Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC24.15■■□□□ 1.46
HNF4AP41235 PIK3R2-207ENST00000617130 2187 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
HNF4AP41235 TMEM55B-202ENST00000398020 1696 ntAPPRIS ALT1 TSL 1 (best) BASIC24.15■■□□□ 1.46
HNF4AP41235 DNAJC21-201ENST00000342382 2309 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.45
HNF4AP41235 RPS2-210ENST00000530225 765 ntTSL 2 BASIC24.14■■□□□ 1.45
HNF4AP41235 SNTB1-202ENST00000517992 2273 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.45
HNF4AP41235 AC009690.3-201ENST00000569547 1902 ntAPPRIS P1 TSL 2 BASIC24.14■■□□□ 1.45
HNF4AP41235 C11orf80-204ENST00000525908 2135 ntAPPRIS P3 TSL 2 BASIC24.13■■□□□ 1.45
HNF4AP41235 AGPS-202ENST00000409888 815 ntTSL 4 BASIC24.13■■□□□ 1.45
HNF4AP41235 MIR3648-2-201ENST00000581792 180 ntBASIC24.13■■□□□ 1.45
HNF4AP41235 MIR3648-1-201ENST00000615959 180 ntBASIC24.13■■□□□ 1.45
HNF4AP41235 CCDC136-206ENST00000464832 1720 ntAPPRIS ALT2 TSL 5 BASIC24.13■■□□□ 1.45
HNF4AP41235 FRAT2-201ENST00000371019 2213 ntAPPRIS P1 BASIC24.12■■□□□ 1.45
HNF4AP41235 CAMKK1-201ENST00000158166 2459 ntTSL 1 (best) BASIC24.12■■□□□ 1.45
HNF4AP41235 CTXN1-201ENST00000318978 1274 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
HNF4AP41235 CYB5R3-201ENST00000352397 2124 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
HNF4AP41235 AC016575.1-201ENST00000607026 382 ntBASIC24.12■■□□□ 1.45
HNF4AP41235 APLP1-201ENST00000221891 2495 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
HNF4AP41235 CLK2-203ENST00000368361 2166 ntAPPRIS ALT1 TSL 1 (best) BASIC24.12■■□□□ 1.45
HNF4AP41235 KCNJ4-201ENST00000303592 2065 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.45
HNF4AP41235 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC24.1■■□□□ 1.45
HNF4AP41235 GADD45G-201ENST00000252506 1065 ntAPPRIS P1 TSL 1 (best) BASIC24.1■■□□□ 1.45
HNF4AP41235 TSPAN4-207ENST00000397411 1025 ntAPPRIS P1 TSL 2 BASIC24.1■■□□□ 1.45
HNF4AP41235 MRAP2-201ENST00000257776 2153 ntAPPRIS P1 TSL 1 (best) BASIC24.1■■□□□ 1.45
HNF4AP41235 ATP8B2-201ENST00000368487 1523 ntTSL 1 (best) BASIC24.09■■□□□ 1.45
HNF4AP41235 DLG3-203ENST00000374360 5905 ntAPPRIS P2 TSL 1 (best) BASIC24.09■■□□□ 1.45
HNF4AP41235 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC24.08■■□□□ 1.45
HNF4AP41235 TANGO2-214ENST00000447208 2086 ntTSL 3 BASIC24.08■■□□□ 1.45
HNF4AP41235 MACF1-219ENST00000484793 834 ntTSL 2 BASIC24.08■■□□□ 1.45
HNF4AP41235 PRR5-ARHGAP8-202ENST00000361473 2013 ntTSL 5 BASIC24.08■■□□□ 1.44
HNF4AP41235 CDPF1-201ENST00000314567 1875 ntAPPRIS P2 TSL 1 (best) BASIC24.07■■□□□ 1.44
HNF4AP41235 AURKAIP1-203ENST00000338370 1072 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.44
HNF4AP41235 GSR-205ENST00000541648 1410 ntTSL 1 (best) BASIC24.07■■□□□ 1.44
HNF4AP41235 CAPNS1-215ENST00000628018 1509 ntAPPRIS ALT2 TSL 5 BASIC24.06■■□□□ 1.44
HNF4AP41235 NKPD1-202ENST00000589776 1950 ntAPPRIS P1 BASIC24.06■■□□□ 1.44
HNF4AP41235 AL121987.2-201ENST00000418602 1578 ntTSL 2 BASIC24.06■■□□□ 1.44
HNF4AP41235 ZDHHC16-204ENST00000370842 1877 ntAPPRIS ALT1 TSL 5 BASIC24.06■■□□□ 1.44
HNF4AP41235 EMID1-202ENST00000404755 2049 ntTSL 5 BASIC24.06■■□□□ 1.44
HNF4AP41235 AKAP8L-208ENST00000595465 1933 ntTSL 2 BASIC24.06■■□□□ 1.44
HNF4AP41235 FAM66E-202ENST00000533615 2087 ntTSL 2 BASIC24.06■■□□□ 1.44
HNF4AP41235 RAB40C-204ENST00000538492 2569 ntAPPRIS P1 TSL 2 BASIC24.05■■□□□ 1.44
HNF4AP41235 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC24.05■■□□□ 1.44
HNF4AP41235 TMEM266-201ENST00000388942 2520 ntAPPRIS P1 TSL 5 BASIC24.05■■□□□ 1.44
HNF4AP41235 IGFBPL1-201ENST00000377694 1093 ntAPPRIS P1 TSL 2 BASIC24.04■■□□□ 1.44
HNF4AP41235 RUNDC3A-201ENST00000225441 1821 ntTSL 1 (best) BASIC24.04■■□□□ 1.44
HNF4AP41235 MEN1-204ENST00000377313 1871 ntAPPRIS P3 TSL 2 BASIC24.04■■□□□ 1.44
HNF4AP41235 NRARP-201ENST00000356628 1770 ntAPPRIS P1 BASIC24.03■■□□□ 1.44
HNF4AP41235 CCKBR-201ENST00000334619 2121 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
HNF4AP41235 AC008813.1-201ENST00000536597 885 ntBASIC24.03■■□□□ 1.44
HNF4AP41235 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC24.03■■□□□ 1.44
HNF4AP41235 HDGF-201ENST00000357325 2380 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
HNF4AP41235 UNCX-201ENST00000316333 2048 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
HNF4AP41235 LAGE3-201ENST00000357360 949 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
HNF4AP41235 FAAP20-202ENST00000378546 729 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
HNF4AP41235 RHBDD2-202ENST00000318622 1878 ntTSL 2 BASIC24.02■■□□□ 1.44
HNF4AP41235 FLJ37453-201ENST00000317122 2473 ntTSL 2 BASIC24.02■■□□□ 1.44
HNF4AP41235 TIGD3-201ENST00000309880 2012 ntAPPRIS P1 TSL 2 BASIC24.01■■□□□ 1.43
HNF4AP41235 FAM107B-205ENST00000378467 2374 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
HNF4AP41235 RPS2-202ENST00000526522 924 ntTSL 2 BASIC24.01■■□□□ 1.43
HNF4AP41235 METRNL-202ENST00000570778 967 ntTSL 5 BASIC24.01■■□□□ 1.43
HNF4AP41235 AC092902.2-221ENST00000628476 965 ntTSL 5 BASIC24.01■■□□□ 1.43
HNF4AP41235 SAE1-209ENST00000598840 1831 ntTSL 5 BASIC24■■□□□ 1.43
HNF4AP41235 TAZ-213ENST00000601016 1889 ntTSL 1 (best) BASIC24■■□□□ 1.43
HNF4AP41235 SURF1-201ENST00000371974 1093 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
HNF4AP41235 SURF1-205ENST00000615505 991 ntTSL 1 (best) BASIC24■■□□□ 1.43
HNF4AP41235 VSIG8-201ENST00000368100 1818 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
HNF4AP41235 BCAP31-207ENST00000458587 1810 ntTSL 1 (best) BASIC23.99■■□□□ 1.43
HNF4AP41235 RCOR3-202ENST00000367006 2525 ntTSL 1 (best) BASIC23.99■■□□□ 1.43
HNF4AP41235 POLR3H-201ENST00000337566 1330 ntTSL 1 (best) BASIC23.99■■□□□ 1.43
HNF4AP41235 G6PC3-201ENST00000269097 1533 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
HNF4AP41235 KANSL2-215ENST00000553086 1830 ntTSL 5 BASIC23.98■■□□□ 1.43
HNF4AP41235 FAM220A-201ENST00000313324 2214 ntTSL 1 (best) BASIC23.98■■□□□ 1.43
HNF4AP41235 HLA-V-202ENST00000446817 847 ntBASIC23.98■■□□□ 1.43
HNF4AP41235 SPATA33-209ENST00000579310 1490 ntAPPRIS ALT2 TSL 2 BASIC23.98■■□□□ 1.43
HNF4AP41235 PEA15-201ENST00000360472 2471 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
HNF4AP41235 RP9-201ENST00000297157 1121 ntAPPRIS P2 TSL 1 (best) BASIC23.97■■□□□ 1.43
HNF4AP41235 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC23.97■■□□□ 1.43
HNF4AP41235 C16orf95-205ENST00000567970 1031 ntAPPRIS ALT2 TSL 5 BASIC23.97■■□□□ 1.43
HNF4AP41235 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC23.97■■□□□ 1.43
HNF4AP41235 AL449106.1-201ENST00000608517 1980 ntBASIC23.96■■□□□ 1.43
HNF4AP41235 MBP-237ENST00000579129 1052 ntTSL 5 BASIC23.96■■□□□ 1.43
HNF4AP41235 PKM-203ENST00000389093 2279 ntTSL 5 BASIC23.96■■□□□ 1.43
HNF4AP41235 IRAK1-205ENST00000429936 2127 ntTSL 5 BASIC23.96■■□□□ 1.43
HNF4AP41235 C9orf50-201ENST00000372478 1620 ntAPPRIS P2 TSL 2 BASIC23.95■■□□□ 1.43
HNF4AP41235 WHAMMP3-201ENST00000611636 1609 ntBASIC23.95■■□□□ 1.43
HNF4AP41235 ZDHHC16-207ENST00000393760 2014 ntAPPRIS P4 TSL 1 (best) BASIC23.95■■□□□ 1.42
HNF4AP41235 RFFL-206ENST00000447669 2030 ntAPPRIS P1 TSL 5 BASIC23.95■■□□□ 1.42
HNF4AP41235 CHSY1-201ENST00000254190 4550 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
HNF4AP41235 PARD6A-201ENST00000219255 1248 ntAPPRIS P3 TSL 1 (best) BASIC23.95■■□□□ 1.42
HNF4AP41235 RPS20-211ENST00000524349 752 ntTSL 1 (best) BASIC23.95■■□□□ 1.42
HNF4AP41235 ZNF653-201ENST00000293771 2240 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
HNF4AP41235 NXPH3-201ENST00000328741 2179 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
HNF4AP41235 RNF175-201ENST00000347063 1604 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
HNF4AP41235 LACTBL1-202ENST00000618559 1500 ntAPPRIS ALT2 TSL 5 BASIC23.94■■□□□ 1.42
HNF4AP41235 DTNBP1-212ENST00000622898 1305 ntTSL 1 (best) BASIC23.94■■□□□ 1.42
HNF4AP41235 SLC9A3R2-201ENST00000424542 2194 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
HNF4AP41235 PKDCC-201ENST00000294964 2502 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
HNF4AP41235 DNMT3A-206ENST00000406659 1775 ntTSL 1 (best) BASIC23.93■■□□□ 1.42
HNF4AP41235 RPUSD1-207ENST00000565809 1918 ntTSL 2 BASIC23.93■■□□□ 1.42
HNF4AP41235 CLTA-207ENST00000470744 1102 ntTSL 2 BASIC23.93■■□□□ 1.42
Retrieved 100 of 98,524 protein–RNA pairs in 35.7 ms