Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 ZNF639-209ENST00000496856 2033 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
CLRN1P58418 TMEM147-202ENST00000392204 935 ntTSL 2 BASIC22.4■■□□□ 1.18
CLRN1P58418 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC22.4■■□□□ 1.18
CLRN1P58418 CD6-206ENST00000452451 1782 ntAPPRIS ALT2 TSL 1 (best) BASIC22.4■■□□□ 1.18
CLRN1P58418 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC22.39■■□□□ 1.18
CLRN1P58418 ANKRD16-201ENST00000191063 1567 ntTSL 3 BASIC22.39■■□□□ 1.18
CLRN1P58418 BCAP31-201ENST00000345046 1589 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.18
CLRN1P58418 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC22.39■■□□□ 1.18
CLRN1P58418 TNIP2-201ENST00000315423 1974 ntAPPRIS P3 TSL 1 (best) BASIC22.39■■□□□ 1.17
CLRN1P58418 DCDC2C-201ENST00000399143 1476 ntAPPRIS P1 TSL 5 BASIC22.39■■□□□ 1.17
CLRN1P58418 C14orf80-203ENST00000354560 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC22.38■■□□□ 1.17
CLRN1P58418 HOMER3-202ENST00000392351 1557 ntAPPRIS P3 TSL 1 (best) BASIC22.38■■□□□ 1.17
CLRN1P58418 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
CLRN1P58418 CHML-204ENST00000638121 920 ntTSL 2 BASIC22.38■■□□□ 1.17
CLRN1P58418 SHF-208ENST00000560734 1731 ntTSL 3 BASIC22.37■■□□□ 1.17
CLRN1P58418 TSPAN3-203ENST00000424443 1530 ntTSL 2 BASIC22.37■■□□□ 1.17
CLRN1P58418 FAM120AOS-202ENST00000423591 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC22.37■■□□□ 1.17
CLRN1P58418 ZNRF2P2-203ENST00000454624 420 ntBASIC22.37■■□□□ 1.17
CLRN1P58418 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC22.37■■□□□ 1.17
CLRN1P58418 DCUN1D5-201ENST00000260247 1337 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
CLRN1P58418 FBXL8-206ENST00000519917 1460 ntAPPRIS P1 TSL 5 BASIC22.36■■□□□ 1.17
CLRN1P58418 PICK1-201ENST00000356976 2055 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
CLRN1P58418 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC22.36■■□□□ 1.17
CLRN1P58418 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC22.36■■□□□ 1.17
CLRN1P58418 IHH-201ENST00000295731 2023 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
CLRN1P58418 NPDC1-201ENST00000371600 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC22.36■■□□□ 1.17
CLRN1P58418 TMEM64-201ENST00000418210 4663 ntTSL 2 BASIC22.35■■□□□ 1.17
CLRN1P58418 PSMG1-201ENST00000331573 2154 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
CLRN1P58418 CARM1-202ENST00000344150 2722 ntAPPRIS ALT2 TSL 5 BASIC22.35■■□□□ 1.17
CLRN1P58418 TAZ-201ENST00000369776 1596 ntTSL 1 (best) BASIC22.35■■□□□ 1.17
CLRN1P58418 THRA-204ENST00000546243 1909 ntAPPRIS P1 TSL 2 BASIC22.35■■□□□ 1.17
CLRN1P58418 HDGFL1-201ENST00000510882 2174 ntAPPRIS P1 BASIC22.35■■□□□ 1.17
CLRN1P58418 F8A1-201ENST00000610495 1713 ntAPPRIS P1 BASIC22.34■■□□□ 1.17
CLRN1P58418 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC22.34■■□□□ 1.17
CLRN1P58418 PEX7-203ENST00000541292 945 ntTSL 5 BASIC22.34■■□□□ 1.17
CLRN1P58418 SETBP1-202ENST00000426838 1785 ntAPPRIS ALT2 TSL 1 (best) BASIC22.34■■□□□ 1.17
CLRN1P58418 ACAA1-220ENST00000627515 1862 ntTSL 5 BASIC22.34■■□□□ 1.17
CLRN1P58418 U2AF1-203ENST00000398137 1019 ntTSL 1 (best) BASIC22.33■■□□□ 1.17
CLRN1P58418 U2AF1L5-212ENST00000639996 1019 ntTSL 1 (best) BASIC22.33■■□□□ 1.17
CLRN1P58418 VIPR2-203ENST00000402066 1926 ntAPPRIS ALT2 TSL 5 BASIC22.32■■□□□ 1.16
CLRN1P58418 ABHD17AP4-201ENST00000411545 909 ntBASIC22.32■■□□□ 1.16
CLRN1P58418 DUX4L13-201ENST00000554103 1267 ntBASIC22.32■■□□□ 1.16
CLRN1P58418 DUX4L15-201ENST00000611059 1267 ntBASIC22.32■■□□□ 1.16
CLRN1P58418 DUX4L11-201ENST00000611504 1267 ntBASIC22.32■■□□□ 1.16
CLRN1P58418 DUX4L12-201ENST00000614593 1267 ntBASIC22.32■■□□□ 1.16
CLRN1P58418 DUX4L23-201ENST00000615195 1269 ntBASIC22.32■■□□□ 1.16
CLRN1P58418 DUX4L24-201ENST00000617576 1269 ntBASIC22.32■■□□□ 1.16
CLRN1P58418 DUX4L22-201ENST00000618238 1269 ntBASIC22.32■■□□□ 1.16
CLRN1P58418 DUX4L20-201ENST00000619712 1269 ntBASIC22.32■■□□□ 1.16
CLRN1P58418 DUX4L14-201ENST00000621227 1267 ntBASIC22.32■■□□□ 1.16
CLRN1P58418 DUX4L21-201ENST00000622058 1269 ntBASIC22.32■■□□□ 1.16
CLRN1P58418 DUX4L10-201ENST00000622460 1267 ntBASIC22.32■■□□□ 1.16
CLRN1P58418 DUX4L25-201ENST00000624915 1269 ntBASIC22.32■■□□□ 1.16
CLRN1P58418 RTN2-202ENST00000344680 2063 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
CLRN1P58418 CTSA-203ENST00000372459 1972 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
CLRN1P58418 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
CLRN1P58418 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
CLRN1P58418 CHST11-202ENST00000546689 756 ntTSL 2 BASIC22.3■■□□□ 1.16
CLRN1P58418 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
CLRN1P58418 TMEM55B-202ENST00000398020 1696 ntAPPRIS ALT1 TSL 1 (best) BASIC22.3■■□□□ 1.16
CLRN1P58418 LYPD6B-203ENST00000409642 1577 ntAPPRIS P3 TSL 1 (best) BASIC22.29■■□□□ 1.16
CLRN1P58418 NSMCE4A-201ENST00000369017 1224 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
CLRN1P58418 CTBP1-201ENST00000290921 2297 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
CLRN1P58418 AL121749.1-202ENST00000609313 2153 ntBASIC22.29■■□□□ 1.16
CLRN1P58418 PPP1R26-201ENST00000356818 4932 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
CLRN1P58418 RAD21-AS1-201ENST00000521487 2010 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
CLRN1P58418 BBC3-204ENST00000449228 1827 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
CLRN1P58418 GPR25-201ENST00000304244 1224 ntAPPRIS P1 BASIC22.27■■□□□ 1.16
CLRN1P58418 UCK1-204ENST00000372215 2167 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
CLRN1P58418 NDEL1-202ENST00000380025 2181 ntTSL 5 BASIC22.27■■□□□ 1.16
CLRN1P58418 TSPAN4-207ENST00000397411 1025 ntAPPRIS P1 TSL 2 BASIC22.27■■□□□ 1.16
CLRN1P58418 NTN3-201ENST00000293973 1986 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.15
CLRN1P58418 CPTP-201ENST00000343938 2190 ntAPPRIS P1 TSL 2 BASIC22.26■■□□□ 1.15
CLRN1P58418 NELFB-202ENST00000634710 1887 ntAPPRIS P2 TSL 1 (best) BASIC22.26■■□□□ 1.15
CLRN1P58418 SLC25A6-201ENST00000381401 2062 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
CLRN1P58418 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC22.26■■□□□ 1.15
CLRN1P58418 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
CLRN1P58418 MXRA7-202ENST00000375036 1950 ntAPPRIS ALT2 TSL 2 BASIC22.26■■□□□ 1.15
CLRN1P58418 C14orf80-205ENST00000392523 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC22.26■■□□□ 1.15
CLRN1P58418 DNAJC21-201ENST00000342382 2309 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
CLRN1P58418 RPS2-210ENST00000530225 765 ntTSL 2 BASIC22.25■■□□□ 1.15
CLRN1P58418 RNF166-209ENST00000567844 633 ntTSL 5 BASIC22.25■■□□□ 1.15
CLRN1P58418 C11orf80-210ENST00000527634 1666 ntAPPRIS ALT2 TSL 5 BASIC22.25■■□□□ 1.15
CLRN1P58418 CCND3-203ENST00000372991 2085 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
CLRN1P58418 NPB-202ENST00000573081 2154 ntAPPRIS ALT2 BASIC22.24■■□□□ 1.15
CLRN1P58418 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC22.24■■□□□ 1.15
CLRN1P58418 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC22.24■■□□□ 1.15
CLRN1P58418 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC22.24■■□□□ 1.15
CLRN1P58418 APLP1-201ENST00000221891 2495 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
CLRN1P58418 DACT2-202ENST00000366796 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC22.23■■□□□ 1.15
CLRN1P58418 C8orf58-202ENST00000409586 2021 ntAPPRIS ALT2 TSL 2 BASIC22.23■■□□□ 1.15
CLRN1P58418 ROM1-201ENST00000278833 1878 ntAPPRIS P2 TSL 1 (best) BASIC22.22■■□□□ 1.15
CLRN1P58418 NR6A1-203ENST00000416460 1898 ntAPPRIS ALT2 TSL 1 (best) BASIC22.22■■□□□ 1.15
CLRN1P58418 SENP3-201ENST00000321337 2611 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
CLRN1P58418 RAB3IL1-202ENST00000394836 2284 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
CLRN1P58418 AL121987.2-201ENST00000418602 1578 ntTSL 2 BASIC22.22■■□□□ 1.15
CLRN1P58418 AC009690.3-201ENST00000569547 1902 ntAPPRIS P1 TSL 2 BASIC22.22■■□□□ 1.15
CLRN1P58418 AGPS-202ENST00000409888 815 ntTSL 4 BASIC22.22■■□□□ 1.15
CLRN1P58418 CCNG2-201ENST00000316355 5526 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
CLRN1P58418 ANKRD53-203ENST00000441349 1797 ntTSL 5 BASIC22.22■■□□□ 1.15
Retrieved 100 of 98,524 protein–RNA pairs in 94.3 ms