Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 AKAP17A-202ENST00000381261 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC21.36■■□□□ 1.01
CHMP1AQ9HD42 SHF-208ENST00000560734 1731 ntTSL 3 BASIC21.36■■□□□ 1.01
CHMP1AQ9HD42 GPS1-204ENST00000392358 2276 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
CHMP1AQ9HD42 CFAP99-207ENST00000635017 2298 ntTSL 5 BASIC21.36■■□□□ 1.01
CHMP1AQ9HD42 QDPR-201ENST00000281243 1648 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
CHMP1AQ9HD42 AL449106.1-201ENST00000608517 1980 ntBASIC21.36■■□□□ 1.01
CHMP1AQ9HD42 KLC2-205ENST00000394078 1557 ntTSL 5 BASIC21.36■■□□□ 1.01
CHMP1AQ9HD42 FGF19-201ENST00000294312 2447 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
CHMP1AQ9HD42 AC005559.1-201ENST00000589661 871 ntBASIC21.35■■□□□ 1.01
CHMP1AQ9HD42 TXNL4A-210ENST00000591711 669 ntTSL 2 BASIC21.35■■□□□ 1.01
CHMP1AQ9HD42 SHD-201ENST00000543264 2577 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
CHMP1AQ9HD42 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC21.35■■□□□ 1.01
CHMP1AQ9HD42 RFLNA-205ENST00000546355 2354 ntAPPRIS ALT1 TSL 1 (best) BASIC21.34■■□□□ 1.01
CHMP1AQ9HD42 MFSD12-202ENST00000389395 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC21.34■■□□□ 1.01
CHMP1AQ9HD42 CCDC61-204ENST00000595358 1817 ntAPPRIS P2 TSL 5 BASIC21.34■■□□□ 1.01
CHMP1AQ9HD42 GPR150-201ENST00000380007 2065 ntAPPRIS P1 BASIC21.34■■□□□ 1.01
CHMP1AQ9HD42 GTF3C4-202ENST00000483873 1417 ntTSL 3 BASIC21.34■■□□□ 1.01
CHMP1AQ9HD42 KLC1-225ENST00000557575 2188 ntTSL 5 BASIC21.33■■□□□ 1.01
CHMP1AQ9HD42 DACT2-202ENST00000366796 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC21.33■■□□□ 1.01
CHMP1AQ9HD42 ACAA1-220ENST00000627515 1862 ntTSL 5 BASIC21.33■■□□□ 1.01
CHMP1AQ9HD42 MYH7B-209ENST00000618182 6197 ntAPPRIS ALT2 TSL 5 BASIC21.33■■□□□ 1.01
CHMP1AQ9HD42 PSMG4-202ENST00000380305 489 ntTSL 5 BASIC21.33■■□□□ 1.01
CHMP1AQ9HD42 UBALD2-203ENST00000589240 660 ntTSL 2 BASIC21.33■■□□□ 1.01
CHMP1AQ9HD42 RPUSD1-208ENST00000567114 1835 ntTSL 2 BASIC21.33■■□□□ 1.01
CHMP1AQ9HD42 HSD11B1L-202ENST00000339423 1660 ntAPPRIS P3 TSL 1 (best) BASIC21.33■■□□□ 1
CHMP1AQ9HD42 CPTP-201ENST00000343938 2190 ntAPPRIS P1 TSL 2 BASIC21.33■■□□□ 1
CHMP1AQ9HD42 FANCE-201ENST00000229769 2554 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
CHMP1AQ9HD42 SPG21-201ENST00000204566 1822 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
CHMP1AQ9HD42 SNTA1-201ENST00000217381 2342 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
CHMP1AQ9HD42 ZNF639-209ENST00000496856 2033 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
CHMP1AQ9HD42 MKRN1-202ENST00000443720 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
CHMP1AQ9HD42 SV2B-203ENST00000545111 2099 ntTSL 2 BASIC21.32■■□□□ 1
CHMP1AQ9HD42 KCNQ5-208ENST00000414165 6236 ntTSL 5 BASIC21.31■■□□□ 1
CHMP1AQ9HD42 ARTN-204ENST00000438616 889 ntTSL 1 (best) BASIC21.31■■□□□ 1
CHMP1AQ9HD42 BCAP31-207ENST00000458587 1810 ntTSL 1 (best) BASIC21.31■■□□□ 1
CHMP1AQ9HD42 AP002414.2-202ENST00000590929 1450 ntBASIC21.31■■□□□ 1
CHMP1AQ9HD42 OTUD5-203ENST00000396743 2682 ntAPPRIS ALT1 TSL 1 (best) BASIC21.31■■□□□ 1
CHMP1AQ9HD42 DHRS13-201ENST00000378895 1921 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
CHMP1AQ9HD42 NPAS3-203ENST00000357798 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
CHMP1AQ9HD42 GSR-206ENST00000546342 1482 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
CHMP1AQ9HD42 CTSA-203ENST00000372459 1972 ntTSL 1 (best) BASIC21.3■■□□□ 1
CHMP1AQ9HD42 MSANTD2-201ENST00000239614 2495 ntTSL 2 BASIC21.3■■□□□ 1
CHMP1AQ9HD42 NELFB-201ENST00000343053 2698 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
CHMP1AQ9HD42 MAZ-205ENST00000562337 1574 ntTSL 3 BASIC21.29■■□□□ 1
CHMP1AQ9HD42 HNRNPLP2-201ENST00000568980 1570 ntBASIC21.29■■□□□ 1
CHMP1AQ9HD42 SUZ12P1-203ENST00000578195 985 ntBASIC21.29■■□□□ 1
CHMP1AQ9HD42 PDCD2-215ENST00000614056 1287 ntTSL 2 BASIC21.29■■□□□ 1
CHMP1AQ9HD42 MBOAT7-201ENST00000245615 2529 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
CHMP1AQ9HD42 KANSL2-215ENST00000553086 1830 ntTSL 5 BASIC21.29■■□□□ 1
CHMP1AQ9HD42 TMEM64-203ENST00000458549 4997 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
CHMP1AQ9HD42 PPP1R14B-201ENST00000309318 982 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
CHMP1AQ9HD42 PKM-204ENST00000449901 2526 ntTSL 2 BASIC21.28■■□□□ 1
CHMP1AQ9HD42 HTR6-201ENST00000289753 1984 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
CHMP1AQ9HD42 CAPN10-204ENST00000354082 1999 ntTSL 1 (best) BASIC21.28■■□□□ 1
CHMP1AQ9HD42 AC027237.3-202ENST00000558617 1778 ntTSL 2 BASIC21.28■■□□□ 1
CHMP1AQ9HD42 TSEN34-203ENST00000396388 1349 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
CHMP1AQ9HD42 BIN1-210ENST00000393041 2272 ntTSL 1 (best) BASIC21.27■■□□□ 1
CHMP1AQ9HD42 MEST-211ENST00000437945 1455 ntTSL 5 BASIC21.27■■□□□ 1
CHMP1AQ9HD42 NKPD1-202ENST00000589776 1950 ntAPPRIS P1 BASIC21.27■■□□□ 1
CHMP1AQ9HD42 LMO1-202ENST00000428101 1038 ntAPPRIS ALT1 TSL 1 (best) BASIC21.27■■□□□ 1
CHMP1AQ9HD42 NAA50-207ENST00000493900 962 ntAPPRIS ALT1 TSL 2 BASIC21.27■■□□□ 1
CHMP1AQ9HD42 AC108673.1-201ENST00000510422 1159 ntBASIC21.27■■□□□ 1
CHMP1AQ9HD42 UBE2S-203ENST00000589978 496 ntTSL 5 BASIC21.27■■□□□ 1
CHMP1AQ9HD42 CLK2-203ENST00000368361 2166 ntAPPRIS ALT1 TSL 1 (best) BASIC21.26■□□□□ 0.99
CHMP1AQ9HD42 PIK3R2-207ENST00000617130 2187 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
CHMP1AQ9HD42 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
CHMP1AQ9HD42 MAD2L2-205ENST00000376669 864 ntTSL 3 BASIC21.26■□□□□ 0.99
CHMP1AQ9HD42 C16orf59-202ENST00000483320 1709 ntAPPRIS ALT2 TSL 2 BASIC21.26■□□□□ 0.99
CHMP1AQ9HD42 CD6-206ENST00000452451 1782 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
CHMP1AQ9HD42 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC21.25■□□□□ 0.99
CHMP1AQ9HD42 DTNBP1-202ENST00000344537 1403 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
CHMP1AQ9HD42 UCK1-204ENST00000372215 2167 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
CHMP1AQ9HD42 RASL10A-202ENST00000401450 1720 ntTSL 2 BASIC21.25■□□□□ 0.99
CHMP1AQ9HD42 NR6A1-203ENST00000416460 1898 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
CHMP1AQ9HD42 AL133346.1-201ENST00000435287 495 ntTSL 2 BASIC21.25■□□□□ 0.99
CHMP1AQ9HD42 C11orf80-210ENST00000527634 1666 ntAPPRIS ALT2 TSL 5 BASIC21.24■□□□□ 0.99
CHMP1AQ9HD42 NKX2-1-204ENST00000522719 1417 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CHMP1AQ9HD42 RCC1L-205ENST00000618035 1409 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
CHMP1AQ9HD42 POLR1D-201ENST00000302979 1166 ntAPPRIS P2 TSL 1 (best) BASIC21.24■□□□□ 0.99
CHMP1AQ9HD42 ECI1-203ENST00000562238 948 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
CHMP1AQ9HD42 KHSRP-201ENST00000398148 2993 ntAPPRIS P2 TSL 1 (best) BASIC21.24■□□□□ 0.99
CHMP1AQ9HD42 AC091230.1-202ENST00000564823 5356 ntTSL 2 BASIC21.24■□□□□ 0.99
CHMP1AQ9HD42 EI24-212ENST00000615917 1407 ntTSL 2 BASIC21.23■□□□□ 0.99
CHMP1AQ9HD42 LYNX1-208ENST00000615007 1293 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
CHMP1AQ9HD42 TANGO2-214ENST00000447208 2086 ntTSL 3 BASIC21.22■□□□□ 0.99
CHMP1AQ9HD42 RCE1-201ENST00000309657 1485 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
CHMP1AQ9HD42 MYBL1-204ENST00000522677 5192 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
CHMP1AQ9HD42 FOXA3-201ENST00000302177 1989 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
CHMP1AQ9HD42 ETS1-201ENST00000319397 2231 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
CHMP1AQ9HD42 FAM189B-210ENST00000621094 1335 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
CHMP1AQ9HD42 AC135983.2-203ENST00000454486 1613 ntBASIC21.22■□□□□ 0.99
CHMP1AQ9HD42 GKAP1-202ENST00000376365 1511 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
CHMP1AQ9HD42 TCEA2-202ENST00000343484 1235 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
CHMP1AQ9HD42 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC21.21■□□□□ 0.99
CHMP1AQ9HD42 SH3GL1-201ENST00000269886 2516 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
CHMP1AQ9HD42 MAZ-202ENST00000322945 2532 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
CHMP1AQ9HD42 ZDHHC16-204ENST00000370842 1877 ntAPPRIS ALT1 TSL 5 BASIC21.2■□□□□ 0.98
CHMP1AQ9HD42 AKAP8L-208ENST00000595465 1933 ntTSL 2 BASIC21.2■□□□□ 0.98
CHMP1AQ9HD42 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC21.2■□□□□ 0.98
CHMP1AQ9HD42 HIST2H3C-201ENST00000369158 1656 ntAPPRIS P1 BASIC21.2■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 12.2 ms