Protein–RNA interactions for Protein: Q9H9J4

USP42, Ubiquitin carboxyl-terminal hydrolase 42, humanhuman

Known RBP Predictions only

Length 1,324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP42Q9H9J4 TXNL4A-208ENST00000588162 752 ntTSL 2 BASIC32.44■■■□□ 2.78
USP42Q9H9J4 ABCB10P1-201ENST00000614297 2181 ntBASIC32.43■■■□□ 2.78
USP42Q9H9J4 RARRES2P1-201ENST00000474487 481 ntBASIC32.43■■■□□ 2.78
USP42Q9H9J4 SOD3-201ENST00000382120 1526 ntAPPRIS P1 TSL 1 (best) BASIC32.42■■■□□ 2.78
USP42Q9H9J4 KIAA2013-202ENST00000376576 2539 ntTSL 2 BASIC32.42■■■□□ 2.78
USP42Q9H9J4 IZUMO4-202ENST00000395301 1021 ntAPPRIS ALT2 TSL 1 (best) BASIC32.42■■■□□ 2.78
USP42Q9H9J4 SPATA33-209ENST00000579310 1490 ntAPPRIS ALT2 TSL 2 BASIC32.41■■■□□ 2.78
USP42Q9H9J4 MED25-210ENST00000612854 801 ntTSL 5 BASIC32.41■■■□□ 2.78
USP42Q9H9J4 MED25-213ENST00000620467 1293 ntTSL 1 (best) BASIC32.41■■■□□ 2.78
USP42Q9H9J4 MED25-214ENST00000622402 642 ntTSL 5 BASIC32.41■■■□□ 2.78
USP42Q9H9J4 PI4KAP2-202ENST00000450651 2294 ntTSL 5 BASIC32.41■■■□□ 2.78
USP42Q9H9J4 C19orf12-207ENST00000592153 1504 ntTSL 1 (best) BASIC32.41■■■□□ 2.78
USP42Q9H9J4 CCDC160-202ENST00000517294 1790 ntAPPRIS P1 TSL 5 BASIC32.4■■■□□ 2.78
USP42Q9H9J4 C20orf24-201ENST00000342422 896 ntTSL 2 BASIC32.4■■■□□ 2.78
USP42Q9H9J4 C20orf24-202ENST00000344795 1114 ntAPPRIS P1 TSL 1 (best) BASIC32.4■■■□□ 2.78
USP42Q9H9J4 KMT2E-AS1-201ENST00000453677 736 ntTSL 3 BASIC32.4■■■□□ 2.78
USP42Q9H9J4 MKRN1-202ENST00000443720 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC32.4■■■□□ 2.78
USP42Q9H9J4 MKNK2-202ENST00000309340 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC32.39■■■□□ 2.78
USP42Q9H9J4 MORF4L1-203ENST00000426013 1880 ntAPPRIS P1 TSL 1 (best) BASIC32.39■■■□□ 2.78
USP42Q9H9J4 AL157400.5-201ENST00000507624 621 ntBASIC32.38■■■□□ 2.77
USP42Q9H9J4 MOB2-207ENST00000614710 705 ntTSL 5 BASIC32.38■■■□□ 2.77
USP42Q9H9J4 AMN-201ENST00000299155 1907 ntAPPRIS P2 TSL 1 (best) BASIC32.37■■■□□ 2.77
USP42Q9H9J4 LOR-201ENST00000368742 1230 ntAPPRIS P1 TSL 1 (best) BASIC32.37■■■□□ 2.77
USP42Q9H9J4 HNRNPAB-202ENST00000358344 1796 ntAPPRIS P4 TSL 1 (best) BASIC32.36■■■□□ 2.77
USP42Q9H9J4 SLC52A2-201ENST00000329994 1896 ntAPPRIS P1 TSL 1 (best) BASIC32.36■■■□□ 2.77
USP42Q9H9J4 FAM149A-201ENST00000227065 2708 ntAPPRIS P2 TSL 1 (best) BASIC32.35■■■□□ 2.77
USP42Q9H9J4 PHOX2A-201ENST00000298231 1699 ntAPPRIS P1 TSL 1 (best) BASIC32.35■■■□□ 2.77
USP42Q9H9J4 KLF16-204ENST00000617223 1133 ntAPPRIS P1 TSL 1 (best) BASIC32.35■■■□□ 2.77
USP42Q9H9J4 MEST-211ENST00000437945 1455 ntTSL 5 BASIC32.35■■■□□ 2.77
USP42Q9H9J4 DCBLD1-201ENST00000296955 1979 ntAPPRIS P2 TSL 1 (best) BASIC32.35■■■□□ 2.77
USP42Q9H9J4 ZNF513-201ENST00000323703 2139 ntAPPRIS P1 TSL 1 (best) BASIC32.34■■■□□ 2.77
USP42Q9H9J4 LYPD6B-204ENST00000409876 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC32.34■■■□□ 2.77
USP42Q9H9J4 ARL6IP4-208ENST00000439686 796 ntAPPRIS ALT2 TSL 3 BASIC32.33■■■□□ 2.77
USP42Q9H9J4 CGREF1-203ENST00000402394 1906 ntAPPRIS P2 TSL 2 BASIC32.33■■■□□ 2.77
USP42Q9H9J4 AC126177.7-201ENST00000547904 679 ntBASIC32.32■■■□□ 2.76
USP42Q9H9J4 MIR1-1HG-202ENST00000624914 1220 ntTSL 1 (best) BASIC32.32■■■□□ 2.76
USP42Q9H9J4 SLC35D2-201ENST00000253270 1613 ntAPPRIS P1 TSL 1 (best) BASIC32.32■■■□□ 2.76
USP42Q9H9J4 MAZ-205ENST00000562337 1574 ntTSL 3 BASIC32.32■■■□□ 2.76
USP42Q9H9J4 CCDC88C-205ENST00000553403 1651 ntTSL 1 (best) BASIC32.32■■■□□ 2.76
USP42Q9H9J4 RUNX2-205ENST00000465038 1770 ntAPPRIS P4 TSL 5 BASIC32.31■■■□□ 2.76
USP42Q9H9J4 ZDHHC3-203ENST00000342790 1336 ntTSL 5 BASIC32.31■■■□□ 2.76
USP42Q9H9J4 WDR86-204ENST00000477459 1428 ntTSL 2 BASIC32.3■■■□□ 2.76
USP42Q9H9J4 FAM222B-205ENST00000577682 549 ntTSL 4 BASIC32.3■■■□□ 2.76
USP42Q9H9J4 SLC16A11-201ENST00000308009 1803 ntAPPRIS P2 TSL 1 (best) BASIC32.3■■■□□ 2.76
USP42Q9H9J4 SSBP3-202ENST00000357475 1533 ntTSL 1 (best) BASIC32.29■■■□□ 2.76
USP42Q9H9J4 EID2-201ENST00000390658 1629 ntAPPRIS P1 BASIC32.29■■■□□ 2.76
USP42Q9H9J4 TM6SF1-202ENST00000322019 2074 ntAPPRIS P1 TSL 1 (best) BASIC32.29■■■□□ 2.76
USP42Q9H9J4 INPP4A-203ENST00000409463 1565 ntTSL 1 (best) BASIC32.29■■■□□ 2.76
USP42Q9H9J4 BCL3-201ENST00000164227 2038 ntAPPRIS P1 TSL 1 (best) BASIC32.29■■■□□ 2.76
USP42Q9H9J4 TNFRSF12A-201ENST00000326577 1033 ntAPPRIS P1 TSL 1 (best) BASIC32.28■■■□□ 2.76
USP42Q9H9J4 SEC11C-204ENST00000587834 1202 ntAPPRIS P1 TSL 1 (best) BASIC32.28■■■□□ 2.76
USP42Q9H9J4 SLC16A8-201ENST00000320521 1878 ntAPPRIS P1 TSL 1 (best) BASIC32.28■■■□□ 2.76
USP42Q9H9J4 IFI30-201ENST00000407280 1134 ntAPPRIS P1 TSL 1 (best) BASIC32.27■■■□□ 2.76
USP42Q9H9J4 ILDR2-208ENST00000529387 1238 ntTSL 5 BASIC32.27■■■□□ 2.76
USP42Q9H9J4 ANKRD13D-211ENST00000511455 2139 ntAPPRIS P1 TSL 1 (best) BASIC32.27■■■□□ 2.76
USP42Q9H9J4 KCTD17-202ENST00000403888 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC32.27■■■□□ 2.76
USP42Q9H9J4 OXLD1-201ENST00000374741 620 ntAPPRIS P1 TSL 1 (best) BASIC32.26■■■□□ 2.76
USP42Q9H9J4 FOXA2-202ENST00000419308 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC32.26■■■□□ 2.76
USP42Q9H9J4 ATPAF1-202ENST00000371937 1827 ntAPPRIS P1 TSL 1 (best) BASIC32.26■■■□□ 2.76
USP42Q9H9J4 FEZ1-201ENST00000278919 1748 ntAPPRIS P1 TSL 1 (best) BASIC32.26■■■□□ 2.76
USP42Q9H9J4 TMEM150A-202ENST00000334462 1518 ntAPPRIS P1 TSL 1 (best) BASIC32.26■■■□□ 2.76
USP42Q9H9J4 EFNA1-202ENST00000368407 1926 ntAPPRIS P1 TSL 1 (best) BASIC32.26■■■□□ 2.75
USP42Q9H9J4 UBE2I-213ENST00000566587 1098 ntAPPRIS P1 TSL 2 BASIC32.26■■■□□ 2.75
USP42Q9H9J4 AC129492.7-201ENST00000622992 756 ntBASIC32.26■■■□□ 2.75
USP42Q9H9J4 ITPKA-201ENST00000260386 1824 ntAPPRIS P1 TSL 1 (best) BASIC32.25■■■□□ 2.75
USP42Q9H9J4 COPRS-201ENST00000302362 968 ntAPPRIS P1 TSL 1 (best) BASIC32.25■■■□□ 2.75
USP42Q9H9J4 AC148477.1-201ENST00000537720 476 ntTSL 3 BASIC32.25■■■□□ 2.75
USP42Q9H9J4 AC007029.1-201ENST00000604183 313 ntBASIC32.25■■■□□ 2.75
USP42Q9H9J4 FAM78B-201ENST00000338353 1597 ntAPPRIS P1 TSL 1 (best) BASIC32.24■■■□□ 2.75
USP42Q9H9J4 MMP28-203ENST00000612672 1092 ntTSL 1 (best) BASIC32.24■■■□□ 2.75
USP42Q9H9J4 SHOX2-204ENST00000483851 1866 ntAPPRIS ALT2 TSL 2 BASIC32.23■■■□□ 2.75
USP42Q9H9J4 RASSF8-202ENST00000381352 2320 ntTSL 1 (best) BASIC32.23■■■□□ 2.75
USP42Q9H9J4 PROSER2-202ENST00000379200 1232 ntAPPRIS ALT2 BASIC32.23■■■□□ 2.75
USP42Q9H9J4 FLVCR1-AS1-203ENST00000426161 892 ntTSL 1 (best) BASIC32.23■■■□□ 2.75
USP42Q9H9J4 AC138207.2-201ENST00000583377 492 ntTSL 2 BASIC32.23■■■□□ 2.75
USP42Q9H9J4 GIPC1-203ENST00000393033 1926 ntAPPRIS P1 TSL 1 (best) BASIC32.22■■■□□ 2.75
USP42Q9H9J4 LYSMD2-202ENST00000454181 1228 ntTSL 1 (best) BASIC32.22■■■□□ 2.75
USP42Q9H9J4 LTC4S-205ENST00000486713 496 ntTSL 2 BASIC32.19■■■□□ 2.74
USP42Q9H9J4 AL592293.1-201ENST00000502889 1188 ntBASIC32.19■■■□□ 2.74
USP42Q9H9J4 C16orf52-207ENST00000569656 1257 ntTSL 5 BASIC32.19■■■□□ 2.74
USP42Q9H9J4 NEUROG2-201ENST00000313341 2287 ntAPPRIS P1 TSL 1 (best) BASIC32.18■■■□□ 2.74
USP42Q9H9J4 CIB2-201ENST00000258930 1598 ntAPPRIS P1 TSL 1 (best) BASIC32.18■■■□□ 2.74
USP42Q9H9J4 AC009831.1-201ENST00000580420 1582 ntBASIC32.18■■■□□ 2.74
USP42Q9H9J4 ATXN3-252ENST00000620536 1044 ntTSL 5 BASIC32.18■■■□□ 2.74
USP42Q9H9J4 ATXN3-253ENST00000621269 936 ntTSL 5 BASIC32.18■■■□□ 2.74
USP42Q9H9J4 ZNF787-203ENST00000610935 1925 ntAPPRIS P1 TSL 1 (best) BASIC32.17■■■□□ 2.74
USP42Q9H9J4 AL121899.1-202ENST00000411839 536 ntTSL 5 BASIC32.17■■■□□ 2.74
USP42Q9H9J4 HES4-204ENST00000484667 667 ntTSL 3 BASIC32.17■■■□□ 2.74
USP42Q9H9J4 KCNG2-201ENST00000316249 1401 ntAPPRIS P1 TSL 1 (best) BASIC32.17■■■□□ 2.74
USP42Q9H9J4 IL17D-201ENST00000304920 1861 ntAPPRIS P1 TSL 1 (best) BASIC32.16■■■□□ 2.74
USP42Q9H9J4 CUL4A-202ENST00000375440 2364 ntAPPRIS P1 TSL 1 (best) BASIC32.16■■■□□ 2.74
USP42Q9H9J4 SERP2-201ENST00000379179 784 ntAPPRIS P1 TSL 1 (best) BASIC32.15■■■□□ 2.74
USP42Q9H9J4 PYY2-202ENST00000441253 1076 ntTSL 1 (best) BASIC32.15■■■□□ 2.74
USP42Q9H9J4 RPL27A-206ENST00000530022 878 ntTSL 1 (best) BASIC32.15■■■□□ 2.74
USP42Q9H9J4 EIF5A-211ENST00000576930 1439 ntAPPRIS P1 TSL 5 BASIC32.15■■■□□ 2.74
USP42Q9H9J4 DHRS13-203ENST00000426464 1569 ntTSL 2 BASIC32.15■■■□□ 2.74
USP42Q9H9J4 EMC10-202ENST00000376918 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC32.14■■■□□ 2.74
USP42Q9H9J4 PRELID2-207ENST00000511435 1894 ntAPPRIS ALT1 TSL 2 BASIC32.14■■■□□ 2.74
USP42Q9H9J4 PSMG3-202ENST00000288607 1391 ntAPPRIS P1 TSL 1 (best) BASIC32.14■■■□□ 2.74
USP42Q9H9J4 CUEDC1-201ENST00000360238 2193 ntAPPRIS P1 TSL 2 BASIC32.14■■■□□ 2.73
Retrieved 100 of 98,524 protein–RNA pairs in 74.6 ms