Protein–RNA interactions for Protein: O15116

LSM1, U6 snRNA-associated Sm-like protein LSm1, humanhuman

Known RBP Predictions only

Length 133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1O15116 FOXA3-201ENST00000302177 1989 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
LSM1O15116 HGH1-207ENST00000628266 258 ntTSL 5 BASIC23.73■■□□□ 1.39
LSM1O15116 PPP1R14C-201ENST00000361131 2152 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
LSM1O15116 PPAN-202ENST00000393793 1575 ntTSL 5 BASIC23.73■■□□□ 1.39
LSM1O15116 UBE2J2-202ENST00000349431 1733 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
LSM1O15116 STOML1-202ENST00000316911 1891 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
LSM1O15116 ANKRD9-205ENST00000560748 1413 ntAPPRIS P1 TSL 2 BASIC23.72■■□□□ 1.39
LSM1O15116 ABHD12-202ENST00000376542 1725 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
LSM1O15116 SH3GL1-201ENST00000269886 2516 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
LSM1O15116 KLF3-AS1-202ENST00000440181 2368 ntTSL 2 BASIC23.71■■□□□ 1.39
LSM1O15116 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC23.71■■□□□ 1.39
LSM1O15116 ST7L-206ENST00000369666 1815 ntTSL 1 (best) BASIC23.7■■□□□ 1.39
LSM1O15116 CHML-204ENST00000638121 920 ntTSL 2 BASIC23.7■■□□□ 1.38
LSM1O15116 MAGI2-215ENST00000628980 6212 ntTSL 5 BASIC23.7■■□□□ 1.38
LSM1O15116 SP5-201ENST00000375281 2033 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
LSM1O15116 R3HCC1-201ENST00000265806 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC23.7■■□□□ 1.38
LSM1O15116 DDX42-201ENST00000359353 2783 ntTSL 5 BASIC23.69■■□□□ 1.38
LSM1O15116 MYPOP-201ENST00000322217 1890 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
LSM1O15116 SERF1A-202ENST00000354833 1889 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
LSM1O15116 SERF1B-201ENST00000380750 1889 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
LSM1O15116 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
LSM1O15116 SNHG7-204ENST00000447221 2157 ntTSL 2 BASIC23.69■■□□□ 1.38
LSM1O15116 GTF2IP1-204ENST00000616377 2632 ntTSL 2 BASIC23.69■■□□□ 1.38
LSM1O15116 GATA2-AS1-202ENST00000468377 1578 ntTSL 2 BASIC23.69■■□□□ 1.38
LSM1O15116 GTPBP3-202ENST00000358792 1951 ntAPPRIS P4 TSL 2 BASIC23.69■■□□□ 1.38
LSM1O15116 G6PC3-201ENST00000269097 1533 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
LSM1O15116 KAZALD1-201ENST00000370200 1913 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
LSM1O15116 SPATA33-209ENST00000579310 1490 ntAPPRIS ALT2 TSL 2 BASIC23.68■■□□□ 1.38
LSM1O15116 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
LSM1O15116 FBXL8-201ENST00000258200 1658 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
LSM1O15116 SRP68-202ENST00000539137 2386 ntTSL 2 BASIC23.68■■□□□ 1.38
LSM1O15116 RPS2P35-201ENST00000443417 897 ntBASIC23.68■■□□□ 1.38
LSM1O15116 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC23.68■■□□□ 1.38
LSM1O15116 LINC01971-201ENST00000617888 1048 ntBASIC23.68■■□□□ 1.38
LSM1O15116 DNAH9-209ENST00000579828 1986 ntTSL 2 BASIC23.68■■□□□ 1.38
LSM1O15116 NRG2-203ENST00000340391 1944 ntTSL 5 BASIC23.68■■□□□ 1.38
LSM1O15116 SPG21-201ENST00000204566 1822 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
LSM1O15116 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC23.67■■□□□ 1.38
LSM1O15116 ECHDC3-201ENST00000379215 1649 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
LSM1O15116 EVA1C-201ENST00000300255 1998 ntAPPRIS P3 TSL 1 (best) BASIC23.67■■□□□ 1.38
LSM1O15116 PRR5-202ENST00000336985 1878 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
LSM1O15116 DRAM2-211ENST00000539140 1883 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
LSM1O15116 TSGA13-204ENST00000456951 2046 ntAPPRIS P2 TSL 2 BASIC23.66■■□□□ 1.38
LSM1O15116 PDK1-202ENST00000392571 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC23.66■■□□□ 1.38
LSM1O15116 NELFB-201ENST00000343053 2698 ntAPPRIS ALT2 TSL 1 (best) BASIC23.66■■□□□ 1.38
LSM1O15116 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC23.66■■□□□ 1.38
LSM1O15116 TBX1-201ENST00000329705 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC23.66■■□□□ 1.38
LSM1O15116 SNX5-201ENST00000377759 2270 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
LSM1O15116 CTBP2-211ENST00000494626 2014 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
LSM1O15116 SOWAHD-201ENST00000343905 1552 ntAPPRIS P1 BASIC23.65■■□□□ 1.38
LSM1O15116 HSF1-204ENST00000528838 2142 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
LSM1O15116 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC23.65■■□□□ 1.38
LSM1O15116 AC010907.1-201ENST00000441632 807 ntTSL 3 BASIC23.65■■□□□ 1.38
LSM1O15116 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC23.65■■□□□ 1.38
LSM1O15116 AC020928.2-201ENST00000588717 2197 ntBASIC23.65■■□□□ 1.38
LSM1O15116 GTF2E2-201ENST00000355904 1762 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
LSM1O15116 TMEM125-202ENST00000439858 1786 ntAPPRIS P1 TSL 2 BASIC23.65■■□□□ 1.38
LSM1O15116 ARPC2-202ENST00000315717 1505 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.38
LSM1O15116 BTBD6-203ENST00000392554 2176 ntAPPRIS P2 TSL 1 (best) BASIC23.64■■□□□ 1.38
LSM1O15116 ZBTB10-204ENST00000455036 5458 ntAPPRIS P3 TSL 2 BASIC23.64■■□□□ 1.38
LSM1O15116 GYG2-205ENST00000398806 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC23.64■■□□□ 1.38
LSM1O15116 C8orf58-206ENST00000614574 1955 ntAPPRIS ALT2 TSL 5 BASIC23.64■■□□□ 1.38
LSM1O15116 MACROD1-201ENST00000255681 1205 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
LSM1O15116 FBXL6-201ENST00000331890 1785 ntAPPRIS P3 TSL 1 (best) BASIC23.64■■□□□ 1.37
LSM1O15116 PCYT2-202ENST00000538721 1765 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
LSM1O15116 U2AF1-204ENST00000459639 1675 ntTSL 1 (best) BASIC23.64■■□□□ 1.37
LSM1O15116 U2AF1L5-204ENST00000623375 1675 ntTSL 1 (best) BASIC23.64■■□□□ 1.37
LSM1O15116 TSPAN10-203ENST00000574882 1837 ntAPPRIS P2 TSL 1 (best) BASIC23.63■■□□□ 1.37
LSM1O15116 SPOCK3-221ENST00000512648 1456 ntTSL 1 (best) BASIC23.63■■□□□ 1.37
LSM1O15116 IGFBPL1-201ENST00000377694 1093 ntAPPRIS P1 TSL 2 BASIC23.63■■□□□ 1.37
LSM1O15116 KLC1-203ENST00000347839 2271 ntTSL 5 BASIC23.63■■□□□ 1.37
LSM1O15116 NRM-201ENST00000259953 1755 ntAPPRIS P2 TSL 2 BASIC23.63■■□□□ 1.37
LSM1O15116 SSBP4-201ENST00000270061 1768 ntAPPRIS P3 TSL 1 (best) BASIC23.63■■□□□ 1.37
LSM1O15116 KAZN-207ENST00000503743 1475 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
LSM1O15116 LDLRAD3-203ENST00000528989 1879 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
LSM1O15116 MAZ-202ENST00000322945 2532 ntAPPRIS ALT2 TSL 1 (best) BASIC23.62■■□□□ 1.37
LSM1O15116 CMC4-202ENST00000369484 1107 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
LSM1O15116 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
LSM1O15116 HABP4-202ENST00000375251 2304 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
LSM1O15116 TSPOAP1-AS1-205ENST00000580022 2337 ntTSL 2 BASIC23.62■■□□□ 1.37
LSM1O15116 FKBP1A-204ENST00000400137 1622 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
LSM1O15116 MBOAT7-201ENST00000245615 2529 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
LSM1O15116 GDF1-201ENST00000247005 2517 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
LSM1O15116 CERS1-204ENST00000623882 2517 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
LSM1O15116 SLC25A10-202ENST00000350690 1885 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
LSM1O15116 TXNRD2-205ENST00000400525 1874 ntTSL 5 BASIC23.62■■□□□ 1.37
LSM1O15116 CCND3-202ENST00000372988 2133 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
LSM1O15116 MRPL4-201ENST00000253099 1455 ntAPPRIS P2 TSL 1 (best) BASIC23.62■■□□□ 1.37
LSM1O15116 WIPI2-204ENST00000404704 1663 ntTSL 5 BASIC23.61■■□□□ 1.37
LSM1O15116 SLC16A11-202ENST00000447225 1779 ntAPPRIS ALT2 TSL 5 BASIC23.61■■□□□ 1.37
LSM1O15116 DUX4L13-201ENST00000554103 1267 ntBASIC23.61■■□□□ 1.37
LSM1O15116 DUX4L15-201ENST00000611059 1267 ntBASIC23.61■■□□□ 1.37
LSM1O15116 DUX4L23-201ENST00000615195 1269 ntBASIC23.61■■□□□ 1.37
LSM1O15116 DUX4L24-201ENST00000617576 1269 ntBASIC23.61■■□□□ 1.37
LSM1O15116 DUX4L22-201ENST00000618238 1269 ntBASIC23.61■■□□□ 1.37
LSM1O15116 DUX4L20-201ENST00000619712 1269 ntBASIC23.61■■□□□ 1.37
LSM1O15116 DUX4L21-201ENST00000622058 1269 ntBASIC23.61■■□□□ 1.37
LSM1O15116 DUX4L10-201ENST00000622460 1267 ntBASIC23.61■■□□□ 1.37
LSM1O15116 DUX4L25-201ENST00000624915 1269 ntBASIC23.61■■□□□ 1.37
LSM1O15116 CASP9-202ENST00000348549 1621 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
Retrieved 100 of 98,524 protein–RNA pairs in 14.2 ms