Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 ABL2-203ENST00000392043 2140 ntTSL 1 (best) BASIC26.05■■□□□ 1.76
LIG3P49916 SMDT1-201ENST00000331479 1567 ntAPPRIS P1 TSL 1 (best) BASIC26.05■■□□□ 1.76
LIG3P49916 RPUSD1-207ENST00000565809 1918 ntTSL 2 BASIC26.04■■□□□ 1.76
LIG3P49916 GPR150-201ENST00000380007 2065 ntAPPRIS P1 BASIC26.04■■□□□ 1.76
LIG3P49916 SH3GL1-201ENST00000269886 2516 ntAPPRIS P1 TSL 1 (best) BASIC26.04■■□□□ 1.76
LIG3P49916 FGF19-201ENST00000294312 2447 ntAPPRIS P1 TSL 1 (best) BASIC26.03■■□□□ 1.76
LIG3P49916 SPG21-201ENST00000204566 1822 ntAPPRIS P1 TSL 1 (best) BASIC26.03■■□□□ 1.76
LIG3P49916 OSBP-201ENST00000263847 5083 ntAPPRIS P1 TSL 1 (best) BASIC26.03■■□□□ 1.76
LIG3P49916 HNRNPAB-205ENST00000506259 1674 ntAPPRIS ALT2 TSL 1 (best) BASIC26.03■■□□□ 1.76
LIG3P49916 TCAM1P-201ENST00000463377 452 ntTSL 3 BASIC26.02■■□□□ 1.76
LIG3P49916 FAM189B-210ENST00000621094 1335 ntTSL 1 (best) BASIC26.02■■□□□ 1.76
LIG3P49916 AC127502.1-201ENST00000399971 1502 ntBASIC26.02■■□□□ 1.76
LIG3P49916 GRK6-206ENST00000507633 1660 ntTSL 5 BASIC26.02■■□□□ 1.76
LIG3P49916 HNRNPAB-202ENST00000358344 1796 ntAPPRIS P4 TSL 1 (best) BASIC26.02■■□□□ 1.76
LIG3P49916 SPIRE1-203ENST00000410092 5533 ntAPPRIS P3 TSL 1 (best) BASIC26.01■■□□□ 1.75
LIG3P49916 H2AFV-204ENST00000350771 687 ntTSL 2 BASIC26.01■■□□□ 1.75
LIG3P49916 OXSR1-203ENST00000446845 1908 ntTSL 5 BASIC26.01■■□□□ 1.75
LIG3P49916 CALM3-209ENST00000597743 577 ntTSL 4 BASIC26.01■■□□□ 1.75
LIG3P49916 LINC01971-201ENST00000617888 1048 ntBASIC26.01■■□□□ 1.75
LIG3P49916 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC26.01■■□□□ 1.75
LIG3P49916 ZFPM1-201ENST00000319555 5380 ntAPPRIS P1 TSL 1 (best) BASIC26.01■■□□□ 1.75
LIG3P49916 DVL1-201ENST00000378888 3239 ntAPPRIS ALT1 TSL 5 BASIC26.01■■□□□ 1.75
LIG3P49916 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC26■■□□□ 1.75
LIG3P49916 PSMG1-201ENST00000331573 2154 ntAPPRIS P1 TSL 1 (best) BASIC26■■□□□ 1.75
LIG3P49916 COQ2-202ENST00000311469 1641 ntAPPRIS P2 TSL 1 (best) BASIC25.99■■□□□ 1.75
LIG3P49916 TAZ-213ENST00000601016 1889 ntTSL 1 (best) BASIC25.99■■□□□ 1.75
LIG3P49916 MKNK2-202ENST00000309340 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC25.99■■□□□ 1.75
LIG3P49916 MBOAT7-205ENST00000431666 2471 ntTSL 1 (best) BASIC25.98■■□□□ 1.75
LIG3P49916 ZDHHC14-204ENST00000414563 3134 ntTSL 1 (best) BASIC25.98■■□□□ 1.75
LIG3P49916 AMIGO1-201ENST00000369862 2229 ntAPPRIS P1 TSL 5 BASIC25.98■■□□□ 1.75
LIG3P49916 JMJD8-202ENST00000562111 823 ntTSL 2 BASIC25.97■■□□□ 1.75
LIG3P49916 PCSK6-218ENST00000619160 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC25.97■■□□□ 1.75
LIG3P49916 DNAJB2-202ENST00000392086 1946 ntAPPRIS P1 TSL 2 BASIC25.96■■□□□ 1.75
LIG3P49916 DUX4L11-201ENST00000611504 1267 ntBASIC25.96■■□□□ 1.75
LIG3P49916 DUX4L12-201ENST00000614593 1267 ntBASIC25.96■■□□□ 1.75
LIG3P49916 DUX4L14-201ENST00000621227 1267 ntBASIC25.96■■□□□ 1.75
LIG3P49916 LINC00273-201ENST00000539813 1452 ntBASIC25.96■■□□□ 1.75
LIG3P49916 RNF166-209ENST00000567844 633 ntTSL 5 BASIC25.95■■□□□ 1.74
LIG3P49916 SLC25A6-201ENST00000381401 2062 ntAPPRIS P1 TSL 1 (best) BASIC25.95■■□□□ 1.74
LIG3P49916 ACSS1-203ENST00000432802 2438 ntTSL 2 BASIC25.95■■□□□ 1.74
LIG3P49916 GKAP1-202ENST00000376365 1511 ntTSL 1 (best) BASIC25.94■■□□□ 1.74
LIG3P49916 LINC02323-201ENST00000559946 1603 ntTSL 3 BASIC25.94■■□□□ 1.74
LIG3P49916 TRIOBP-203ENST00000403663 2324 ntAPPRIS ALT2 TSL 1 (best) BASIC25.93■■□□□ 1.74
LIG3P49916 CAPN10-204ENST00000354082 1999 ntTSL 1 (best) BASIC25.93■■□□□ 1.74
LIG3P49916 TMEM251-202ENST00000415050 1303 ntTSL 2 BASIC25.92■■□□□ 1.74
LIG3P49916 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC25.92■■□□□ 1.74
LIG3P49916 COMMD7-201ENST00000278980 1900 ntAPPRIS P3 TSL 1 (best) BASIC25.92■■□□□ 1.74
LIG3P49916 RUNX2-205ENST00000465038 1770 ntAPPRIS P4 TSL 5 BASIC25.92■■□□□ 1.74
LIG3P49916 CLPTM1L-201ENST00000320895 2500 ntAPPRIS P1 TSL 1 (best) BASIC25.91■■□□□ 1.74
LIG3P49916 MSANTD2-201ENST00000239614 2495 ntTSL 2 BASIC25.91■■□□□ 1.74
LIG3P49916 TSPOAP1-AS1-205ENST00000580022 2337 ntTSL 2 BASIC25.91■■□□□ 1.74
LIG3P49916 SLC15A3-201ENST00000227880 2115 ntAPPRIS P1 TSL 1 (best) BASIC25.91■■□□□ 1.74
LIG3P49916 RFLNA-205ENST00000546355 2354 ntAPPRIS ALT1 TSL 1 (best) BASIC25.91■■□□□ 1.74
LIG3P49916 PRR35-201ENST00000409413 2216 ntAPPRIS P1 TSL 1 (best) BASIC25.91■■□□□ 1.74
LIG3P49916 SLC16A3-214ENST00000582743 2002 ntAPPRIS P1 TSL 1 (best) BASIC25.9■■□□□ 1.74
LIG3P49916 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC25.9■■□□□ 1.74
LIG3P49916 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC25.9■■□□□ 1.74
LIG3P49916 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC25.9■■□□□ 1.74
LIG3P49916 KLC1-225ENST00000557575 2188 ntTSL 5 BASIC25.89■■□□□ 1.74
LIG3P49916 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC25.89■■□□□ 1.74
LIG3P49916 HLA-V-202ENST00000446817 847 ntBASIC25.89■■□□□ 1.74
LIG3P49916 MACF1-219ENST00000484793 834 ntTSL 2 BASIC25.89■■□□□ 1.74
LIG3P49916 MAZ-208ENST00000563402 1461 ntTSL 5 BASIC25.89■■□□□ 1.73
LIG3P49916 MAZ-210ENST00000566906 1455 ntTSL 5 BASIC25.89■■□□□ 1.73
LIG3P49916 FOXA3-201ENST00000302177 1989 ntAPPRIS P1 TSL 1 (best) BASIC25.89■■□□□ 1.73
LIG3P49916 NPC2-207ENST00000555619 1035 ntAPPRIS P2 TSL 1 (best) BASIC25.88■■□□□ 1.73
LIG3P49916 MBP-237ENST00000579129 1052 ntTSL 5 BASIC25.88■■□□□ 1.73
LIG3P49916 LMTK3-201ENST00000270238 4972 ntAPPRIS P2 TSL 1 (best) BASIC25.88■■□□□ 1.73
LIG3P49916 C1QTNF8-201ENST00000328449 1627 ntAPPRIS P1 TSL 5 BASIC25.88■■□□□ 1.73
LIG3P49916 KLF3-AS1-202ENST00000440181 2368 ntTSL 2 BASIC25.88■■□□□ 1.73
LIG3P49916 HDGFL1-201ENST00000510882 2174 ntAPPRIS P1 BASIC25.88■■□□□ 1.73
LIG3P49916 MIR3648-2-201ENST00000581792 180 ntBASIC25.87■■□□□ 1.73
LIG3P49916 MIR3648-1-201ENST00000615959 180 ntBASIC25.87■■□□□ 1.73
LIG3P49916 LTK-203ENST00000453182 2412 ntTSL 2 BASIC25.87■■□□□ 1.73
LIG3P49916 CFAP73-201ENST00000335621 1514 ntAPPRIS P1 TSL 5 BASIC25.87■■□□□ 1.73
LIG3P49916 CPLX1-203ENST00000505203 2011 ntTSL 2 BASIC25.87■■□□□ 1.73
LIG3P49916 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC25.86■■□□□ 1.73
LIG3P49916 PDIA6-201ENST00000272227 2338 ntAPPRIS P3 TSL 1 (best) BASIC25.86■■□□□ 1.73
LIG3P49916 BCL7C-201ENST00000215115 1740 ntAPPRIS P1 TSL 1 (best) BASIC25.85■■□□□ 1.73
LIG3P49916 GNB1-210ENST00000615252 3048 ntTSL 5 BASIC25.85■■□□□ 1.73
LIG3P49916 MORF4L1-203ENST00000426013 1880 ntAPPRIS P1 TSL 1 (best) BASIC25.85■■□□□ 1.73
LIG3P49916 AGPS-202ENST00000409888 815 ntTSL 4 BASIC25.85■■□□□ 1.73
LIG3P49916 GDI1-215ENST00000630693 786 ntTSL 4 BASIC25.85■■□□□ 1.73
LIG3P49916 NDEL1-202ENST00000380025 2181 ntTSL 5 BASIC25.85■■□□□ 1.73
LIG3P49916 KANSL1L-207ENST00000452086 2334 ntTSL 1 (best) BASIC25.85■■□□□ 1.73
LIG3P49916 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC25.84■■□□□ 1.73
LIG3P49916 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC25.84■■□□□ 1.73
LIG3P49916 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC25.84■■□□□ 1.73
LIG3P49916 CR559946.2-201ENST00000623684 991 ntBASIC25.84■■□□□ 1.73
LIG3P49916 CCDC160-202ENST00000517294 1790 ntAPPRIS P1 TSL 5 BASIC25.84■■□□□ 1.73
LIG3P49916 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC25.84■■□□□ 1.73
LIG3P49916 NPAS3-206ENST00000548645 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC25.84■■□□□ 1.73
LIG3P49916 PICALM-224ENST00000630913 2261 ntTSL 5 BASIC25.83■■□□□ 1.73
LIG3P49916 DUX4L13-201ENST00000554103 1267 ntBASIC25.83■■□□□ 1.73
LIG3P49916 AC016575.1-201ENST00000607026 382 ntBASIC25.83■■□□□ 1.73
LIG3P49916 DUX4L15-201ENST00000611059 1267 ntBASIC25.83■■□□□ 1.73
LIG3P49916 DUX4L23-201ENST00000615195 1269 ntBASIC25.83■■□□□ 1.73
LIG3P49916 DUX4L24-201ENST00000617576 1269 ntBASIC25.83■■□□□ 1.73
LIG3P49916 DUX4L22-201ENST00000618238 1269 ntBASIC25.83■■□□□ 1.73
LIG3P49916 DUX4L20-201ENST00000619712 1269 ntBASIC25.83■■□□□ 1.73
Retrieved 100 of 98,524 protein–RNA pairs in 134.2 ms