Protein–RNA interactions for Protein: Q86VR2

RETREG3, Reticulophagy regulator 3, humanhuman

Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RETREG3Q86VR2 POLR1D-201ENST00000302979 1166 ntAPPRIS P2 TSL 1 (best) BASIC23.95■■□□□ 1.42
RETREG3Q86VR2 MZT2B-202ENST00000409255 769 ntAPPRIS ALT2 TSL 5 BASIC23.95■■□□□ 1.42
RETREG3Q86VR2 PPM1B-202ENST00000345249 1713 ntTSL 1 (best) BASIC23.95■■□□□ 1.42
RETREG3Q86VR2 POU2F2-208ENST00000529952 1716 ntAPPRIS ALT2 TSL 1 (best) BASIC23.95■■□□□ 1.42
RETREG3Q86VR2 HIST2H3C-201ENST00000369158 1656 ntAPPRIS P1 BASIC23.95■■□□□ 1.42
RETREG3Q86VR2 HIST2H3A-201ENST00000403683 1656 ntAPPRIS P1 BASIC23.95■■□□□ 1.42
RETREG3Q86VR2 SYT12-205ENST00000527043 1661 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
RETREG3Q86VR2 TIGD3-201ENST00000309880 2012 ntAPPRIS P1 TSL 2 BASIC23.94■■□□□ 1.42
RETREG3Q86VR2 H2AFV-205ENST00000381124 628 ntTSL 3 BASIC23.94■■□□□ 1.42
RETREG3Q86VR2 JMJD8-202ENST00000562111 823 ntTSL 2 BASIC23.94■■□□□ 1.42
RETREG3Q86VR2 TXNL4A-210ENST00000591711 669 ntTSL 2 BASIC23.94■■□□□ 1.42
RETREG3Q86VR2 ALG2-203ENST00000476832 1880 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
RETREG3Q86VR2 VSIG8-201ENST00000368100 1818 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
RETREG3Q86VR2 DTNBP1-202ENST00000344537 1403 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
RETREG3Q86VR2 TERF2-207ENST00000567296 1129 ntTSL 1 (best) BASIC23.93■■□□□ 1.42
RETREG3Q86VR2 LZTS2-201ENST00000370220 5741 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
RETREG3Q86VR2 AC145676.1-201ENST00000514988 2004 ntBASIC23.93■■□□□ 1.42
RETREG3Q86VR2 PACS2-201ENST00000325438 3708 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
RETREG3Q86VR2 ANKS3-203ENST00000450067 2272 ntTSL 5 BASIC23.93■■□□□ 1.42
RETREG3Q86VR2 DDAH2-212ENST00000375789 1688 ntAPPRIS P1 TSL 2 BASIC23.92■■□□□ 1.42
RETREG3Q86VR2 DDAH2-213ENST00000375792 1688 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
RETREG3Q86VR2 HSF1-204ENST00000528838 2142 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
RETREG3Q86VR2 KLC1-203ENST00000347839 2271 ntTSL 5 BASIC23.92■■□□□ 1.42
RETREG3Q86VR2 SNX5-201ENST00000377759 2270 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
RETREG3Q86VR2 SMDT1-201ENST00000331479 1567 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
RETREG3Q86VR2 TSEN34-203ENST00000396388 1349 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
RETREG3Q86VR2 DNAH9-209ENST00000579828 1986 ntTSL 2 BASIC23.91■■□□□ 1.42
RETREG3Q86VR2 C8orf58-206ENST00000614574 1955 ntAPPRIS ALT2 TSL 5 BASIC23.91■■□□□ 1.42
RETREG3Q86VR2 GFRA4-202ENST00000319242 900 ntAPPRIS P4 TSL 1 (best) BASIC23.91■■□□□ 1.42
RETREG3Q86VR2 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC23.91■■□□□ 1.42
RETREG3Q86VR2 F8A1-201ENST00000610495 1713 ntAPPRIS P1 BASIC23.9■■□□□ 1.42
RETREG3Q86VR2 CNNM2-201ENST00000369875 2059 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
RETREG3Q86VR2 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC23.9■■□□□ 1.42
RETREG3Q86VR2 RCE1-201ENST00000309657 1485 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
RETREG3Q86VR2 UBE2S-203ENST00000589978 496 ntTSL 5 BASIC23.9■■□□□ 1.42
RETREG3Q86VR2 AC020928.2-201ENST00000588717 2197 ntBASIC23.9■■□□□ 1.42
RETREG3Q86VR2 FEZ1-201ENST00000278919 1748 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
RETREG3Q86VR2 C19orf47-202ENST00000392035 2126 ntAPPRIS ALT2 TSL 1 (best) BASIC23.89■■□□□ 1.42
RETREG3Q86VR2 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC23.89■■□□□ 1.41
RETREG3Q86VR2 GCLC-209ENST00000514004 2356 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
RETREG3Q86VR2 HNRNPL-201ENST00000221419 2471 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
RETREG3Q86VR2 RHBDD2-202ENST00000318622 1878 ntTSL 2 BASIC23.88■■□□□ 1.41
RETREG3Q86VR2 MEN1-204ENST00000377313 1871 ntAPPRIS P3 TSL 2 BASIC23.88■■□□□ 1.41
RETREG3Q86VR2 PSMG4-205ENST00000419065 629 ntTSL 2 BASIC23.88■■□□□ 1.41
RETREG3Q86VR2 RPS2-209ENST00000529806 993 ntTSL 3 BASIC23.88■■□□□ 1.41
RETREG3Q86VR2 CHML-205ENST00000638160 705 ntTSL 3 BASIC23.88■■□□□ 1.41
RETREG3Q86VR2 FANCE-201ENST00000229769 2554 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
RETREG3Q86VR2 SP5-201ENST00000375281 2033 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
RETREG3Q86VR2 DLX2-202ENST00000466293 1852 ntTSL 2 BASIC23.87■■□□□ 1.41
RETREG3Q86VR2 NELFB-202ENST00000634710 1887 ntAPPRIS P2 TSL 1 (best) BASIC23.87■■□□□ 1.41
RETREG3Q86VR2 PICALM-224ENST00000630913 2261 ntTSL 5 BASIC23.87■■□□□ 1.41
RETREG3Q86VR2 GDF1-201ENST00000247005 2517 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
RETREG3Q86VR2 CERS1-204ENST00000623882 2517 ntTSL 1 (best) BASIC23.87■■□□□ 1.41
RETREG3Q86VR2 FAM189B-210ENST00000621094 1335 ntTSL 1 (best) BASIC23.87■■□□□ 1.41
RETREG3Q86VR2 CDC16-211ENST00000628084 2058 ntTSL 5 BASIC23.87■■□□□ 1.41
RETREG3Q86VR2 FTCDNL1-201ENST00000416668 944 ntTSL 1 (best) BASIC23.87■■□□□ 1.41
RETREG3Q86VR2 BAMBI-201ENST00000375533 1877 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
RETREG3Q86VR2 MAPK8IP1P1-201ENST00000574657 1439 ntBASIC23.86■■□□□ 1.41
RETREG3Q86VR2 LYPLA1-215ENST00000618914 2482 ntTSL 5 BASIC23.86■■□□□ 1.41
RETREG3Q86VR2 SHD-201ENST00000543264 2577 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
RETREG3Q86VR2 EMID1-202ENST00000404755 2049 ntTSL 5 BASIC23.85■■□□□ 1.41
RETREG3Q86VR2 PSMG4-202ENST00000380305 489 ntTSL 5 BASIC23.85■■□□□ 1.41
RETREG3Q86VR2 FEZ2-204ENST00000405912 1931 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
RETREG3Q86VR2 KHSRP-201ENST00000398148 2993 ntAPPRIS P2 TSL 1 (best) BASIC23.84■■□□□ 1.41
RETREG3Q86VR2 SEC61G-204ENST00000450622 512 ntAPPRIS P1 TSL 2 BASIC23.84■■□□□ 1.41
RETREG3Q86VR2 CFAP73-201ENST00000335621 1514 ntAPPRIS P1 TSL 5 BASIC23.84■■□□□ 1.41
RETREG3Q86VR2 LYPD6B-203ENST00000409642 1577 ntAPPRIS P3 TSL 1 (best) BASIC23.83■■□□□ 1.41
RETREG3Q86VR2 TMEM150A-202ENST00000334462 1518 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
RETREG3Q86VR2 HABP4-202ENST00000375251 2304 ntTSL 1 (best) BASIC23.83■■□□□ 1.4
RETREG3Q86VR2 SETBP1-202ENST00000426838 1785 ntAPPRIS ALT2 TSL 1 (best) BASIC23.83■■□□□ 1.4
RETREG3Q86VR2 PKM-204ENST00000449901 2526 ntTSL 2 BASIC23.82■■□□□ 1.4
RETREG3Q86VR2 NPAS3-203ENST00000357798 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC23.82■■□□□ 1.4
RETREG3Q86VR2 INAFM1-201ENST00000552360 1255 ntAPPRIS P1 BASIC23.82■■□□□ 1.4
RETREG3Q86VR2 AC092755.2-201ENST00000560199 402 ntTSL 3 BASIC23.82■■□□□ 1.4
RETREG3Q86VR2 BIN1-210ENST00000393041 2272 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
RETREG3Q86VR2 UBE2J2-202ENST00000349431 1733 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
RETREG3Q86VR2 MAD2L2-201ENST00000235310 1860 ntAPPRIS P1 TSL 2 BASIC23.81■■□□□ 1.4
RETREG3Q86VR2 LINC00273-201ENST00000539813 1452 ntBASIC23.81■■□□□ 1.4
RETREG3Q86VR2 MAD2L2-205ENST00000376669 864 ntTSL 3 BASIC23.8■■□□□ 1.4
RETREG3Q86VR2 MAP3K3-210ENST00000584573 2480 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
RETREG3Q86VR2 UBALD2-203ENST00000589240 660 ntTSL 2 BASIC23.8■■□□□ 1.4
RETREG3Q86VR2 CAPNS1-215ENST00000628018 1509 ntAPPRIS ALT2 TSL 5 BASIC23.79■■□□□ 1.4
RETREG3Q86VR2 MIR6090-201ENST00000622481 60 ntBASIC23.79■■□□□ 1.4
RETREG3Q86VR2 RFFL-206ENST00000447669 2030 ntAPPRIS P1 TSL 5 BASIC23.79■■□□□ 1.4
RETREG3Q86VR2 CAPN10-208ENST00000404753 2570 ntAPPRIS ALT2 TSL 5 BASIC23.79■■□□□ 1.4
RETREG3Q86VR2 GKAP1-202ENST00000376365 1511 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
RETREG3Q86VR2 CEBPB-201ENST00000303004 1956 ntAPPRIS P1 BASIC23.78■■□□□ 1.4
RETREG3Q86VR2 ADAT3-201ENST00000329478 1620 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
RETREG3Q86VR2 ZNF470-206ENST00000601902 1640 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
RETREG3Q86VR2 DUSP8P4-201ENST00000399538 1761 ntBASIC23.78■■□□□ 1.4
RETREG3Q86VR2 CDK9-201ENST00000373264 2463 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
RETREG3Q86VR2 MYPOP-201ENST00000322217 1890 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
RETREG3Q86VR2 EI24-212ENST00000615917 1407 ntTSL 2 BASIC23.76■■□□□ 1.39
RETREG3Q86VR2 AMIGO1-201ENST00000369862 2229 ntAPPRIS P1 TSL 5 BASIC23.76■■□□□ 1.39
RETREG3Q86VR2 BICDL2-203ENST00000572449 1984 ntAPPRIS P1 TSL 5 BASIC23.76■■□□□ 1.39
RETREG3Q86VR2 AC005559.1-201ENST00000589661 871 ntBASIC23.76■■□□□ 1.39
RETREG3Q86VR2 AC092803.2-201ENST00000564287 1899 ntBASIC23.76■■□□□ 1.39
RETREG3Q86VR2 FBXL8-201ENST00000258200 1658 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
RETREG3Q86VR2 SNHG7-204ENST00000447221 2157 ntTSL 2 BASIC23.75■■□□□ 1.39
RETREG3Q86VR2 ECI1-203ENST00000562238 948 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
Retrieved 100 of 98,524 protein–RNA pairs in 35 ms