Protein–RNA interactions for Protein: A6NDI0

TRIM49B, Putative tripartite motif-containing protein 49B, humanhuman

Predictions only

Length 452 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM49BA6NDI0 DHFR-203ENST00000505337 1719 ntAPPRIS P1 TSL 2 BASIC27.53■■■□□ 2
TRIM49BA6NDI0 TMEM55B-202ENST00000398020 1696 ntAPPRIS ALT1 TSL 1 (best) BASIC27.53■■■□□ 2
TRIM49BA6NDI0 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC27.53■■■□□ 2
TRIM49BA6NDI0 CNNM2-201ENST00000369875 2059 ntTSL 1 (best) BASIC27.52■■■□□ 2
TRIM49BA6NDI0 SHF-207ENST00000560540 2062 ntTSL 5 BASIC27.52■■■□□ 2
TRIM49BA6NDI0 TMEM147-202ENST00000392204 935 ntTSL 2 BASIC27.52■■■□□ 2
TRIM49BA6NDI0 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC27.52■■■□□ 2
TRIM49BA6NDI0 LCNL1-201ENST00000408973 1839 ntAPPRIS P1 TSL 2 BASIC27.51■■□□□ 1.99
TRIM49BA6NDI0 BCL7C-202ENST00000380317 2409 ntTSL 1 (best) BASIC27.51■■□□□ 1.99
TRIM49BA6NDI0 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC27.5■■□□□ 1.99
TRIM49BA6NDI0 GPS1-204ENST00000392358 2276 ntTSL 1 (best) BASIC27.5■■□□□ 1.99
TRIM49BA6NDI0 ANKS3-203ENST00000450067 2272 ntTSL 5 BASIC27.5■■□□□ 1.99
TRIM49BA6NDI0 RHBDD2-202ENST00000318622 1878 ntTSL 2 BASIC27.49■■□□□ 1.99
TRIM49BA6NDI0 SAE1-209ENST00000598840 1831 ntTSL 5 BASIC27.49■■□□□ 1.99
TRIM49BA6NDI0 LZTS2-201ENST00000370220 5741 ntAPPRIS P1 TSL 1 (best) BASIC27.49■■□□□ 1.99
TRIM49BA6NDI0 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC27.48■■□□□ 1.99
TRIM49BA6NDI0 RASSF5-204ENST00000580449 1932 ntTSL 1 (best) BASIC27.48■■□□□ 1.99
TRIM49BA6NDI0 CHML-204ENST00000638121 920 ntTSL 2 BASIC27.48■■□□□ 1.99
TRIM49BA6NDI0 ZNF692-201ENST00000306601 1931 ntAPPRIS P3 TSL 1 (best) BASIC27.47■■□□□ 1.99
TRIM49BA6NDI0 GPR25-201ENST00000304244 1224 ntAPPRIS P1 BASIC27.47■■□□□ 1.99
TRIM49BA6NDI0 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC27.47■■□□□ 1.99
TRIM49BA6NDI0 OXSR1-203ENST00000446845 1908 ntTSL 5 BASIC27.47■■□□□ 1.99
TRIM49BA6NDI0 TSPAN3-203ENST00000424443 1530 ntTSL 2 BASIC27.46■■□□□ 1.99
TRIM49BA6NDI0 LINC01971-201ENST00000617888 1048 ntBASIC27.46■■□□□ 1.99
TRIM49BA6NDI0 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC27.46■■□□□ 1.99
TRIM49BA6NDI0 DEDD-212ENST00000545495 2329 ntAPPRIS P1 TSL 3 BASIC27.46■■□□□ 1.99
TRIM49BA6NDI0 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC27.45■■□□□ 1.98
TRIM49BA6NDI0 NXPH4-201ENST00000349394 1804 ntAPPRIS P1 TSL 1 (best) BASIC27.45■■□□□ 1.98
TRIM49BA6NDI0 C19orf47-202ENST00000392035 2126 ntAPPRIS ALT2 TSL 1 (best) BASIC27.44■■□□□ 1.98
TRIM49BA6NDI0 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC27.44■■□□□ 1.98
TRIM49BA6NDI0 TMEM185A-207ENST00000600449 2840 ntAPPRIS P1 TSL 1 (best) BASIC27.44■■□□□ 1.98
TRIM49BA6NDI0 CFAP99-207ENST00000635017 2298 ntTSL 5 BASIC27.43■■□□□ 1.98
TRIM49BA6NDI0 DNAJB2-202ENST00000392086 1946 ntAPPRIS P1 TSL 2 BASIC27.43■■□□□ 1.98
TRIM49BA6NDI0 PRKAR1B-203ENST00000403562 1917 ntAPPRIS P1 TSL 1 (best) BASIC27.43■■□□□ 1.98
TRIM49BA6NDI0 RNF175-201ENST00000347063 1604 ntAPPRIS P1 TSL 1 (best) BASIC27.42■■□□□ 1.98
TRIM49BA6NDI0 BHLHE23-201ENST00000370346 1057 ntAPPRIS P1 BASIC27.42■■□□□ 1.98
TRIM49BA6NDI0 RPS2-210ENST00000530225 765 ntTSL 2 BASIC27.42■■□□□ 1.98
TRIM49BA6NDI0 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC27.42■■□□□ 1.98
TRIM49BA6NDI0 AP004609.3-201ENST00000610705 1884 ntBASIC27.42■■□□□ 1.98
TRIM49BA6NDI0 ARPC2-201ENST00000295685 1605 ntAPPRIS P1 TSL 1 (best) BASIC27.41■■□□□ 1.98
TRIM49BA6NDI0 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC27.41■■□□□ 1.98
TRIM49BA6NDI0 TMEM266-201ENST00000388942 2520 ntAPPRIS P1 TSL 5 BASIC27.41■■□□□ 1.98
TRIM49BA6NDI0 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC27.41■■□□□ 1.98
TRIM49BA6NDI0 GSR-205ENST00000541648 1410 ntTSL 1 (best) BASIC27.41■■□□□ 1.98
TRIM49BA6NDI0 G6PC3-201ENST00000269097 1533 ntAPPRIS P1 TSL 1 (best) BASIC27.4■■□□□ 1.98
TRIM49BA6NDI0 CRTAP-202ENST00000449224 1811 ntAPPRIS ALT2 TSL 2 BASIC27.39■■□□□ 1.98
TRIM49BA6NDI0 CDC16-211ENST00000628084 2058 ntTSL 5 BASIC27.39■■□□□ 1.98
TRIM49BA6NDI0 GATA4-209ENST00000622443 1982 ntTSL 5 BASIC27.39■■□□□ 1.98
TRIM49BA6NDI0 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC27.39■■□□□ 1.98
TRIM49BA6NDI0 AC091060.1-201ENST00000623524 1766 ntBASIC27.39■■□□□ 1.98
TRIM49BA6NDI0 TTC3-225ENST00000540756 2025 ntTSL 2 BASIC27.39■■□□□ 1.98
TRIM49BA6NDI0 ABL1-201ENST00000318560 5766 ntTSL 1 (best) BASIC27.39■■□□□ 1.97
TRIM49BA6NDI0 TLE6-201ENST00000246112 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC27.38■■□□□ 1.97
TRIM49BA6NDI0 RHOQ-201ENST00000238738 2975 ntAPPRIS P1 TSL 1 (best) BASIC27.38■■□□□ 1.97
TRIM49BA6NDI0 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC27.38■■□□□ 1.97
TRIM49BA6NDI0 DUX4L13-201ENST00000554103 1267 ntBASIC27.38■■□□□ 1.97
TRIM49BA6NDI0 DUX4L15-201ENST00000611059 1267 ntBASIC27.38■■□□□ 1.97
TRIM49BA6NDI0 DUX4L23-201ENST00000615195 1269 ntBASIC27.38■■□□□ 1.97
TRIM49BA6NDI0 DUX4L24-201ENST00000617576 1269 ntBASIC27.38■■□□□ 1.97
TRIM49BA6NDI0 DUX4L22-201ENST00000618238 1269 ntBASIC27.38■■□□□ 1.97
TRIM49BA6NDI0 DUX4L20-201ENST00000619712 1269 ntBASIC27.38■■□□□ 1.97
TRIM49BA6NDI0 DUX4L21-201ENST00000622058 1269 ntBASIC27.38■■□□□ 1.97
TRIM49BA6NDI0 DUX4L10-201ENST00000622460 1267 ntBASIC27.38■■□□□ 1.97
TRIM49BA6NDI0 DUX4L25-201ENST00000624915 1269 ntBASIC27.38■■□□□ 1.97
TRIM49BA6NDI0 CLPTM1L-201ENST00000320895 2500 ntAPPRIS P1 TSL 1 (best) BASIC27.38■■□□□ 1.97
TRIM49BA6NDI0 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC27.38■■□□□ 1.97
TRIM49BA6NDI0 SPATA33-209ENST00000579310 1490 ntAPPRIS ALT2 TSL 2 BASIC27.38■■□□□ 1.97
TRIM49BA6NDI0 ACSS1-203ENST00000432802 2438 ntTSL 2 BASIC27.37■■□□□ 1.97
TRIM49BA6NDI0 NSMCE4A-201ENST00000369017 1224 ntTSL 1 (best) BASIC27.37■■□□□ 1.97
TRIM49BA6NDI0 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC27.37■■□□□ 1.97
TRIM49BA6NDI0 ANKRD9-205ENST00000560748 1413 ntAPPRIS P1 TSL 2 BASIC27.37■■□□□ 1.97
TRIM49BA6NDI0 WHAMMP3-201ENST00000611636 1609 ntBASIC27.37■■□□□ 1.97
TRIM49BA6NDI0 DUX4L11-201ENST00000611504 1267 ntBASIC27.36■■□□□ 1.97
TRIM49BA6NDI0 DUX4L12-201ENST00000614593 1267 ntBASIC27.36■■□□□ 1.97
TRIM49BA6NDI0 DUX4L14-201ENST00000621227 1267 ntBASIC27.36■■□□□ 1.97
TRIM49BA6NDI0 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC27.35■■□□□ 1.97
TRIM49BA6NDI0 LYPLA1-215ENST00000618914 2482 ntTSL 5 BASIC27.34■■□□□ 1.97
TRIM49BA6NDI0 IGFBPL1-201ENST00000377694 1093 ntAPPRIS P1 TSL 2 BASIC27.34■■□□□ 1.97
TRIM49BA6NDI0 ZFAND2B-206ENST00000409336 944 ntAPPRIS P1 TSL 5 BASIC27.34■■□□□ 1.97
TRIM49BA6NDI0 ZNRF2P2-203ENST00000454624 420 ntBASIC27.34■■□□□ 1.97
TRIM49BA6NDI0 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC27.34■■□□□ 1.97
TRIM49BA6NDI0 CHST11-202ENST00000546689 756 ntTSL 2 BASIC27.34■■□□□ 1.97
TRIM49BA6NDI0 ZFAND2B-221ENST00000621130 1070 ntTSL 5 BASIC27.34■■□□□ 1.97
TRIM49BA6NDI0 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC27.33■■□□□ 1.97
TRIM49BA6NDI0 MLEC-202ENST00000412616 841 ntTSL 3 BASIC27.33■■□□□ 1.97
TRIM49BA6NDI0 EBF4-210ENST00000609451 2012 ntAPPRIS ALT1 TSL 5 BASIC27.33■■□□□ 1.96
TRIM49BA6NDI0 ABHD12-202ENST00000376542 1725 ntTSL 1 (best) BASIC27.33■■□□□ 1.96
TRIM49BA6NDI0 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC27.32■■□□□ 1.96
TRIM49BA6NDI0 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC27.32■■□□□ 1.96
TRIM49BA6NDI0 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC27.3■■□□□ 1.96
TRIM49BA6NDI0 SOWAHD-201ENST00000343905 1552 ntAPPRIS P1 BASIC27.3■■□□□ 1.96
TRIM49BA6NDI0 ACSS1-202ENST00000376726 2244 ntTSL 2 BASIC27.29■■□□□ 1.96
TRIM49BA6NDI0 SLC35A2-207ENST00000445167 1739 ntTSL 1 (best) BASIC27.29■■□□□ 1.96
TRIM49BA6NDI0 ST7L-206ENST00000369666 1815 ntTSL 1 (best) BASIC27.29■■□□□ 1.96
TRIM49BA6NDI0 AGAP1-202ENST00000336665 5427 ntAPPRIS P3 TSL 1 (best) BASIC27.28■■□□□ 1.96
TRIM49BA6NDI0 GATA2-AS1-202ENST00000468377 1578 ntTSL 2 BASIC27.28■■□□□ 1.96
TRIM49BA6NDI0 TSPAN4-207ENST00000397411 1025 ntAPPRIS P1 TSL 2 BASIC27.28■■□□□ 1.96
TRIM49BA6NDI0 FEZ2-204ENST00000405912 1931 ntTSL 1 (best) BASIC27.28■■□□□ 1.96
TRIM49BA6NDI0 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC27.27■■□□□ 1.96
TRIM49BA6NDI0 AC142472.1-201ENST00000612013 1741 ntBASIC27.27■■□□□ 1.96
Retrieved 100 of 98,524 protein–RNA pairs in 10.7 ms