Protein–RNA interactions for Protein: O15116

LSM1, U6 snRNA-associated Sm-like protein LSm1, humanhuman

Known RBP Predictions only

Length 133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1O15116 PEX7-203ENST00000541292 945 ntTSL 5 BASIC23.99■■□□□ 1.43
LSM1O15116 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC23.99■■□□□ 1.43
LSM1O15116 BCL7C-202ENST00000380317 2409 ntTSL 1 (best) BASIC23.99■■□□□ 1.43
LSM1O15116 OTUD5-203ENST00000396743 2682 ntAPPRIS ALT1 TSL 1 (best) BASIC23.98■■□□□ 1.43
LSM1O15116 CAPNS1-217ENST00000629983 799 ntTSL 5 BASIC23.98■■□□□ 1.43
LSM1O15116 AC091060.1-201ENST00000623524 1766 ntBASIC23.98■■□□□ 1.43
LSM1O15116 AL449106.1-201ENST00000608517 1980 ntBASIC23.98■■□□□ 1.43
LSM1O15116 GATA4-209ENST00000622443 1982 ntTSL 5 BASIC23.98■■□□□ 1.43
LSM1O15116 BOD1-201ENST00000285908 1286 ntTSL 1 (best) BASIC23.97■■□□□ 1.43
LSM1O15116 PLEKHJ1-201ENST00000326631 1206 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
LSM1O15116 RFFL-206ENST00000447669 2030 ntAPPRIS P1 TSL 5 BASIC23.97■■□□□ 1.43
LSM1O15116 BOD1-206ENST00000480951 814 ntTSL 2 BASIC23.97■■□□□ 1.43
LSM1O15116 GNPTAB-201ENST00000299314 5701 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
LSM1O15116 CNNM2-201ENST00000369875 2059 ntTSL 1 (best) BASIC23.96■■□□□ 1.43
LSM1O15116 DCDC2C-201ENST00000399143 1476 ntAPPRIS P1 TSL 5 BASIC23.96■■□□□ 1.43
LSM1O15116 TXNL4A-208ENST00000588162 752 ntTSL 2 BASIC23.96■■□□□ 1.43
LSM1O15116 ARHGEF7-206ENST00000375741 5525 ntTSL 1 (best) BASIC23.95■■□□□ 1.43
LSM1O15116 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC23.95■■□□□ 1.42
LSM1O15116 AC021231.2-201ENST00000594613 730 ntBASIC23.95■■□□□ 1.42
LSM1O15116 C19orf47-202ENST00000392035 2126 ntAPPRIS ALT2 TSL 1 (best) BASIC23.94■■□□□ 1.42
LSM1O15116 PRR5-ARHGAP8-202ENST00000361473 2013 ntTSL 5 BASIC23.94■■□□□ 1.42
LSM1O15116 HOMER3-202ENST00000392351 1557 ntAPPRIS P3 TSL 1 (best) BASIC23.94■■□□□ 1.42
LSM1O15116 CSNK1E-203ENST00000396832 2791 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
LSM1O15116 HINT2-201ENST00000259667 628 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
LSM1O15116 GPR25-201ENST00000304244 1224 ntAPPRIS P1 BASIC23.93■■□□□ 1.42
LSM1O15116 TAZ-201ENST00000369776 1596 ntTSL 1 (best) BASIC23.93■■□□□ 1.42
LSM1O15116 ZDHHC16-201ENST00000345745 1519 ntTSL 1 (best) BASIC23.93■■□□□ 1.42
LSM1O15116 TAZ-205ENST00000475699 1862 ntTSL 1 (best) BASIC23.92■■□□□ 1.42
LSM1O15116 CDC16-211ENST00000628084 2058 ntTSL 5 BASIC23.92■■□□□ 1.42
LSM1O15116 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC23.92■■□□□ 1.42
LSM1O15116 CCDC149-203ENST00000502801 1079 ntTSL 1 (best) BASIC23.92■■□□□ 1.42
LSM1O15116 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC23.92■■□□□ 1.42
LSM1O15116 RNF175-201ENST00000347063 1604 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
LSM1O15116 EBF4-210ENST00000609451 2012 ntAPPRIS ALT1 TSL 5 BASIC23.91■■□□□ 1.42
LSM1O15116 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC23.91■■□□□ 1.42
LSM1O15116 ANKS3-203ENST00000450067 2272 ntTSL 5 BASIC23.91■■□□□ 1.42
LSM1O15116 GPR150-201ENST00000380007 2065 ntAPPRIS P1 BASIC23.89■■□□□ 1.41
LSM1O15116 AC009097.4-201ENST00000566738 777 ntTSL 2 BASIC23.89■■□□□ 1.41
LSM1O15116 AP004609.3-201ENST00000610705 1884 ntBASIC23.89■■□□□ 1.41
LSM1O15116 P2RY2-202ENST00000393596 2174 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.41
LSM1O15116 SAE1-209ENST00000598840 1831 ntTSL 5 BASIC23.89■■□□□ 1.41
LSM1O15116 CAPN10-204ENST00000354082 1999 ntTSL 1 (best) BASIC23.89■■□□□ 1.41
LSM1O15116 DUX4L29-201ENST00000425409 679 ntBASIC23.88■■□□□ 1.41
LSM1O15116 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC23.87■■□□□ 1.41
LSM1O15116 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC23.87■■□□□ 1.41
LSM1O15116 TCAM1P-201ENST00000463377 452 ntTSL 3 BASIC23.87■■□□□ 1.41
LSM1O15116 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC23.87■■□□□ 1.41
LSM1O15116 PTPA-202ENST00000347048 1989 ntTSL 1 (best) BASIC23.87■■□□□ 1.41
LSM1O15116 AL121987.2-201ENST00000418602 1578 ntTSL 2 BASIC23.86■■□□□ 1.41
LSM1O15116 REXO4-202ENST00000371942 2360 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
LSM1O15116 U2AF1-203ENST00000398137 1019 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
LSM1O15116 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC23.86■■□□□ 1.41
LSM1O15116 U2AF1L5-212ENST00000639996 1019 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
LSM1O15116 ARHGEF7-205ENST00000375739 5375 ntTSL 1 (best) BASIC23.85■■□□□ 1.41
LSM1O15116 ANKRD53-201ENST00000272421 2185 ntAPPRIS P3 TSL 1 (best) BASIC23.85■■□□□ 1.41
LSM1O15116 FEZ2-204ENST00000405912 1931 ntTSL 1 (best) BASIC23.85■■□□□ 1.41
LSM1O15116 AC145676.1-201ENST00000514988 2004 ntBASIC23.85■■□□□ 1.41
LSM1O15116 NSMCE4A-201ENST00000369017 1224 ntTSL 1 (best) BASIC23.85■■□□□ 1.41
LSM1O15116 ACSS1-202ENST00000376726 2244 ntTSL 2 BASIC23.85■■□□□ 1.41
LSM1O15116 ALG2-203ENST00000476832 1880 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
LSM1O15116 FOXG1-201ENST00000313071 4890 ntAPPRIS P1 BASIC23.85■■□□□ 1.41
LSM1O15116 PPM1B-202ENST00000345249 1713 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
LSM1O15116 CRTAP-202ENST00000449224 1811 ntAPPRIS ALT2 TSL 2 BASIC23.84■■□□□ 1.41
LSM1O15116 BAMBI-201ENST00000375533 1877 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
LSM1O15116 NME2-202ENST00000393190 866 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
LSM1O15116 SNTA1-201ENST00000217381 2342 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
LSM1O15116 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC23.83■■□□□ 1.41
LSM1O15116 POU2F2-208ENST00000529952 1716 ntAPPRIS ALT2 TSL 1 (best) BASIC23.83■■□□□ 1.41
LSM1O15116 DLX2-202ENST00000466293 1852 ntTSL 2 BASIC23.83■■□□□ 1.4
LSM1O15116 ACSS1-203ENST00000432802 2438 ntTSL 2 BASIC23.82■■□□□ 1.4
LSM1O15116 TMEM147-202ENST00000392204 935 ntTSL 2 BASIC23.82■■□□□ 1.4
LSM1O15116 PPP1R35-201ENST00000292330 1031 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
LSM1O15116 TTBK2-207ENST00000567840 1961 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
LSM1O15116 WHAMMP3-201ENST00000611636 1609 ntBASIC23.81■■□□□ 1.4
LSM1O15116 TTC3-225ENST00000540756 2025 ntTSL 2 BASIC23.8■■□□□ 1.4
LSM1O15116 TMEM55B-202ENST00000398020 1696 ntAPPRIS ALT1 TSL 1 (best) BASIC23.79■■□□□ 1.4
LSM1O15116 ZFPM1-201ENST00000319555 5380 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
LSM1O15116 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC23.79■■□□□ 1.4
LSM1O15116 GSR-205ENST00000541648 1410 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
LSM1O15116 FUS-202ENST00000380244 1818 ntAPPRIS ALT2 TSL 1 (best) BASIC23.79■■□□□ 1.4
LSM1O15116 CLPTM1L-201ENST00000320895 2500 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
LSM1O15116 TSPAN3-203ENST00000424443 1530 ntTSL 2 BASIC23.79■■□□□ 1.4
LSM1O15116 SLC35A2-207ENST00000445167 1739 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
LSM1O15116 AC142472.1-201ENST00000612013 1741 ntBASIC23.79■■□□□ 1.4
LSM1O15116 RAPGEF1-203ENST00000372195 6256 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
LSM1O15116 SLC15A3-201ENST00000227880 2115 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
LSM1O15116 GSC-201ENST00000238558 1264 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
LSM1O15116 SLC35D2-202ENST00000375257 889 ntTSL 2 BASIC23.78■■□□□ 1.4
LSM1O15116 RPS2-210ENST00000530225 765 ntTSL 2 BASIC23.78■■□□□ 1.4
LSM1O15116 AC092803.2-201ENST00000564287 1899 ntBASIC23.77■■□□□ 1.4
LSM1O15116 LMTK3-201ENST00000270238 4972 ntAPPRIS P2 TSL 1 (best) BASIC23.77■■□□□ 1.39
LSM1O15116 ST6GALNAC6-204ENST00000373144 2406 ntAPPRIS ALT1 TSL 1 (best) BASIC23.76■■□□□ 1.39
LSM1O15116 CTF1-202ENST00000395019 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC23.76■■□□□ 1.39
LSM1O15116 TP53I3-201ENST00000238721 1998 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
LSM1O15116 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
LSM1O15116 LYPLA1-215ENST00000618914 2482 ntTSL 5 BASIC23.75■■□□□ 1.39
LSM1O15116 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC23.75■■□□□ 1.39
LSM1O15116 BICDL2-203ENST00000572449 1984 ntAPPRIS P1 TSL 5 BASIC23.74■■□□□ 1.39
LSM1O15116 ARPC2-201ENST00000295685 1605 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
LSM1O15116 DUSP8P4-201ENST00000399538 1761 ntBASIC23.74■■□□□ 1.39
Retrieved 100 of 98,524 protein–RNA pairs in 15.6 ms