Protein–RNA interactions for Protein: O95639

CPSF4, Cleavage and polyadenylation specificity factor subunit 4, humanhuman

Known RBP Predictions only

Length 269 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4O95639 AC145676.1-201ENST00000514988 2004 ntBASIC23.38■■□□□ 1.33
CPSF4O95639 ANKRD53-201ENST00000272421 2185 ntAPPRIS P3 TSL 1 (best) BASIC23.38■■□□□ 1.33
CPSF4O95639 NELFB-201ENST00000343053 2698 ntAPPRIS ALT2 TSL 1 (best) BASIC23.37■■□□□ 1.33
CPSF4O95639 BAMBI-201ENST00000375533 1877 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
CPSF4O95639 TP53I3-201ENST00000238721 1998 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
CPSF4O95639 POU2F2-208ENST00000529952 1716 ntAPPRIS ALT2 TSL 1 (best) BASIC23.36■■□□□ 1.33
CPSF4O95639 SKOR2-203ENST00000620245 3048 ntAPPRIS ALT2 TSL 5 BASIC23.36■■□□□ 1.33
CPSF4O95639 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC23.36■■□□□ 1.33
CPSF4O95639 CHML-204ENST00000638121 920 ntTSL 2 BASIC23.36■■□□□ 1.33
CPSF4O95639 ARPC2-201ENST00000295685 1605 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
CPSF4O95639 PPM1B-202ENST00000345249 1713 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
CPSF4O95639 SLC35A2-207ENST00000445167 1739 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
CPSF4O95639 ALG2-203ENST00000476832 1880 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
CPSF4O95639 TTBK2-207ENST00000567840 1961 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
CPSF4O95639 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
CPSF4O95639 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC23.35■■□□□ 1.33
CPSF4O95639 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC23.35■■□□□ 1.33
CPSF4O95639 RPS2-210ENST00000530225 765 ntTSL 2 BASIC23.35■■□□□ 1.33
CPSF4O95639 ABHD12-202ENST00000376542 1725 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
CPSF4O95639 AC142472.1-201ENST00000612013 1741 ntBASIC23.35■■□□□ 1.33
CPSF4O95639 MACROD1-201ENST00000255681 1205 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
CPSF4O95639 AC092803.2-201ENST00000564287 1899 ntBASIC23.33■■□□□ 1.33
CPSF4O95639 GATA2-AS1-202ENST00000468377 1578 ntTSL 2 BASIC23.33■■□□□ 1.33
CPSF4O95639 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
CPSF4O95639 SLC15A3-201ENST00000227880 2115 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.32
CPSF4O95639 SH3GL1-201ENST00000269886 2516 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
CPSF4O95639 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
CPSF4O95639 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC23.32■■□□□ 1.32
CPSF4O95639 CTF1-202ENST00000395019 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC23.32■■□□□ 1.32
CPSF4O95639 KLF3-AS1-202ENST00000440181 2368 ntTSL 2 BASIC23.32■■□□□ 1.32
CPSF4O95639 FUS-202ENST00000380244 1818 ntAPPRIS ALT2 TSL 1 (best) BASIC23.31■■□□□ 1.32
CPSF4O95639 SLCO3A1-201ENST00000318445 5115 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
CPSF4O95639 AC113189.4-201ENST00000575331 5553 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
CPSF4O95639 STOML1-202ENST00000316911 1891 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
CPSF4O95639 FAM220A-201ENST00000313324 2214 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
CPSF4O95639 BICDL2-203ENST00000572449 1984 ntAPPRIS P1 TSL 5 BASIC23.31■■□□□ 1.32
CPSF4O95639 SNHG7-204ENST00000447221 2157 ntTSL 2 BASIC23.3■■□□□ 1.32
CPSF4O95639 TSPAN4-207ENST00000397411 1025 ntAPPRIS P1 TSL 2 BASIC23.3■■□□□ 1.32
CPSF4O95639 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC23.3■■□□□ 1.32
CPSF4O95639 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC23.3■■□□□ 1.32
CPSF4O95639 LINC01971-201ENST00000617888 1048 ntBASIC23.3■■□□□ 1.32
CPSF4O95639 ANKRD9-205ENST00000560748 1413 ntAPPRIS P1 TSL 2 BASIC23.3■■□□□ 1.32
CPSF4O95639 PPAN-202ENST00000393793 1575 ntTSL 5 BASIC23.3■■□□□ 1.32
CPSF4O95639 UBE2J2-202ENST00000349431 1733 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
CPSF4O95639 GTF2IP1-204ENST00000616377 2632 ntTSL 2 BASIC23.29■■□□□ 1.32
CPSF4O95639 SOX1-201ENST00000330949 2842 ntAPPRIS P1 BASIC23.29■■□□□ 1.32
CPSF4O95639 G6PC3-201ENST00000269097 1533 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
CPSF4O95639 CMC4-202ENST00000369484 1107 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
CPSF4O95639 CRIM1-201ENST00000280527 5912 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
CPSF4O95639 TXNRD2-205ENST00000400525 1874 ntTSL 5 BASIC23.28■■□□□ 1.32
CPSF4O95639 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
CPSF4O95639 IGFBPL1-201ENST00000377694 1093 ntAPPRIS P1 TSL 2 BASIC23.28■■□□□ 1.32
CPSF4O95639 CHST11-202ENST00000546689 756 ntTSL 2 BASIC23.28■■□□□ 1.32
CPSF4O95639 SPATA33-209ENST00000579310 1490 ntAPPRIS ALT2 TSL 2 BASIC23.28■■□□□ 1.32
CPSF4O95639 PPP1R14C-201ENST00000361131 2152 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
CPSF4O95639 ARPC2-202ENST00000315717 1505 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
CPSF4O95639 ST7L-206ENST00000369666 1815 ntTSL 1 (best) BASIC23.27■■□□□ 1.32
CPSF4O95639 HNRNPL-201ENST00000221419 2471 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
CPSF4O95639 MAZ-202ENST00000322945 2532 ntAPPRIS ALT2 TSL 1 (best) BASIC23.26■■□□□ 1.31
CPSF4O95639 AC135731.1-201ENST00000569415 2548 ntBASIC23.26■■□□□ 1.31
CPSF4O95639 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
CPSF4O95639 FOXA3-201ENST00000302177 1989 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
CPSF4O95639 FBXL6-201ENST00000331890 1785 ntAPPRIS P3 TSL 1 (best) BASIC23.26■■□□□ 1.31
CPSF4O95639 GDF1-201ENST00000247005 2517 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
CPSF4O95639 CERS1-204ENST00000623882 2517 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
CPSF4O95639 LMTK3-201ENST00000270238 4972 ntAPPRIS P2 TSL 1 (best) BASIC23.26■■□□□ 1.31
CPSF4O95639 DUSP8P4-201ENST00000399538 1761 ntBASIC23.25■■□□□ 1.31
CPSF4O95639 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC23.25■■□□□ 1.31
CPSF4O95639 DUX4L13-201ENST00000554103 1267 ntBASIC23.25■■□□□ 1.31
CPSF4O95639 DUX4L15-201ENST00000611059 1267 ntBASIC23.25■■□□□ 1.31
CPSF4O95639 DUX4L23-201ENST00000615195 1269 ntBASIC23.25■■□□□ 1.31
CPSF4O95639 DUX4L24-201ENST00000617576 1269 ntBASIC23.25■■□□□ 1.31
CPSF4O95639 DUX4L22-201ENST00000618238 1269 ntBASIC23.25■■□□□ 1.31
CPSF4O95639 DUX4L20-201ENST00000619712 1269 ntBASIC23.25■■□□□ 1.31
CPSF4O95639 DUX4L21-201ENST00000622058 1269 ntBASIC23.25■■□□□ 1.31
CPSF4O95639 DUX4L10-201ENST00000622460 1267 ntBASIC23.25■■□□□ 1.31
CPSF4O95639 DUX4L25-201ENST00000624915 1269 ntBASIC23.25■■□□□ 1.31
CPSF4O95639 MYPOP-201ENST00000322217 1890 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
CPSF4O95639 KLC1-203ENST00000347839 2271 ntTSL 5 BASIC23.25■■□□□ 1.31
CPSF4O95639 SRP68-202ENST00000539137 2386 ntTSL 2 BASIC23.25■■□□□ 1.31
CPSF4O95639 BTBD6-203ENST00000392554 2176 ntAPPRIS P2 TSL 1 (best) BASIC23.24■■□□□ 1.31
CPSF4O95639 NRG2-203ENST00000340391 1944 ntTSL 5 BASIC23.24■■□□□ 1.31
CPSF4O95639 SOWAHD-201ENST00000343905 1552 ntAPPRIS P1 BASIC23.24■■□□□ 1.31
CPSF4O95639 GTPBP3-202ENST00000358792 1951 ntAPPRIS P4 TSL 2 BASIC23.24■■□□□ 1.31
CPSF4O95639 GYG2-205ENST00000398806 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC23.24■■□□□ 1.31
CPSF4O95639 SP5-201ENST00000375281 2033 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
CPSF4O95639 TMEM125-202ENST00000439858 1786 ntAPPRIS P1 TSL 2 BASIC23.24■■□□□ 1.31
CPSF4O95639 NREP-202ENST00000379671 2581 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
CPSF4O95639 SERF1A-202ENST00000354833 1889 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
CPSF4O95639 SERF1B-201ENST00000380750 1889 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
CPSF4O95639 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
CPSF4O95639 PDK1-202ENST00000392571 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC23.23■■□□□ 1.31
CPSF4O95639 R3HCC1-201ENST00000265806 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC23.23■■□□□ 1.31
CPSF4O95639 LAGE3-201ENST00000357360 949 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
CPSF4O95639 TSPOAP1-AS1-205ENST00000580022 2337 ntTSL 2 BASIC23.23■■□□□ 1.31
CPSF4O95639 DEAF1-201ENST00000382409 2500 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
CPSF4O95639 ECHDC3-201ENST00000379215 1649 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
CPSF4O95639 MBOAT7-201ENST00000245615 2529 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
CPSF4O95639 LDLRAD3-203ENST00000528989 1879 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
CPSF4O95639 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC23.22■■□□□ 1.31
Retrieved 100 of 98,524 protein–RNA pairs in 34 ms