Protein–RNA interactions for Protein: Q9H9S3

SEC61A2, Protein transport protein Sec61 subunit alpha isoform 2, humanhuman

Predictions only

Length 476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEC61A2Q9H9S3 TMEM147-202ENST00000392204 935 ntTSL 2 BASIC22.22■■□□□ 1.15
SEC61A2Q9H9S3 HES6-205ENST00000409356 528 ntTSL 2 BASIC22.22■■□□□ 1.15
SEC61A2Q9H9S3 SLC25A6-201ENST00000381401 2062 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
SEC61A2Q9H9S3 BCAP31-201ENST00000345046 1589 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
SEC61A2Q9H9S3 C14orf80-203ENST00000354560 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC22.21■■□□□ 1.15
SEC61A2Q9H9S3 NDEL1-202ENST00000380025 2181 ntTSL 5 BASIC22.21■■□□□ 1.15
SEC61A2Q9H9S3 F8A1-201ENST00000610495 1713 ntAPPRIS P1 BASIC22.21■■□□□ 1.15
SEC61A2Q9H9S3 SETBP1-202ENST00000426838 1785 ntAPPRIS ALT2 TSL 1 (best) BASIC22.21■■□□□ 1.15
SEC61A2Q9H9S3 APLP1-201ENST00000221891 2495 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
SEC61A2Q9H9S3 FBXL8-206ENST00000519917 1460 ntAPPRIS P1 TSL 5 BASIC22.21■■□□□ 1.15
SEC61A2Q9H9S3 TSPAN3-203ENST00000424443 1530 ntTSL 2 BASIC22.21■■□□□ 1.15
SEC61A2Q9H9S3 NPB-202ENST00000573081 2154 ntAPPRIS ALT2 BASIC22.21■■□□□ 1.15
SEC61A2Q9H9S3 CAMKK1-201ENST00000158166 2459 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
SEC61A2Q9H9S3 CHST11-202ENST00000546689 756 ntTSL 2 BASIC22.2■■□□□ 1.14
SEC61A2Q9H9S3 DCUN1D5-201ENST00000260247 1337 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
SEC61A2Q9H9S3 HDGF-201ENST00000357325 2380 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
SEC61A2Q9H9S3 SOX1-201ENST00000330949 2842 ntAPPRIS P1 BASIC22.2■■□□□ 1.14
SEC61A2Q9H9S3 CPTP-201ENST00000343938 2190 ntAPPRIS P1 TSL 2 BASIC22.19■■□□□ 1.14
SEC61A2Q9H9S3 UCK1-204ENST00000372215 2167 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
SEC61A2Q9H9S3 PEX7-203ENST00000541292 945 ntTSL 5 BASIC22.19■■□□□ 1.14
SEC61A2Q9H9S3 TAZ-201ENST00000369776 1596 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
SEC61A2Q9H9S3 ZNF768-201ENST00000380412 2315 ntAPPRIS P2 TSL 1 (best) BASIC22.19■■□□□ 1.14
SEC61A2Q9H9S3 RAB40C-204ENST00000538492 2569 ntAPPRIS P1 TSL 2 BASIC22.19■■□□□ 1.14
SEC61A2Q9H9S3 RAD21-AS1-201ENST00000521487 2010 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
SEC61A2Q9H9S3 AURKAIP1-203ENST00000338370 1072 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
SEC61A2Q9H9S3 C16orf95-205ENST00000567970 1031 ntAPPRIS ALT2 TSL 5 BASIC22.18■■□□□ 1.14
SEC61A2Q9H9S3 RAB3IL1-202ENST00000394836 2284 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
SEC61A2Q9H9S3 U2AF1-203ENST00000398137 1019 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
SEC61A2Q9H9S3 U2AF1L5-212ENST00000639996 1019 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
SEC61A2Q9H9S3 DACT2-202ENST00000366796 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC22.16■■□□□ 1.14
SEC61A2Q9H9S3 BBC3-204ENST00000449228 1827 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
SEC61A2Q9H9S3 FAAP20-202ENST00000378546 729 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
SEC61A2Q9H9S3 MIR639-201ENST00000384974 98 ntBASIC22.16■■□□□ 1.14
SEC61A2Q9H9S3 FRAT2-201ENST00000371019 2213 ntAPPRIS P1 BASIC22.16■■□□□ 1.14
SEC61A2Q9H9S3 TMEM55B-202ENST00000398020 1696 ntAPPRIS ALT1 TSL 1 (best) BASIC22.16■■□□□ 1.14
SEC61A2Q9H9S3 MXRA7-202ENST00000375036 1950 ntAPPRIS ALT2 TSL 2 BASIC22.16■■□□□ 1.14
SEC61A2Q9H9S3 ATP8B2-201ENST00000368487 1523 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
SEC61A2Q9H9S3 CLK2-203ENST00000368361 2166 ntAPPRIS ALT1 TSL 1 (best) BASIC22.15■■□□□ 1.14
SEC61A2Q9H9S3 CTXN1-201ENST00000318978 1274 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
SEC61A2Q9H9S3 METRNL-202ENST00000570778 967 ntTSL 5 BASIC22.15■■□□□ 1.14
SEC61A2Q9H9S3 LYPD6B-203ENST00000409642 1577 ntAPPRIS P3 TSL 1 (best) BASIC22.15■■□□□ 1.14
SEC61A2Q9H9S3 NELFB-202ENST00000634710 1887 ntAPPRIS P2 TSL 1 (best) BASIC22.15■■□□□ 1.14
SEC61A2Q9H9S3 PIK3R2-207ENST00000617130 2187 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
SEC61A2Q9H9S3 C14orf80-205ENST00000392523 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC22.15■■□□□ 1.14
SEC61A2Q9H9S3 C11orf80-204ENST00000525908 2135 ntAPPRIS P3 TSL 2 BASIC22.15■■□□□ 1.14
SEC61A2Q9H9S3 PWWP2B-201ENST00000305233 2651 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.14
SEC61A2Q9H9S3 DTNBP1-212ENST00000622898 1305 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
SEC61A2Q9H9S3 RRNAD1-201ENST00000368216 2254 ntAPPRIS P3 TSL 1 (best) BASIC22.13■■□□□ 1.13
SEC61A2Q9H9S3 C8orf58-202ENST00000409586 2021 ntAPPRIS ALT2 TSL 2 BASIC22.13■■□□□ 1.13
SEC61A2Q9H9S3 ROM1-201ENST00000278833 1878 ntAPPRIS P2 TSL 1 (best) BASIC22.13■■□□□ 1.13
SEC61A2Q9H9S3 FADD-201ENST00000301838 1841 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
SEC61A2Q9H9S3 NTN3-201ENST00000293973 1986 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
SEC61A2Q9H9S3 AC009690.3-201ENST00000569547 1902 ntAPPRIS P1 TSL 2 BASIC22.12■■□□□ 1.13
SEC61A2Q9H9S3 RNF19B-201ENST00000235150 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC22.12■■□□□ 1.13
SEC61A2Q9H9S3 FLJ37453-201ENST00000317122 2473 ntTSL 2 BASIC22.12■■□□□ 1.13
SEC61A2Q9H9S3 NSMCE4A-201ENST00000369017 1224 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
SEC61A2Q9H9S3 RCOR3-202ENST00000367006 2525 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
SEC61A2Q9H9S3 MTMR1-202ENST00000370390 2755 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
SEC61A2Q9H9S3 C11orf80-210ENST00000527634 1666 ntAPPRIS ALT2 TSL 5 BASIC22.11■■□□□ 1.13
SEC61A2Q9H9S3 NAPA-201ENST00000263354 1839 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
SEC61A2Q9H9S3 RP9-201ENST00000297157 1121 ntAPPRIS P2 TSL 1 (best) BASIC22.11■■□□□ 1.13
SEC61A2Q9H9S3 TSPAN4-207ENST00000397411 1025 ntAPPRIS P1 TSL 2 BASIC22.11■■□□□ 1.13
SEC61A2Q9H9S3 NR6A1-203ENST00000416460 1898 ntAPPRIS ALT2 TSL 1 (best) BASIC22.11■■□□□ 1.13
SEC61A2Q9H9S3 ANKRD53-203ENST00000441349 1797 ntTSL 5 BASIC22.1■■□□□ 1.13
SEC61A2Q9H9S3 FAM66E-202ENST00000533615 2087 ntTSL 2 BASIC22.1■■□□□ 1.13
SEC61A2Q9H9S3 SNTB1-202ENST00000517992 2273 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
SEC61A2Q9H9S3 GPR25-201ENST00000304244 1224 ntAPPRIS P1 BASIC22.09■■□□□ 1.13
SEC61A2Q9H9S3 TANGO2-214ENST00000447208 2086 ntTSL 3 BASIC22.09■■□□□ 1.13
SEC61A2Q9H9S3 CCDC136-206ENST00000464832 1720 ntAPPRIS ALT2 TSL 5 BASIC22.09■■□□□ 1.13
SEC61A2Q9H9S3 AL121987.2-201ENST00000418602 1578 ntTSL 2 BASIC22.08■■□□□ 1.13
SEC61A2Q9H9S3 KCNJ4-201ENST00000303592 2065 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
SEC61A2Q9H9S3 PARD6A-201ENST00000219255 1248 ntAPPRIS P3 TSL 1 (best) BASIC22.08■■□□□ 1.13
SEC61A2Q9H9S3 CCKBR-201ENST00000334619 2121 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
SEC61A2Q9H9S3 CYB5R3-201ENST00000352397 2124 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
SEC61A2Q9H9S3 RPS2-210ENST00000530225 765 ntTSL 2 BASIC22.07■■□□□ 1.12
SEC61A2Q9H9S3 AC092902.2-221ENST00000628476 965 ntTSL 5 BASIC22.07■■□□□ 1.12
SEC61A2Q9H9S3 PRR5-ARHGAP8-202ENST00000361473 2013 ntTSL 5 BASIC22.07■■□□□ 1.12
SEC61A2Q9H9S3 MRAP2-201ENST00000257776 2153 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
SEC61A2Q9H9S3 PEA15-201ENST00000360472 2471 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
SEC61A2Q9H9S3 EMID1-202ENST00000404755 2049 ntTSL 5 BASIC22.06■■□□□ 1.12
SEC61A2Q9H9S3 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
SEC61A2Q9H9S3 RPS20-211ENST00000524349 752 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
SEC61A2Q9H9S3 MIR4449-201ENST00000578365 66 ntBASIC22.06■■□□□ 1.12
SEC61A2Q9H9S3 PHF23-205ENST00000571362 1768 ntTSL 2 BASIC22.06■■□□□ 1.12
SEC61A2Q9H9S3 POLR3H-201ENST00000337566 1330 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
SEC61A2Q9H9S3 IGFBPL1-201ENST00000377694 1093 ntAPPRIS P1 TSL 2 BASIC22.05■■□□□ 1.12
SEC61A2Q9H9S3 AC009041.3-201ENST00000564390 879 ntTSL 5 BASIC22.05■■□□□ 1.12
SEC61A2Q9H9S3 PKM-203ENST00000389093 2279 ntTSL 5 BASIC22.05■■□□□ 1.12
SEC61A2Q9H9S3 NKPD1-202ENST00000589776 1950 ntAPPRIS P1 BASIC22.05■■□□□ 1.12
SEC61A2Q9H9S3 KCNMA1-283ENST00000640523 5425 ntAPPRIS ALT2 TSL 5 BASIC22.04■■□□□ 1.12
SEC61A2Q9H9S3 AKAP8L-208ENST00000595465 1933 ntTSL 2 BASIC22.04■■□□□ 1.12
SEC61A2Q9H9S3 RAP2A-201ENST00000245304 5487 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
SEC61A2Q9H9S3 GRPEL2-204ENST00000513661 546 ntTSL 2 BASIC22.04■■□□□ 1.12
SEC61A2Q9H9S3 C16orf72-201ENST00000327827 5953 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
SEC61A2Q9H9S3 GSR-205ENST00000541648 1410 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
SEC61A2Q9H9S3 FAM107B-205ENST00000378467 2374 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
SEC61A2Q9H9S3 UNCX-201ENST00000316333 2048 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
SEC61A2Q9H9S3 RFFL-206ENST00000447669 2030 ntAPPRIS P1 TSL 5 BASIC22.03■■□□□ 1.12
SEC61A2Q9H9S3 NRARP-201ENST00000356628 1770 ntAPPRIS P1 BASIC22.03■■□□□ 1.12
SEC61A2Q9H9S3 LAGE3-201ENST00000357360 949 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
Retrieved 100 of 98,524 protein–RNA pairs in 45.6 ms