Protein–RNA interactions for Protein: O00151

PDLIM1, PDZ and LIM domain protein 1, humanhuman

Predictions only

Length 329 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM1O00151 CDK9-201ENST00000373264 2463 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
PDLIM1O00151 SPIRE1-203ENST00000410092 5533 ntAPPRIS P3 TSL 1 (best) BASIC23.57■■□□□ 1.36
PDLIM1O00151 TMEM185A-208ENST00000611119 2662 ntTSL 2 BASIC23.56■■□□□ 1.36
PDLIM1O00151 VEGFA-231ENST00000640499 1188 ntAPPRIS P3 TSL 1 (best) BASIC23.56■■□□□ 1.36
PDLIM1O00151 RCC1L-205ENST00000618035 1409 ntTSL 1 (best) BASIC23.56■■□□□ 1.36
PDLIM1O00151 HSD11B1L-209ENST00000577917 1553 ntTSL 1 (best) BASIC23.56■■□□□ 1.36
PDLIM1O00151 STUB1-201ENST00000219548 1472 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
PDLIM1O00151 MTNR1A-201ENST00000307161 1289 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
PDLIM1O00151 MIR3665-201ENST00000578708 105 ntBASIC23.55■■□□□ 1.36
PDLIM1O00151 AC005559.1-201ENST00000589661 871 ntBASIC23.55■■□□□ 1.36
PDLIM1O00151 DUX4L28-201ENST00000623687 678 ntBASIC23.55■■□□□ 1.36
PDLIM1O00151 SOX10-202ENST00000396884 2879 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
PDLIM1O00151 LANCL3-203ENST00000614025 1469 ntTSL 2 BASIC23.55■■□□□ 1.36
PDLIM1O00151 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC23.55■■□□□ 1.36
PDLIM1O00151 ARMC6-201ENST00000269932 2412 ntAPPRIS P1 TSL 5 BASIC23.54■■□□□ 1.36
PDLIM1O00151 NECTIN2-202ENST00000252485 2112 ntAPPRIS P3 TSL 1 (best) BASIC23.54■■□□□ 1.36
PDLIM1O00151 MISP3-202ENST00000587086 1535 ntAPPRIS P2 TSL 1 (best) BASIC23.54■■□□□ 1.36
PDLIM1O00151 DUSP14-206ENST00000617516 1537 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
PDLIM1O00151 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
PDLIM1O00151 PARD6A-202ENST00000458121 1260 ntAPPRIS ALT1 TSL 1 (best) BASIC23.54■■□□□ 1.36
PDLIM1O00151 CYS1-201ENST00000381813 2738 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
PDLIM1O00151 ALG2-203ENST00000476832 1880 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
PDLIM1O00151 NMB-202ENST00000394588 1017 ntTSL 1 (best) BASIC23.53■■□□□ 1.36
PDLIM1O00151 SP5-201ENST00000375281 2033 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
PDLIM1O00151 MAD2L2-201ENST00000235310 1860 ntAPPRIS P1 TSL 2 BASIC23.53■■□□□ 1.36
PDLIM1O00151 CD6-206ENST00000452451 1782 ntAPPRIS ALT2 TSL 1 (best) BASIC23.52■■□□□ 1.36
PDLIM1O00151 GATA4-209ENST00000622443 1982 ntTSL 5 BASIC23.52■■□□□ 1.36
PDLIM1O00151 AC145676.1-201ENST00000514988 2004 ntBASIC23.52■■□□□ 1.36
PDLIM1O00151 C1QTNF8-201ENST00000328449 1627 ntAPPRIS P1 TSL 5 BASIC23.52■■□□□ 1.36
PDLIM1O00151 PICALM-202ENST00000393346 2340 ntAPPRIS P3 TSL 1 (best) BASIC23.52■■□□□ 1.36
PDLIM1O00151 DHFR-203ENST00000505337 1719 ntAPPRIS P1 TSL 2 BASIC23.52■■□□□ 1.36
PDLIM1O00151 NRARP-201ENST00000356628 1770 ntAPPRIS P1 BASIC23.52■■□□□ 1.36
PDLIM1O00151 LDLRAD4-218ENST00000592991 1640 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
PDLIM1O00151 FLT1-202ENST00000539099 1911 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
PDLIM1O00151 PPM1B-202ENST00000345249 1713 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
PDLIM1O00151 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC23.5■■□□□ 1.35
PDLIM1O00151 RPS2P35-201ENST00000443417 897 ntBASIC23.5■■□□□ 1.35
PDLIM1O00151 TBC1D10A-201ENST00000215790 2077 ntAPPRIS P3 TSL 1 (best) BASIC23.5■■□□□ 1.35
PDLIM1O00151 NAGS-201ENST00000293404 2182 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
PDLIM1O00151 CDPF1-201ENST00000314567 1875 ntAPPRIS P2 TSL 1 (best) BASIC23.49■■□□□ 1.35
PDLIM1O00151 HABP4-202ENST00000375251 2304 ntTSL 1 (best) BASIC23.49■■□□□ 1.35
PDLIM1O00151 RNF19B-203ENST00000373456 2560 ntAPPRIS P3 TSL 1 (best) BASIC23.49■■□□□ 1.35
PDLIM1O00151 ST6GALNAC2-201ENST00000225276 2170 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
PDLIM1O00151 UBAC1-201ENST00000371756 1867 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
PDLIM1O00151 LYPLA1-215ENST00000618914 2482 ntTSL 5 BASIC23.49■■□□□ 1.35
PDLIM1O00151 C14orf80-205ENST00000392523 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC23.48■■□□□ 1.35
PDLIM1O00151 DACT1-201ENST00000335867 2571 ntAPPRIS P3 TSL 1 (best) BASIC23.48■■□□□ 1.35
PDLIM1O00151 PIM3-201ENST00000360612 2369 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
PDLIM1O00151 BATF3-201ENST00000243440 980 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
PDLIM1O00151 EBAG9-202ENST00000395785 1467 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
PDLIM1O00151 TSEN34-203ENST00000396388 1349 ntAPPRIS P1 TSL 1 (best) BASIC23.46■■□□□ 1.35
PDLIM1O00151 ADAM22-209ENST00000439864 2576 ntTSL 1 (best) BASIC23.46■■□□□ 1.35
PDLIM1O00151 ITPKA-201ENST00000260386 1824 ntAPPRIS P1 TSL 1 (best) BASIC23.45■■□□□ 1.34
PDLIM1O00151 NFKBIE-201ENST00000275015 2581 ntTSL 1 (best) BASIC23.45■■□□□ 1.34
PDLIM1O00151 AL139393.1-201ENST00000417479 573 ntTSL 5 BASIC23.45■■□□□ 1.34
PDLIM1O00151 GTPBP3-203ENST00000361619 1894 ntTSL 2 BASIC23.45■■□□□ 1.34
PDLIM1O00151 SLAIN1-213ENST00000466548 2637 ntAPPRIS ALT2 TSL 5 BASIC23.45■■□□□ 1.34
PDLIM1O00151 DYRK1B-201ENST00000323039 2535 ntAPPRIS P3 TSL 1 (best) BASIC23.44■■□□□ 1.34
PDLIM1O00151 AP002414.2-202ENST00000590929 1450 ntBASIC23.44■■□□□ 1.34
PDLIM1O00151 AC087741.3-201ENST00000624270 1347 ntBASIC23.44■■□□□ 1.34
PDLIM1O00151 DLX2-202ENST00000466293 1852 ntTSL 2 BASIC23.44■■□□□ 1.34
PDLIM1O00151 MNX1-207ENST00000543409 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC23.44■■□□□ 1.34
PDLIM1O00151 PIP5K1C-203ENST00000539785 2289 ntAPPRIS ALT2 TSL 2 BASIC23.43■■□□□ 1.34
PDLIM1O00151 OPN3-201ENST00000366554 2620 ntAPPRIS P1 TSL 1 (best) BASIC23.43■■□□□ 1.34
PDLIM1O00151 CEBPB-AS1-201ENST00000613921 2648 ntTSL 3 BASIC23.43■■□□□ 1.34
PDLIM1O00151 NOXA1-201ENST00000341349 1678 ntAPPRIS P1 TSL 1 (best) BASIC23.43■■□□□ 1.34
PDLIM1O00151 PDS5A-202ENST00000503396 2685 ntTSL 1 (best) BASIC23.43■■□□□ 1.34
PDLIM1O00151 ANKS3-203ENST00000450067 2272 ntTSL 5 BASIC23.43■■□□□ 1.34
PDLIM1O00151 IRF2BP1-201ENST00000302165 2564 ntAPPRIS P1 BASIC23.43■■□□□ 1.34
PDLIM1O00151 HAS1-205ENST00000601714 2086 ntTSL 1 (best) BASIC23.42■■□□□ 1.34
PDLIM1O00151 OSBP-201ENST00000263847 5083 ntAPPRIS P1 TSL 1 (best) BASIC23.42■■□□□ 1.34
PDLIM1O00151 C8orf58-202ENST00000409586 2021 ntAPPRIS ALT2 TSL 2 BASIC23.42■■□□□ 1.34
PDLIM1O00151 EPM2A-209ENST00000638262 2679 ntTSL 1 (best) BASIC23.42■■□□□ 1.34
PDLIM1O00151 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC23.42■■□□□ 1.34
PDLIM1O00151 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC23.42■■□□□ 1.34
PDLIM1O00151 BBC3-204ENST00000449228 1827 ntTSL 1 (best) BASIC23.42■■□□□ 1.34
PDLIM1O00151 SRR-201ENST00000344595 2728 ntAPPRIS P1 TSL 1 (best) BASIC23.42■■□□□ 1.34
PDLIM1O00151 AGAP3-201ENST00000335367 2675 ntTSL 1 (best) BASIC23.42■■□□□ 1.34
PDLIM1O00151 RAD21-AS1-201ENST00000521487 2010 ntTSL 1 (best) BASIC23.42■■□□□ 1.34
PDLIM1O00151 UBE2J2-202ENST00000349431 1733 ntAPPRIS P1 TSL 1 (best) BASIC23.42■■□□□ 1.34
PDLIM1O00151 MAGI2-215ENST00000628980 6212 ntTSL 5 BASIC23.41■■□□□ 1.34
PDLIM1O00151 NAA50-207ENST00000493900 962 ntAPPRIS ALT1 TSL 2 BASIC23.41■■□□□ 1.34
PDLIM1O00151 MEIS2-204ENST00000397620 2295 ntTSL 2 BASIC23.41■■□□□ 1.34
PDLIM1O00151 AZIN2-201ENST00000294517 2182 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.34
PDLIM1O00151 RINL-202ENST00000591812 1910 ntAPPRIS ALT2 TSL 2 BASIC23.4■■□□□ 1.34
PDLIM1O00151 COX4I1-203ENST00000562336 873 ntAPPRIS P1 TSL 5 BASIC23.4■■□□□ 1.34
PDLIM1O00151 COQ2-202ENST00000311469 1641 ntAPPRIS P2 TSL 1 (best) BASIC23.4■■□□□ 1.34
PDLIM1O00151 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC23.4■■□□□ 1.34
PDLIM1O00151 MYPOP-201ENST00000322217 1890 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.34
PDLIM1O00151 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC23.39■■□□□ 1.34
PDLIM1O00151 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.33
PDLIM1O00151 RPS2-209ENST00000529806 993 ntTSL 3 BASIC23.39■■□□□ 1.33
PDLIM1O00151 INPP4A-203ENST00000409463 1565 ntTSL 1 (best) BASIC23.39■■□□□ 1.33
PDLIM1O00151 AC012676.1-201ENST00000574705 1949 ntBASIC23.39■■□□□ 1.33
PDLIM1O00151 BAMBI-201ENST00000375533 1877 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.33
PDLIM1O00151 AC012615.2-201ENST00000586259 447 ntTSL 4 BASIC23.38■■□□□ 1.33
PDLIM1O00151 PMS1-205ENST00000409985 1882 ntTSL 2 BASIC23.38■■□□□ 1.33
PDLIM1O00151 TRIM54-201ENST00000296098 2027 ntTSL 1 (best) BASIC23.38■■□□□ 1.33
PDLIM1O00151 CTBP2-211ENST00000494626 2014 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
PDLIM1O00151 HTR6-201ENST00000289753 1984 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
Retrieved 100 of 98,524 protein–RNA pairs in 113 ms