Protein–RNA interactions for Protein: A0A0B4J248

TRAV1-1, T-cell receptor alpha variable 1-1 (Fragment), humanhuman

Predictions only

Length 108 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV1-1A0A0B4J248 AC068152.1-207ENST00000573341 647 ntTSL 2 BASIC19.39■□□□□ 0.69
TRAV1-1A0A0B4J248 CTF1-202ENST00000395019 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC19.39■□□□□ 0.69
TRAV1-1A0A0B4J248 VSTM2L-202ENST00000373461 1959 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
TRAV1-1A0A0B4J248 APBA3-201ENST00000316757 2075 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
TRAV1-1A0A0B4J248 SSBP4-201ENST00000270061 1768 ntAPPRIS P3 TSL 1 (best) BASIC19.38■□□□□ 0.69
TRAV1-1A0A0B4J248 DYRK3-203ENST00000367109 2163 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
TRAV1-1A0A0B4J248 AL357033.1-201ENST00000370520 1933 ntTSL 2 BASIC19.38■□□□□ 0.69
TRAV1-1A0A0B4J248 YRDC-201ENST00000373044 1826 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
TRAV1-1A0A0B4J248 GNPTAB-202ENST00000392919 760 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
TRAV1-1A0A0B4J248 NELFB-202ENST00000634710 1887 ntAPPRIS P2 TSL 1 (best) BASIC19.38■□□□□ 0.69
TRAV1-1A0A0B4J248 BIN1-207ENST00000357970 2497 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
TRAV1-1A0A0B4J248 LSR-204ENST00000361790 2210 ntAPPRIS P4 TSL 1 (best) BASIC19.37■□□□□ 0.69
TRAV1-1A0A0B4J248 TBL2-222ENST00000610724 2165 ntTSL 5 BASIC19.37■□□□□ 0.69
TRAV1-1A0A0B4J248 BMP6-201ENST00000283147 2780 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
TRAV1-1A0A0B4J248 IRF2BP1-201ENST00000302165 2564 ntAPPRIS P1 BASIC19.37■□□□□ 0.69
TRAV1-1A0A0B4J248 SIGMAR1-205ENST00000477726 840 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
TRAV1-1A0A0B4J248 THRA-201ENST00000264637 2538 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
TRAV1-1A0A0B4J248 GFOD1-204ENST00000603223 2388 ntTSL 2 BASIC19.37■□□□□ 0.69
TRAV1-1A0A0B4J248 KCNMA1-283ENST00000640523 5425 ntAPPRIS ALT2 TSL 5 BASIC19.37■□□□□ 0.69
TRAV1-1A0A0B4J248 SRPK3-205ENST00000393786 1900 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
TRAV1-1A0A0B4J248 SOX10-201ENST00000360880 2861 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
TRAV1-1A0A0B4J248 SOX10-202ENST00000396884 2879 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
TRAV1-1A0A0B4J248 LINC00543-201ENST00000567234 1845 ntBASIC19.37■□□□□ 0.69
TRAV1-1A0A0B4J248 SETBP1-202ENST00000426838 1785 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
TRAV1-1A0A0B4J248 RASL10A-202ENST00000401450 1720 ntTSL 2 BASIC19.37■□□□□ 0.69
TRAV1-1A0A0B4J248 DACT1-201ENST00000335867 2571 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
TRAV1-1A0A0B4J248 THRA-209ENST00000584985 2421 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
TRAV1-1A0A0B4J248 EPS8L1-205ENST00000586329 2130 ntTSL 5 BASIC19.36■□□□□ 0.69
TRAV1-1A0A0B4J248 TMEM64-201ENST00000418210 4663 ntTSL 2 BASIC19.36■□□□□ 0.69
TRAV1-1A0A0B4J248 BIN1-211ENST00000409400 2143 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
TRAV1-1A0A0B4J248 EMID1-202ENST00000404755 2049 ntTSL 5 BASIC19.35■□□□□ 0.69
TRAV1-1A0A0B4J248 ST3GAL5-268ENST00000640982 2465 ntAPPRIS ALT2 TSL 5 BASIC19.35■□□□□ 0.69
TRAV1-1A0A0B4J248 BSPRY-201ENST00000374183 2339 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
TRAV1-1A0A0B4J248 MEIS3-201ENST00000331559 2104 ntAPPRIS ALT2 TSL 5 BASIC19.34■□□□□ 0.69
TRAV1-1A0A0B4J248 AKT1-203ENST00000407796 2710 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
TRAV1-1A0A0B4J248 CHPT1-201ENST00000229266 1585 ntAPPRIS P2 TSL 1 (best) BASIC19.34■□□□□ 0.69
TRAV1-1A0A0B4J248 ADIPOR1-201ENST00000340990 2177 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
TRAV1-1A0A0B4J248 FUS-202ENST00000380244 1818 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
TRAV1-1A0A0B4J248 FEZ2-203ENST00000379245 2097 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
TRAV1-1A0A0B4J248 FBXO45-201ENST00000311630 5899 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
TRAV1-1A0A0B4J248 ALG1L9P-201ENST00000508969 2165 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
TRAV1-1A0A0B4J248 PRDM13-202ENST00000369215 2429 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
TRAV1-1A0A0B4J248 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC19.33■□□□□ 0.68
TRAV1-1A0A0B4J248 PPP1R26-201ENST00000356818 4932 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
TRAV1-1A0A0B4J248 SLC30A3-201ENST00000233535 2260 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
TRAV1-1A0A0B4J248 NKX2-1-204ENST00000522719 1417 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
TRAV1-1A0A0B4J248 TSPAN10-203ENST00000574882 1837 ntAPPRIS P2 TSL 1 (best) BASIC19.32■□□□□ 0.68
TRAV1-1A0A0B4J248 TTC3-225ENST00000540756 2025 ntTSL 2 BASIC19.32■□□□□ 0.68
TRAV1-1A0A0B4J248 DTNB-211ENST00000407661 2420 ntAPPRIS ALT1 TSL 1 (best) BASIC19.32■□□□□ 0.68
TRAV1-1A0A0B4J248 P3H3-201ENST00000290510 2632 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
TRAV1-1A0A0B4J248 R3HCC1-201ENST00000265806 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
TRAV1-1A0A0B4J248 ATP6V1E2-204ENST00000522587 1559 ntAPPRIS P1 TSL 3 BASIC19.32■□□□□ 0.68
TRAV1-1A0A0B4J248 GALNT12-201ENST00000375011 2735 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
TRAV1-1A0A0B4J248 SNX15-202ENST00000377244 1939 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
TRAV1-1A0A0B4J248 LMTK3-201ENST00000270238 4972 ntAPPRIS P2 TSL 1 (best) BASIC19.31■□□□□ 0.68
TRAV1-1A0A0B4J248 TADA2B-201ENST00000310074 4350 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
TRAV1-1A0A0B4J248 SSU72-201ENST00000291386 1290 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
TRAV1-1A0A0B4J248 MMD-201ENST00000262065 2735 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
TRAV1-1A0A0B4J248 INPP5A-202ENST00000368593 1432 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
TRAV1-1A0A0B4J248 GTF2E2-201ENST00000355904 1762 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
TRAV1-1A0A0B4J248 AC138932.3-201ENST00000567634 1902 ntBASIC19.31■□□□□ 0.68
TRAV1-1A0A0B4J248 EML2-209ENST00000587152 2763 ntAPPRIS ALT2 TSL 2 BASIC19.31■□□□□ 0.68
TRAV1-1A0A0B4J248 KRT72-201ENST00000293745 2015 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
TRAV1-1A0A0B4J248 HAS2-AS1-201ENST00000514180 1656 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
TRAV1-1A0A0B4J248 ARMC6-201ENST00000269932 2412 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
TRAV1-1A0A0B4J248 CIB1-201ENST00000328649 1247 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
TRAV1-1A0A0B4J248 CIB1-202ENST00000612800 1096 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
TRAV1-1A0A0B4J248 PDS5A-202ENST00000503396 2685 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
TRAV1-1A0A0B4J248 FAM43A-201ENST00000329759 2494 ntAPPRIS P1 BASIC19.29■□□□□ 0.68
TRAV1-1A0A0B4J248 AC022211.4-201ENST00000625094 2161 ntBASIC19.29■□□□□ 0.68
TRAV1-1A0A0B4J248 TXNRD2-205ENST00000400525 1874 ntTSL 5 BASIC19.29■□□□□ 0.68
TRAV1-1A0A0B4J248 HADH-203ENST00000505878 1719 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
TRAV1-1A0A0B4J248 C1orf122-204ENST00000468084 1234 ntAPPRIS ALT2 TSL 2 BASIC19.29■□□□□ 0.68
TRAV1-1A0A0B4J248 AC010501.1-201ENST00000606270 1962 ntBASIC19.29■□□□□ 0.68
TRAV1-1A0A0B4J248 LINC01578-209ENST00000557682 2683 ntTSL 2 BASIC19.29■□□□□ 0.68
TRAV1-1A0A0B4J248 BARX1-201ENST00000253968 1533 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
TRAV1-1A0A0B4J248 LHX3-201ENST00000371746 2403 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
TRAV1-1A0A0B4J248 AC142472.1-201ENST00000612013 1741 ntBASIC19.28■□□□□ 0.68
TRAV1-1A0A0B4J248 KLC1-205ENST00000380038 2322 ntTSL 2 BASIC19.28■□□□□ 0.68
TRAV1-1A0A0B4J248 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC19.28■□□□□ 0.68
TRAV1-1A0A0B4J248 NUDT18-202ENST00000613958 1754 ntTSL 2 BASIC19.27■□□□□ 0.68
TRAV1-1A0A0B4J248 CCDC151-202ENST00000586836 1867 ntTSL 2 BASIC19.27■□□□□ 0.68
TRAV1-1A0A0B4J248 BIN1-206ENST00000352848 2209 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
TRAV1-1A0A0B4J248 ATRAID-201ENST00000380171 1240 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
TRAV1-1A0A0B4J248 AC079834.2-201ENST00000609776 1949 ntBASIC19.27■□□□□ 0.67
TRAV1-1A0A0B4J248 WRNIP1-205ENST00000618555 2651 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
TRAV1-1A0A0B4J248 AC068473.5-201ENST00000616428 2072 ntBASIC19.26■□□□□ 0.67
TRAV1-1A0A0B4J248 AP002884.3-203ENST00000419895 1711 ntTSL 2 BASIC19.26■□□□□ 0.67
TRAV1-1A0A0B4J248 CASP9-202ENST00000348549 1621 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
TRAV1-1A0A0B4J248 RIMKLB-205ENST00000535829 2236 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
TRAV1-1A0A0B4J248 DGAT2-201ENST00000228027 2453 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
TRAV1-1A0A0B4J248 NAB1-202ENST00000409581 2360 ntAPPRIS P3 TSL 2 BASIC19.25■□□□□ 0.67
TRAV1-1A0A0B4J248 UNC50-204ENST00000409975 2172 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
TRAV1-1A0A0B4J248 SCTR-201ENST00000019103 1865 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
TRAV1-1A0A0B4J248 ZNF767P-202ENST00000472212 2100 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
TRAV1-1A0A0B4J248 DLG3-203ENST00000374360 5905 ntAPPRIS P2 TSL 1 (best) BASIC19.25■□□□□ 0.67
TRAV1-1A0A0B4J248 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC19.25■□□□□ 0.67
TRAV1-1A0A0B4J248 C2CD4D-201ENST00000454109 1757 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
TRAV1-1A0A0B4J248 ROR1-202ENST00000371080 2305 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
TRAV1-1A0A0B4J248 HORMAD2-201ENST00000336726 2187 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 99.1 ms