Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 AC110285.7-201ENST00000624417 1536 ntBASIC24.31■■□□□ 1.48
HNF4AP41235 DDAH2-212ENST00000375789 1688 ntAPPRIS P1 TSL 2 BASIC24.31■■□□□ 1.48
HNF4AP41235 DDAH2-213ENST00000375792 1688 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
HNF4AP41235 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC24.31■■□□□ 1.48
HNF4AP41235 TXNL4A-208ENST00000588162 752 ntTSL 2 BASIC24.31■■□□□ 1.48
HNF4AP41235 DUX4L11-201ENST00000611504 1267 ntBASIC24.31■■□□□ 1.48
HNF4AP41235 DUX4L12-201ENST00000614593 1267 ntBASIC24.31■■□□□ 1.48
HNF4AP41235 DUX4L14-201ENST00000621227 1267 ntBASIC24.31■■□□□ 1.48
HNF4AP41235 PSMG1-201ENST00000331573 2154 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
HNF4AP41235 C14orf80-203ENST00000354560 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC24.3■■□□□ 1.48
HNF4AP41235 CD6-206ENST00000452451 1782 ntAPPRIS ALT2 TSL 1 (best) BASIC24.3■■□□□ 1.48
HNF4AP41235 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC24.3■■□□□ 1.48
HNF4AP41235 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC24.3■■□□□ 1.48
HNF4AP41235 SSBP3-202ENST00000357475 1533 ntTSL 1 (best) BASIC24.3■■□□□ 1.48
HNF4AP41235 RTN2-202ENST00000344680 2063 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
HNF4AP41235 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
HNF4AP41235 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC24.29■■□□□ 1.48
HNF4AP41235 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC24.29■■□□□ 1.48
HNF4AP41235 CHML-204ENST00000638121 920 ntTSL 2 BASIC24.29■■□□□ 1.48
HNF4AP41235 VIPR2-203ENST00000402066 1926 ntAPPRIS ALT2 TSL 5 BASIC24.29■■□□□ 1.48
HNF4AP41235 HDGFL1-201ENST00000510882 2174 ntAPPRIS P1 BASIC24.29■■□□□ 1.48
HNF4AP41235 MAGI2-215ENST00000628980 6212 ntTSL 5 BASIC24.28■■□□□ 1.48
HNF4AP41235 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
HNF4AP41235 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC24.28■■□□□ 1.48
HNF4AP41235 DCUN1D5-201ENST00000260247 1337 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
HNF4AP41235 ROM1-201ENST00000278833 1878 ntAPPRIS P2 TSL 1 (best) BASIC24.28■■□□□ 1.48
HNF4AP41235 FBXL8-206ENST00000519917 1460 ntAPPRIS P1 TSL 5 BASIC24.27■■□□□ 1.48
HNF4AP41235 PVT1-219ENST00000523427 938 ntTSL 3 BASIC24.27■■□□□ 1.48
HNF4AP41235 RNF166-209ENST00000567844 633 ntTSL 5 BASIC24.27■■□□□ 1.48
HNF4AP41235 AL121749.1-202ENST00000609313 2153 ntBASIC24.27■■□□□ 1.48
HNF4AP41235 ACAA1-220ENST00000627515 1862 ntTSL 5 BASIC24.26■■□□□ 1.47
HNF4AP41235 PEX7-203ENST00000541292 945 ntTSL 5 BASIC24.26■■□□□ 1.47
HNF4AP41235 C11orf80-210ENST00000527634 1666 ntAPPRIS ALT2 TSL 5 BASIC24.26■■□□□ 1.47
HNF4AP41235 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
HNF4AP41235 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC24.25■■□□□ 1.47
HNF4AP41235 CTSA-203ENST00000372459 1972 ntTSL 1 (best) BASIC24.25■■□□□ 1.47
HNF4AP41235 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
HNF4AP41235 DPY19L1-209ENST00000638088 5075 ntAPPRIS ALT2 TSL 5 BASIC24.24■■□□□ 1.47
HNF4AP41235 MXI1-201ENST00000239007 2424 ntAPPRIS ALT1 TSL 1 (best) BASIC24.24■■□□□ 1.47
HNF4AP41235 TMEM147-202ENST00000392204 935 ntTSL 2 BASIC24.24■■□□□ 1.47
HNF4AP41235 DUX4L13-201ENST00000554103 1267 ntBASIC24.24■■□□□ 1.47
HNF4AP41235 DUX4L15-201ENST00000611059 1267 ntBASIC24.24■■□□□ 1.47
HNF4AP41235 DUX4L23-201ENST00000615195 1269 ntBASIC24.24■■□□□ 1.47
HNF4AP41235 DUX4L24-201ENST00000617576 1269 ntBASIC24.24■■□□□ 1.47
HNF4AP41235 DUX4L22-201ENST00000618238 1269 ntBASIC24.24■■□□□ 1.47
HNF4AP41235 DUX4L20-201ENST00000619712 1269 ntBASIC24.24■■□□□ 1.47
HNF4AP41235 DUX4L21-201ENST00000622058 1269 ntBASIC24.24■■□□□ 1.47
HNF4AP41235 DUX4L10-201ENST00000622460 1267 ntBASIC24.24■■□□□ 1.47
HNF4AP41235 DUX4L25-201ENST00000624915 1269 ntBASIC24.24■■□□□ 1.47
HNF4AP41235 DCDC2C-201ENST00000399143 1476 ntAPPRIS P1 TSL 5 BASIC24.24■■□□□ 1.47
HNF4AP41235 TAZ-201ENST00000369776 1596 ntTSL 1 (best) BASIC24.24■■□□□ 1.47
HNF4AP41235 HOMER3-202ENST00000392351 1557 ntAPPRIS P3 TSL 1 (best) BASIC24.24■■□□□ 1.47
HNF4AP41235 F8A1-201ENST00000610495 1713 ntAPPRIS P1 BASIC24.24■■□□□ 1.47
HNF4AP41235 SETBP1-202ENST00000426838 1785 ntAPPRIS ALT2 TSL 1 (best) BASIC24.24■■□□□ 1.47
HNF4AP41235 SLC25A6-201ENST00000381401 2062 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
HNF4AP41235 HAND2-201ENST00000359562 2780 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
HNF4AP41235 ANKRD16-201ENST00000191063 1567 ntTSL 3 BASIC24.23■■□□□ 1.47
HNF4AP41235 LYPD6B-203ENST00000409642 1577 ntAPPRIS P3 TSL 1 (best) BASIC24.23■■□□□ 1.47
HNF4AP41235 ZNF219-201ENST00000360947 3071 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
HNF4AP41235 CTBP1-201ENST00000290921 2297 ntTSL 1 (best) BASIC24.22■■□□□ 1.47
HNF4AP41235 NPB-202ENST00000573081 2154 ntAPPRIS ALT2 BASIC24.22■■□□□ 1.47
HNF4AP41235 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC24.22■■□□□ 1.47
HNF4AP41235 NDEL1-202ENST00000380025 2181 ntTSL 5 BASIC24.22■■□□□ 1.47
HNF4AP41235 RAD21-AS1-201ENST00000521487 2010 ntTSL 1 (best) BASIC24.22■■□□□ 1.47
HNF4AP41235 FADD-201ENST00000301838 1841 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
HNF4AP41235 CARM1-202ENST00000344150 2722 ntAPPRIS ALT2 TSL 5 BASIC24.21■■□□□ 1.47
HNF4AP41235 SENP3-201ENST00000321337 2611 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
HNF4AP41235 CPTP-201ENST00000343938 2190 ntAPPRIS P1 TSL 2 BASIC24.21■■□□□ 1.47
HNF4AP41235 UCK1-204ENST00000372215 2167 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
HNF4AP41235 GPR25-201ENST00000304244 1224 ntAPPRIS P1 BASIC24.21■■□□□ 1.47
HNF4AP41235 CHST11-202ENST00000546689 756 ntTSL 2 BASIC24.21■■□□□ 1.47
HNF4AP41235 MXRA7-202ENST00000375036 1950 ntAPPRIS ALT2 TSL 2 BASIC24.21■■□□□ 1.47
HNF4AP41235 NAPA-201ENST00000263354 1839 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
HNF4AP41235 NR6A1-203ENST00000416460 1898 ntAPPRIS ALT2 TSL 1 (best) BASIC24.2■■□□□ 1.46
HNF4AP41235 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC24.2■■□□□ 1.46
HNF4AP41235 RAB3IL1-202ENST00000394836 2284 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
HNF4AP41235 C14orf80-205ENST00000392523 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC24.19■■□□□ 1.46
HNF4AP41235 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC24.19■■□□□ 1.46
HNF4AP41235 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC24.19■■□□□ 1.46
HNF4AP41235 NELFB-202ENST00000634710 1887 ntAPPRIS P2 TSL 1 (best) BASIC24.19■■□□□ 1.46
HNF4AP41235 TSPAN3-203ENST00000424443 1530 ntTSL 2 BASIC24.19■■□□□ 1.46
HNF4AP41235 BBC3-204ENST00000449228 1827 ntTSL 1 (best) BASIC24.19■■□□□ 1.46
HNF4AP41235 NSMCE4A-201ENST00000369017 1224 ntTSL 1 (best) BASIC24.18■■□□□ 1.46
HNF4AP41235 RAPGEF1-203ENST00000372195 6256 ntTSL 1 (best) BASIC24.17■■□□□ 1.46
HNF4AP41235 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC24.17■■□□□ 1.46
HNF4AP41235 DACT2-202ENST00000366796 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC24.17■■□□□ 1.46
HNF4AP41235 ING2-201ENST00000302327 1189 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
HNF4AP41235 GNPTAB-201ENST00000299314 5701 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
HNF4AP41235 RNF19B-201ENST00000235150 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC24.16■■□□□ 1.46
HNF4AP41235 ZNF768-201ENST00000380412 2315 ntAPPRIS P2 TSL 1 (best) BASIC24.16■■□□□ 1.46
HNF4AP41235 U2AF1-203ENST00000398137 1019 ntTSL 1 (best) BASIC24.16■■□□□ 1.46
HNF4AP41235 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC24.16■■□□□ 1.46
HNF4AP41235 CR559946.2-201ENST00000623684 991 ntBASIC24.16■■□□□ 1.46
HNF4AP41235 U2AF1L5-212ENST00000639996 1019 ntTSL 1 (best) BASIC24.16■■□□□ 1.46
HNF4AP41235 NTN3-201ENST00000293973 1986 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
HNF4AP41235 HES6-205ENST00000409356 528 ntTSL 2 BASIC24.15■■□□□ 1.46
HNF4AP41235 GDI1-215ENST00000630693 786 ntTSL 4 BASIC24.15■■□□□ 1.46
HNF4AP41235 ANKRD53-203ENST00000441349 1797 ntTSL 5 BASIC24.15■■□□□ 1.46
HNF4AP41235 PHF23-205ENST00000571362 1768 ntTSL 2 BASIC24.15■■□□□ 1.46
HNF4AP41235 C8orf58-202ENST00000409586 2021 ntAPPRIS ALT2 TSL 2 BASIC24.15■■□□□ 1.46
Retrieved 100 of 98,524 protein–RNA pairs in 215.2 ms