENST00000476832 1880 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
HLA-DMBP28068 AC092803.2-201ENST00000564287 1899 ntBASIC18.65■□□□□ 0.58
HLA-DMBP28068 GATA2-AS1-202ENST00000468377 1578 ntTSL 2 BASIC18.65■□□□□ 0.58
HLA-DMBP28068 NSMCE4A-201ENST00000369017 1224 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
HLA-DMBP28068 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC18.65■□□□□ 0.58
HLA-DMBP28068 SLC35A2-207ENST00000445167 1739 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
HLA-DMBP28068 AC142472.1-201ENST00000612013 1741 ntBASIC18.64■□□□□ 0.57
HLA-DMBP28068 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
HLA-DMBP28068 SNX5-201ENST00000377759 2270 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
HLA-DMBP28068 TADA2B-201ENST00000310074 4350 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
HLA-DMBP28068 POU2F2-208ENST00000529952 1716 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
HLA-DMBP28068 LINC01971-201ENST00000617888 1048 ntBASIC18.63■□□□□ 0.57
HLA-DMBP28068 CHML-204ENST00000638121 920 ntTSL 2 BASIC18.63■□□□□ 0.57
HLA-DMBP28068 TSPOAP1-AS1-205ENST00000580022 2337 ntTSL 2 BASIC18.63■□□□□ 0.57
HLA-DMBP28068 ANKRD9-205ENST00000560748 1413 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
HLA-DMBP28068 CTF1-202ENST00000395019 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC18.63■□□□□ 0.57
HLA-DMBP28068 FBXL6-201ENST00000331890 1785 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
HLA-DMBP28068 ST7L-206ENST00000369666 1815 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
HLA-DMBP28068 SP5-201ENST00000375281 2033 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
HLA-DMBP28068 RNF166-209ENST00000567844 633 ntTSL 5 BASIC18.62■□□□□ 0.57
HLA-DMBP28068 G6PC3-201ENST00000269097 1533 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
HLA-DMBP28068 FUS-202ENST00000380244 1818 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
HLA-DMBP28068 STOML1-202ENST00000316911 1891 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
HLA-DMBP28068 GCLC-209ENST00000514004 2356 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
HLA-DMBP28068 BTBD6-203ENST00000392554 2176 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
HLA-DMBP28068 FOXA3-201ENST00000302177 1989 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
HLA-DMBP28068 C8orf58-206ENST00000614574 1955 ntAPPRIS ALT2 TSL 5 BASIC18.61■□□□□ 0.57
HLA-DMBP28068 UBE2J2-202ENST00000349431 1733 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
HLA-DMBP28068 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
HLA-DMBP28068 RPS2-210ENST00000530225 765 ntTSL 2 BASIC18.61■□□□□ 0.57
HLA-DMBP28068 AC020928.2-201ENST00000588717 2197 ntBASIC18.61■□□□□ 0.57
HLA-DMBP28068 GYG2-205ENST00000398806 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
HLA-DMBP28068 DVL1-201ENST00000378888 3239 ntAPPRIS ALT1 TSL 5 BASIC18.61■□□□□ 0.57
HLA-DMBP28068 SPATA33-209ENST00000579310 1490 ntAPPRIS ALT2 TSL 2 BASIC18.6■□□□□ 0.57
HLA-DMBP28068 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC18.6■□□□□ 0.57
HLA-DMBP28068 DUX4L11-201ENST00000611504 1267 ntBASIC18.6■□□□□ 0.57
HLA-DMBP28068 DUX4L12-201ENST00000614593 1267 ntBASIC18.6■□□□□ 0.57
HLA-DMBP28068 DUX4L14-201ENST00000621227 1267 ntBASIC18.6■□□□□ 0.57
HLA-DMBP28068 CDK9-201ENST00000373264 2463 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
HLA-DMBP28068 RFWD2-201ENST00000308769 2124 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
HLA-DMBP28068 ZSWIM6-201ENST00000252744 5501 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
HLA-DMBP28068 HABP4-202ENST00000375251 2304 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
HLA-DMBP28068 DUSP8P4-201ENST00000399538 1761 ntBASIC18.59■□□□□ 0.57
HLA-DMBP28068 MEIS2-204ENST00000397620 2295 ntTSL 2 BASIC18.59■□□□□ 0.57
HLA-DMBP28068 OTUD5-201ENST00000156084 2740 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.57
HLA-DMBP28068 SERF1A-202ENST00000354833 1889 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
HLA-DMBP28068 SERF1B-201ENST00000380750 1889 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
HLA-DMBP28068 TXNRD2-205ENST00000400525 1874 ntTSL 5 BASIC18.58■□□□□ 0.57
HLA-DMBP28068 FAM220A-206ENST00000616824 2211 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
HLA-DMBP28068 HSF1-204ENST00000528838 2142 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
HLA-DMBP28068 FBXL8-201ENST00000258200 1658 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
HLA-DMBP28068 MACF1-219ENST00000484793 834 ntTSL 2 BASIC18.58■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 33.1 ms