Protein–RNA interactions for Protein: P00352

ALDH1A1, Retinal dehydrogenase 1, humanhuman

Predictions only

Length 501 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ALDH1A1P00352 TCEA1-214ENST00000640382 1234 ntTSL 5 BASIC29.02■■■□□ 2.24
ALDH1A1P00352 FGF20-201ENST00000180166 1688 ntAPPRIS P1 TSL 1 (best) BASIC29.02■■■□□ 2.24
ALDH1A1P00352 SSX2IP-209ENST00000603677 1149 ntTSL 1 (best) BASIC29.01■■■□□ 2.23
ALDH1A1P00352 HAUS7-211ENST00000626181 414 ntAPPRIS ALT2 TSL 5 BASIC29.01■■■□□ 2.23
ALDH1A1P00352 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC29.01■■■□□ 2.23
ALDH1A1P00352 PRELID2-207ENST00000511435 1894 ntAPPRIS ALT1 TSL 2 BASIC29.01■■■□□ 2.23
ALDH1A1P00352 CHPT1-205ENST00000549872 2001 ntAPPRIS ALT2 TSL 5 BASIC29.01■■■□□ 2.23
ALDH1A1P00352 AC103724.3-201ENST00000564481 992 ntBASIC29■■■□□ 2.23
ALDH1A1P00352 AC027237.3-202ENST00000558617 1778 ntTSL 2 BASIC29■■■□□ 2.23
ALDH1A1P00352 IGFBP6-201ENST00000301464 1169 ntAPPRIS P2 TSL 1 (best) BASIC28.99■■■□□ 2.23
ALDH1A1P00352 IDNK-203ENST00000405990 629 ntTSL 2 BASIC28.99■■■□□ 2.23
ALDH1A1P00352 MDK-206ENST00000407067 1026 ntAPPRIS P2 TSL 1 (best) BASIC28.99■■■□□ 2.23
ALDH1A1P00352 MTX2-204ENST00000443241 799 ntTSL 3 BASIC28.99■■■□□ 2.23
ALDH1A1P00352 RASGEF1B-211ENST00000514050 537 ntTSL 2 BASIC28.99■■■□□ 2.23
ALDH1A1P00352 ATPAF1-202ENST00000371937 1827 ntAPPRIS P1 TSL 1 (best) BASIC28.99■■■□□ 2.23
ALDH1A1P00352 AL160276.1-201ENST00000636672 1312 ntAPPRIS P1 TSL 5 BASIC28.98■■■□□ 2.23
ALDH1A1P00352 C14orf80-211ENST00000450383 1107 ntAPPRIS ALT2 TSL 5 BASIC28.98■■■□□ 2.23
ALDH1A1P00352 GNPTG-204ENST00000527137 386 ntTSL 2 BASIC28.98■■■□□ 2.23
ALDH1A1P00352 PANK2-207ENST00000610179 1807 ntAPPRIS ALT2 TSL 1 (best) BASIC28.98■■■□□ 2.23
ALDH1A1P00352 HOXB3-202ENST00000460160 1525 ntTSL 5 BASIC28.98■■■□□ 2.23
ALDH1A1P00352 CSPG5-205ENST00000610462 2073 ntTSL 5 BASIC28.98■■■□□ 2.23
ALDH1A1P00352 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC28.97■■■□□ 2.23
ALDH1A1P00352 LAT-217ENST00000630764 610 ntAPPRIS ALT2 TSL 5 BASIC28.97■■■□□ 2.23
ALDH1A1P00352 CIB2-202ENST00000539011 1511 ntTSL 1 (best) BASIC28.96■■■□□ 2.23
ALDH1A1P00352 SP8-201ENST00000361443 1714 ntAPPRIS P3 TSL 1 (best) BASIC28.96■■■□□ 2.23
ALDH1A1P00352 TNFSF12-201ENST00000293825 1553 ntAPPRIS P1 TSL 1 (best) BASIC28.96■■■□□ 2.23
ALDH1A1P00352 MTERF3-201ENST00000287025 1409 ntAPPRIS P1 TSL 1 (best) BASIC28.94■■■□□ 2.22
ALDH1A1P00352 AC008406.3-201ENST00000620001 1374 ntBASIC28.94■■■□□ 2.22
ALDH1A1P00352 TIMM29-201ENST00000270502 1425 ntAPPRIS P1 TSL 1 (best) BASIC28.94■■■□□ 2.22
ALDH1A1P00352 EGFL8-220ENST00000395512 1312 ntAPPRIS P1 TSL 1 (best) BASIC28.94■■■□□ 2.22
ALDH1A1P00352 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC28.94■■■□□ 2.22
ALDH1A1P00352 FTCD-203ENST00000397746 1878 ntAPPRIS P1 TSL 1 (best) BASIC28.93■■■□□ 2.22
ALDH1A1P00352 RIPPLY2-202ENST00000369689 664 ntAPPRIS P2 TSL 1 (best) BASIC28.92■■■□□ 2.22
ALDH1A1P00352 LSM7-203ENST00000585409 512 ntTSL 2 BASIC28.92■■■□□ 2.22
ALDH1A1P00352 AC064853.4-201ENST00000641394 363 ntAPPRIS P1 BASIC28.92■■■□□ 2.22
ALDH1A1P00352 AC073934.1-201ENST00000490314 495 ntTSL 4 BASIC28.91■■■□□ 2.22
ALDH1A1P00352 ZNF606-203ENST00000547121 1196 ntTSL 2 BASIC28.91■■■□□ 2.22
ALDH1A1P00352 RNF146-205ENST00000477776 762 ntTSL 3 BASIC28.9■■■□□ 2.22
ALDH1A1P00352 ANKRD9-205ENST00000560748 1413 ntAPPRIS P1 TSL 2 BASIC28.9■■■□□ 2.22
ALDH1A1P00352 KLHDC9-203ENST00000392192 1333 ntTSL 1 (best) BASIC28.9■■■□□ 2.22
ALDH1A1P00352 TRAPPC5-202ENST00000426877 765 ntAPPRIS P1 TSL 2 BASIC28.89■■■□□ 2.22
ALDH1A1P00352 AC239859.2-201ENST00000444165 318 ntBASIC28.89■■■□□ 2.22
ALDH1A1P00352 TSPAN10-204ENST00000611590 1068 ntAPPRIS ALT2 TSL 1 (best) BASIC28.89■■■□□ 2.22
ALDH1A1P00352 AP004833.2-201ENST00000532228 1454 ntBASIC28.89■■■□□ 2.22
ALDH1A1P00352 PDXP-201ENST00000215904 2010 ntAPPRIS P1 TSL 1 (best) BASIC28.89■■■□□ 2.21
ALDH1A1P00352 VEGFA-209ENST00000425836 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC28.88■■■□□ 2.21
ALDH1A1P00352 Z92544.1-202ENST00000571933 1220 ntBASIC28.88■■■□□ 2.21
ALDH1A1P00352 ZNF787-203ENST00000610935 1925 ntAPPRIS P1 TSL 1 (best) BASIC28.87■■■□□ 2.21
ALDH1A1P00352 BARX1-202ENST00000401724 1323 ntTSL 1 (best) BASIC28.87■■■□□ 2.21
ALDH1A1P00352 GRASP-201ENST00000293662 1933 ntAPPRIS P1 TSL 1 (best) BASIC28.86■■■□□ 2.21
ALDH1A1P00352 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC28.86■■■□□ 2.21
ALDH1A1P00352 LMAN2-208ENST00000515209 1149 ntAPPRIS ALT2 TSL 3 BASIC28.86■■■□□ 2.21
ALDH1A1P00352 AC019171.1-201ENST00000601251 1056 ntBASIC28.86■■■□□ 2.21
ALDH1A1P00352 TNFRSF25-204ENST00000356876 1625 ntAPPRIS ALT2 TSL 1 (best) BASIC28.86■■■□□ 2.21
ALDH1A1P00352 COL13A1-212ENST00000520133 1833 ntTSL 5 BASIC28.85■■■□□ 2.21
ALDH1A1P00352 BOD1-202ENST00000311086 1562 ntAPPRIS P1 TSL 1 (best) BASIC28.84■■■□□ 2.21
ALDH1A1P00352 AMZ2-201ENST00000359783 1722 ntTSL 5 BASIC28.84■■■□□ 2.21
ALDH1A1P00352 MOSPD3-204ENST00000424091 1115 ntTSL 1 (best) BASIC28.84■■■□□ 2.21
ALDH1A1P00352 NRBF2-202ENST00000435510 1816 ntTSL 2 BASIC28.83■■■□□ 2.21
ALDH1A1P00352 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC28.83■■■□□ 2.21
ALDH1A1P00352 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC28.83■■■□□ 2.21
ALDH1A1P00352 ARHGDIA-203ENST00000541078 1517 ntAPPRIS P1 TSL 3 BASIC28.83■■■□□ 2.21
ALDH1A1P00352 C11orf63-202ENST00000307257 1964 ntTSL 2 BASIC28.82■■■□□ 2.2
ALDH1A1P00352 RASL10A-201ENST00000216101 1490 ntAPPRIS P1 TSL 1 (best) BASIC28.82■■■□□ 2.2
ALDH1A1P00352 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC28.82■■■□□ 2.2
ALDH1A1P00352 MARCH11-201ENST00000332432 1741 ntAPPRIS P1 TSL 5 BASIC28.82■■■□□ 2.2
ALDH1A1P00352 FADS3-201ENST00000278829 1779 ntAPPRIS P1 TSL 1 (best) BASIC28.82■■■□□ 2.2
ALDH1A1P00352 GALR2-201ENST00000329003 1364 ntAPPRIS P1 TSL 1 (best) BASIC28.81■■■□□ 2.2
ALDH1A1P00352 OSCAR-206ENST00000391760 629 ntTSL 2 BASIC28.81■■■□□ 2.2
ALDH1A1P00352 CDCA5-202ENST00000404147 1012 ntTSL 2 BASIC28.81■■■□□ 2.2
ALDH1A1P00352 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC28.81■■■□□ 2.2
ALDH1A1P00352 HERC2P9-201ENST00000507787 1023 ntTSL 1 (best) BASIC28.81■■■□□ 2.2
ALDH1A1P00352 GPRC5B-202ENST00000535671 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC28.81■■■□□ 2.2
ALDH1A1P00352 OSCAR-202ENST00000351806 1375 ntAPPRIS ALT2 TSL 1 (best) BASIC28.8■■■□□ 2.2
ALDH1A1P00352 PPP4C-214ENST00000627746 1301 ntTSL 5 BASIC28.8■■■□□ 2.2
ALDH1A1P00352 BCL7C-201ENST00000215115 1740 ntAPPRIS P1 TSL 1 (best) BASIC28.8■■■□□ 2.2
ALDH1A1P00352 SNX15-202ENST00000377244 1939 ntAPPRIS P1 TSL 1 (best) BASIC28.79■■■□□ 2.2
ALDH1A1P00352 NKX2-5-204ENST00000521848 1027 ntTSL 2 BASIC28.79■■■□□ 2.2
ALDH1A1P00352 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC28.78■■■□□ 2.2
ALDH1A1P00352 TMPO-AS1-201ENST00000546421 738 ntTSL 5 BASIC28.78■■■□□ 2.2
ALDH1A1P00352 TK2-216ENST00000564917 1156 ntTSL 3 BASIC28.78■■■□□ 2.2
ALDH1A1P00352 TMEM171-202ENST00000454765 1535 ntAPPRIS P3 TSL 1 (best) BASIC28.78■■■□□ 2.2
ALDH1A1P00352 PBX1-202ENST00000367897 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC28.78■■■□□ 2.2
ALDH1A1P00352 TMEM191C-206ENST00000432134 1129 ntAPPRIS ALT2 TSL 5 BASIC28.77■■■□□ 2.2
ALDH1A1P00352 PEMT-206ENST00000435340 960 ntTSL 5 BASIC28.77■■■□□ 2.2
ALDH1A1P00352 GRAMD4P7-201ENST00000578182 1232 ntBASIC28.77■■■□□ 2.2
ALDH1A1P00352 AL121906.1-201ENST00000606866 440 ntTSL 3 BASIC28.77■■■□□ 2.2
ALDH1A1P00352 PRR7-204ENST00000510492 1285 ntAPPRIS P1 TSL 1 (best) BASIC28.76■■■□□ 2.19
ALDH1A1P00352 ZAR1-201ENST00000327939 1460 ntAPPRIS P1 TSL 1 (best) BASIC28.75■■■□□ 2.19
ALDH1A1P00352 CREM-229ENST00000474362 1030 ntTSL 2 BASIC28.75■■■□□ 2.19
ALDH1A1P00352 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC28.75■■■□□ 2.19
ALDH1A1P00352 RDX-210ENST00000530301 1549 ntTSL 1 (best) BASIC28.74■■■□□ 2.19
ALDH1A1P00352 LDLRAD4-218ENST00000592991 1640 ntTSL 1 (best) BASIC28.74■■■□□ 2.19
ALDH1A1P00352 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC28.74■■■□□ 2.19
ALDH1A1P00352 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC28.72■■■□□ 2.19
ALDH1A1P00352 ALKAL1-201ENST00000358543 1217 ntAPPRIS P2 TSL 1 (best) BASIC28.72■■■□□ 2.19
ALDH1A1P00352 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC28.72■■■□□ 2.19
ALDH1A1P00352 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC28.72■■■□□ 2.19
ALDH1A1P00352 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC28.72■■■□□ 2.19
ALDH1A1P00352 AC100797.4-201ENST00000631653 1827 ntBASIC28.71■■■□□ 2.19
Retrieved 100 of 98,524 protein–RNA pairs in 17.8 ms