Protein–RNA interactions for Protein: Q99909

SSX3, Protein SSX3, humanhuman

Predictions only

Length 188 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSX3Q99909 ACTR3B-201ENST00000256001 2216 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
SSX3Q99909 MTCH1-201ENST00000373616 2006 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
SSX3Q99909 ARL8A-201ENST00000272217 1793 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
SSX3Q99909 HES6-205ENST00000409356 528 ntTSL 2 BASIC20.77■□□□□ 0.92
SSX3Q99909 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC20.77■□□□□ 0.92
SSX3Q99909 SNTB1-202ENST00000517992 2273 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
SSX3Q99909 SP8-201ENST00000361443 1714 ntAPPRIS P3 TSL 1 (best) BASIC20.77■□□□□ 0.92
SSX3Q99909 FAM193A-211ENST00000637812 4885 ntAPPRIS ALT2 TSL 5 BASIC20.76■□□□□ 0.91
SSX3Q99909 C1QTNF8-201ENST00000328449 1627 ntAPPRIS P1 TSL 5 BASIC20.76■□□□□ 0.91
SSX3Q99909 PPP2R2D-201ENST00000455566 5738 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
SSX3Q99909 TSPAN33-201ENST00000486685 1863 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
SSX3Q99909 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC20.76■□□□□ 0.91
SSX3Q99909 CDH24-206ENST00000610348 2037 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
SSX3Q99909 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC20.76■□□□□ 0.91
SSX3Q99909 FOXP4-203ENST00000373060 5948 ntTSL 5 BASIC20.76■□□□□ 0.91
SSX3Q99909 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
SSX3Q99909 MIR4449-201ENST00000578365 66 ntBASIC20.75■□□□□ 0.91
SSX3Q99909 HDGF-201ENST00000357325 2380 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
SSX3Q99909 ADAT3-201ENST00000329478 1620 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
SSX3Q99909 HSD11B1L-202ENST00000339423 1660 ntAPPRIS P3 TSL 1 (best) BASIC20.74■□□□□ 0.91
SSX3Q99909 THAP11-201ENST00000303596 2114 ntAPPRIS P1 BASIC20.74■□□□□ 0.91
SSX3Q99909 WTAP-206ENST00000621533 2109 ntAPPRIS P1 TSL 2 BASIC20.74■□□□□ 0.91
SSX3Q99909 MORF4L1-203ENST00000426013 1880 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
SSX3Q99909 REXO4-202ENST00000371942 2360 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
SSX3Q99909 AC135983.2-203ENST00000454486 1613 ntBASIC20.74■□□□□ 0.91
SSX3Q99909 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
SSX3Q99909 CHST11-202ENST00000546689 756 ntTSL 2 BASIC20.73■□□□□ 0.91
SSX3Q99909 SMARCD3-203ENST00000392811 2018 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
SSX3Q99909 SHOX2-204ENST00000483851 1866 ntAPPRIS ALT2 TSL 2 BASIC20.73■□□□□ 0.91
SSX3Q99909 ANO1-202ENST00000355303 4790 ntAPPRIS P2 TSL 1 (best) BASIC20.73■□□□□ 0.91
SSX3Q99909 C16orf59-202ENST00000483320 1709 ntAPPRIS ALT2 TSL 2 BASIC20.73■□□□□ 0.91
SSX3Q99909 CPNE1-202ENST00000352393 2147 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
SSX3Q99909 ANKRD16-201ENST00000191063 1567 ntTSL 3 BASIC20.72■□□□□ 0.91
SSX3Q99909 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC20.72■□□□□ 0.91
SSX3Q99909 EFEMP2-201ENST00000307998 2034 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
SSX3Q99909 UBAC1-201ENST00000371756 1867 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
SSX3Q99909 SHF-207ENST00000560540 2062 ntTSL 5 BASIC20.72■□□□□ 0.91
SSX3Q99909 SCCPDH-201ENST00000366510 2503 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
SSX3Q99909 RDX-210ENST00000530301 1549 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
SSX3Q99909 WHAMMP2-203ENST00000563942 1603 ntBASIC20.71■□□□□ 0.91
SSX3Q99909 TLE6-201ENST00000246112 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
SSX3Q99909 CCND3-202ENST00000372988 2133 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
SSX3Q99909 CTXN1-201ENST00000318978 1274 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
SSX3Q99909 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC20.71■□□□□ 0.91
SSX3Q99909 C16orf95-205ENST00000567970 1031 ntAPPRIS ALT2 TSL 5 BASIC20.71■□□□□ 0.91
SSX3Q99909 CCDC160-202ENST00000517294 1790 ntAPPRIS P1 TSL 5 BASIC20.71■□□□□ 0.91
SSX3Q99909 BCL7C-201ENST00000215115 1740 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
SSX3Q99909 PPP1R26-201ENST00000356818 4932 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
SSX3Q99909 METRNL-202ENST00000570778 967 ntTSL 5 BASIC20.7■□□□□ 0.9
SSX3Q99909 CCDC88C-205ENST00000553403 1651 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
SSX3Q99909 C2orf88-204ENST00000409870 1441 ntAPPRIS P1 TSL 2 BASIC20.7■□□□□ 0.9
SSX3Q99909 CARM1-202ENST00000344150 2722 ntAPPRIS ALT2 TSL 5 BASIC20.69■□□□□ 0.9
SSX3Q99909 FAM57A-202ENST00000308278 2412 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
SSX3Q99909 GPR75-ASB3-201ENST00000406625 2113 ntAPPRIS P1 TSL 2 BASIC20.69■□□□□ 0.9
SSX3Q99909 ADAP1-201ENST00000265846 2363 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
SSX3Q99909 SNAI3-AS1-204ENST00000567997 2048 ntBASIC20.68■□□□□ 0.9
SSX3Q99909 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
SSX3Q99909 ROM1-201ENST00000278833 1878 ntAPPRIS P2 TSL 1 (best) BASIC20.68■□□□□ 0.9
SSX3Q99909 MAPKAPK2-201ENST00000294981 2171 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
SSX3Q99909 AMZ2-201ENST00000359783 1722 ntTSL 5 BASIC20.67■□□□□ 0.9
SSX3Q99909 MRAP2-201ENST00000257776 2153 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
SSX3Q99909 ATP8B2-201ENST00000368487 1523 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
SSX3Q99909 MARCH11-201ENST00000332432 1741 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
SSX3Q99909 SLC16A11-201ENST00000308009 1803 ntAPPRIS P2 TSL 1 (best) BASIC20.67■□□□□ 0.9
SSX3Q99909 IRX1-201ENST00000302006 1858 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
SSX3Q99909 STARD10-220ENST00000545082 1085 ntTSL 3 BASIC20.66■□□□□ 0.9
SSX3Q99909 SPTSSA-201ENST00000298130 2777 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
SSX3Q99909 NRXN1-205ENST00000401710 2873 ntTSL 5 BASIC20.65■□□□□ 0.9
SSX3Q99909 CTU1-201ENST00000421832 2087 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
SSX3Q99909 DTNBP1-212ENST00000622898 1305 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
SSX3Q99909 CENPV-201ENST00000299736 1165 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
SSX3Q99909 TMEM147-202ENST00000392204 935 ntTSL 2 BASIC20.65■□□□□ 0.9
SSX3Q99909 AC092902.2-221ENST00000628476 965 ntTSL 5 BASIC20.65■□□□□ 0.9
SSX3Q99909 MARCKSL1-201ENST00000329421 1699 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
SSX3Q99909 MAPK8IP1P1-201ENST00000574657 1439 ntBASIC20.64■□□□□ 0.89
SSX3Q99909 FOXQ1-201ENST00000296839 2309 ntAPPRIS P1 BASIC20.64■□□□□ 0.89
SSX3Q99909 AL121749.1-202ENST00000609313 2153 ntBASIC20.64■□□□□ 0.89
SSX3Q99909 VEGFA-208ENST00000417285 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
SSX3Q99909 MYH7B-209ENST00000618182 6197 ntAPPRIS ALT2 TSL 5 BASIC20.64■□□□□ 0.89
SSX3Q99909 MAZ-201ENST00000219782 2698 ntAPPRIS P4 TSL 1 (best) BASIC20.63■□□□□ 0.89
SSX3Q99909 NKX2-1-204ENST00000522719 1417 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
SSX3Q99909 ARL6IP4-211ENST00000454885 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
SSX3Q99909 AC091230.1-202ENST00000564823 5356 ntTSL 2 BASIC20.62■□□□□ 0.89
SSX3Q99909 CREM-210ENST00000374721 2020 ntTSL 5 BASIC20.62■□□□□ 0.89
SSX3Q99909 SLC35D2-201ENST00000253270 1613 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
SSX3Q99909 FOXE3-201ENST00000335071 1981 ntAPPRIS P1 BASIC20.62■□□□□ 0.89
SSX3Q99909 OTUD5-202ENST00000376488 2692 ntAPPRIS ALT1 TSL 1 (best) BASIC20.62■□□□□ 0.89
SSX3Q99909 NAPA-201ENST00000263354 1839 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
SSX3Q99909 CCKBR-201ENST00000334619 2121 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
SSX3Q99909 SLC30A10-202ENST00000366926 1915 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
SSX3Q99909 PRELID2-207ENST00000511435 1894 ntAPPRIS ALT1 TSL 2 BASIC20.61■□□□□ 0.89
SSX3Q99909 HDGF-210ENST00000537739 2073 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
SSX3Q99909 VEGFC-202ENST00000618562 2064 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
SSX3Q99909 PLBD2-202ENST00000545182 2321 ntTSL 2 BASIC20.61■□□□□ 0.89
SSX3Q99909 DDX42-201ENST00000359353 2783 ntTSL 5 BASIC20.61■□□□□ 0.89
SSX3Q99909 MKRN1-202ENST00000443720 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
SSX3Q99909 INPP4A-203ENST00000409463 1565 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
SSX3Q99909 FOXO1-201ENST00000379561 5735 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
SSX3Q99909 TSPAN4-207ENST00000397411 1025 ntAPPRIS P1 TSL 2 BASIC20.6■□□□□ 0.89
SSX3Q99909 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC20.6■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 19.2 ms