RNA–Protein interactions for RNA: YPL042C

SSN3, Transcript of Cyclin-dependent protein kinase, yeastyeast

Gene SSN3, Length 1,668 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SSN3YPL042C SGS1P35187 1447 aa16.98■□□□□ 0.31
SSN3YPL042C INO80P53115 1489 aa16.77■□□□□ 0.27
SSN3YPL042C MON2P48563 1636 aaPredicted RBP16.65■□□□□ 0.26
SSN3YPL042C TCB3Q03640 1545 aaKnown RBP16.64■□□□□ 0.25
SSN3YPL042C TY1B-DR4Q07793 1604 aa16.47■□□□□ 0.23
SSN3YPL042C RQC2Q12532 1038 aaKnown RBP16.21■□□□□ 0.19
SSN3YPL042C SWR1Q05471 1514 aa16.2■□□□□ 0.18
SSN3YPL042C SPA2P23201 1466 aaKnown RBP16.11■□□□□ 0.17
SSN3YPL042C HSL1P34244 1518 aa16.1■□□□□ 0.17
SSN3YPL042C SSN2P38931 1420 aa16.1■□□□□ 0.17
SSN3YPL042C SPT6P23615 1451 aaKnown RBP16.05■□□□□ 0.16
SSN3YPL042C DNA2P38859 1522 aa15.81■□□□□ 0.12
SSN3YPL042C HIR3P47171 1648 aa15.79■□□□□ 0.12
SSN3YPL042C KOG1P38873 1557 aa15.74■□□□□ 0.11
SSN3YPL042C XRN1P22147 1528 aaKnown RBP15.63■□□□□ 0.09
SSN3YPL042C DRS1P32892 752 aaKnown RBP15.54■□□□□ 0.08
SSN3YPL042C TAF7Q05021 590 aa15.41■□□□□ 0.06
SSN3YPL042C REV3P14284 1504 aa15.41■□□□□ 0.06
SSN3YPL042C THO2P53552 1597 aaKnown RBP15.37■□□□□ 0.05
SSN3YPL042C BUD4P47136 1447 aa15.34■□□□□ 0.05
SSN3YPL042C SIN3P22579 1536 aa15.32■□□□□ 0.04
SSN3YPL042C ECM5Q03214 1411 aa15.3■□□□□ 0.04
SSN3YPL042C SSK2P53599 1579 aa15.21■□□□□ 0.03
SSN3YPL042C TAF2P23255 1407 aa15.16■□□□□ 0.02
SSN3YPL042C ATG2P53855 1592 aa15.15■□□□□ 0.02
SSN3YPL042C MDS3P53094 1487 aa15.09■□□□□ 0.01
SSN3YPL042C ESP1Q03018 1630 aa15.07■□□□□ 0
SSN3YPL042C PEP1P32319 1579 aa15.07■□□□□ 0
SSN3YPL042C TFA1P36100 482 aa15.05■□□□□ -0
SSN3YPL042C MYO2P19524 1574 aaKnown RBP14.99□□□□□ -0.01
SSN3YPL042C SKI3P17883 1432 aaKnown RBP14.98□□□□□ -0.01
SSN3YPL042C BFR2Q06631 534 aaKnown RBP14.9□□□□□ -0.02
SSN3YPL042C YPK9Q12697 1472 aa14.88□□□□□ -0.03
SSN3YPL042C SCC2Q04002 1493 aa14.76□□□□□ -0.05
SSN3YPL042C POL1P13382 1468 aa14.71□□□□□ -0.05
SSN3YPL042C RSE1Q04693 1361 aaKnown RBP14.7□□□□□ -0.06
SSN3YPL042C RPO31P04051 1460 aa14.69□□□□□ -0.06
SSN3YPL042C UFD4P33202 1483 aa14.67□□□□□ -0.06
SSN3YPL042C BPT1P14772 1559 aa14.61□□□□□ -0.07
SSN3YPL042C STU1P38198 1513 aa14.61□□□□□ -0.07
SSN3YPL042C RKR1Q04781 1562 aa14.59□□□□□ -0.07
SSN3YPL042C YCF1P39109 1515 aaKnown RBP14.57□□□□□ -0.08
SSN3YPL042C TOP2P06786 1428 aaKnown RBP14.55□□□□□ -0.08
SSN3YPL042C YOR1P53049 1477 aa14.52□□□□□ -0.08
SSN3YPL042C TY2B-LR1P0C2J3 1770 aa14.52□□□□□ -0.09
SSN3YPL042C TY2B-FP0CX63 1770 aa14.52□□□□□ -0.09
SSN3YPL042C TY2B-GR2P0CX64 1770 aa14.52□□□□□ -0.09
SSN3YPL042C TY2B-CP25384 1770 aa14.52□□□□□ -0.09
SSN3YPL042C TY2B-DR2Q03494 1770 aa14.52□□□□□ -0.09
SSN3YPL042C TY1B-DR1Q03855 1755 aa14.52□□□□□ -0.09
SSN3YPL042C TY2B-DR3Q07791 1770 aaKnown RBP14.52□□□□□ -0.09
SSN3YPL042C TY2B-OR1Q12113 1770 aa14.52□□□□□ -0.09
SSN3YPL042C TY2B-DR1Q12472 1770 aa14.52□□□□□ -0.09
SSN3YPL042C TY2B-OR2Q12501 1770 aa14.52□□□□□ -0.09
SSN3YPL042C SMC4Q12267 1418 aa14.45□□□□□ -0.1
SSN3YPL042C YTA7P40340 1379 aa14.44□□□□□ -0.1
SSN3YPL042C TY1B-DR3Q99231 1755 aa14.41□□□□□ -0.1
SSN3YPL042C CHD1P32657 1468 aa14.4□□□□□ -0.1
SSN3YPL042C TY2B-BQ12491 1770 aa14.37□□□□□ -0.11
SSN3YPL042C MYO4P32492 1471 aa14.35□□□□□ -0.11
SSN3YPL042C TY1B-BRQ12193 1756 aa14.34□□□□□ -0.11
SSN3YPL042C TY1B-GR3Q12316 1755 aa14.34□□□□□ -0.11
SSN3YPL042C TY1B-ORQ92393 1755 aa14.34□□□□□ -0.11
SSN3YPL042C CDC25P04821 1589 aa14.33□□□□□ -0.12
SSN3YPL042C MMS22Q06164 1454 aa14.32□□□□□ -0.12
SSN3YPL042C MTC1P47018 478 aaKnown RBP14.31□□□□□ -0.12
SSN3YPL042C TY1B-HO13535 1793 aa14.3□□□□□ -0.12
SSN3YPL042C TY1B-DR5P0C2I2 1755 aa14.3□□□□□ -0.12
SSN3YPL042C TY1B-DR6P0C2I3 1755 aa14.3□□□□□ -0.12
SSN3YPL042C TY1B-LR2P0C2I5 1755 aa14.3□□□□□ -0.12
SSN3YPL042C TY1B-LR3P0C2I6 1755 aaKnown RBP14.3□□□□□ -0.12
SSN3YPL042C TY1B-PR1P0C2I9 1755 aaKnown RBP14.3□□□□□ -0.12
SSN3YPL042C TY1B-PR2P0C2J0 1756 aa14.3□□□□□ -0.12
SSN3YPL042C TY1B-PR3P0C2J1 1755 aaKnown RBP14.3□□□□□ -0.12
SSN3YPL042C TY1B-JR1P47098 1755 aa14.3□□□□□ -0.12
SSN3YPL042C TY1B-ML2Q03434 1755 aaKnown RBP14.3□□□□□ -0.12
SSN3YPL042C TY1B-ER1Q03612 1755 aa14.3□□□□□ -0.12
SSN3YPL042C TY1B-ML1Q04711 1755 aaKnown RBP14.3□□□□□ -0.12
SSN3YPL042C TY1B-GR2Q12269 1755 aa14.3□□□□□ -0.12
SSN3YPL042C TY1B-OLQ12273 1755 aa14.3□□□□□ -0.12
SSN3YPL042C TY1B-PLQ12414 1755 aaKnown RBP14.3□□□□□ -0.12
SSN3YPL042C PAN1P32521 1480 aa14.23□□□□□ -0.13
SSN3YPL042C SPP41P38904 1435 aa14.23□□□□□ -0.13
SSN3YPL042C URN1Q06525 465 aaKnown RBP14.23□□□□□ -0.13
SSN3YPL042C ESC1Q03661 1658 aaKnown RBP14.15□□□□□ -0.14
SSN3YPL042C DNF1P32660 1571 aa14.13□□□□□ -0.15
SSN3YPL042C TSC11P40061 1430 aa14.13□□□□□ -0.15
SSN3YPL042C SNQ2P32568 1501 aaKnown RBP14.12□□□□□ -0.15
SSN3YPL042C VTH1P40438 1549 aa14.12□□□□□ -0.15
SSN3YPL042C VTH2P40890 1549 aa14.12□□□□□ -0.15
SSN3YPL042C SAS10Q12136 610 aaPredicted RBP14.1□□□□□ -0.15
SSN3YPL042C RPA190P10964 1664 aaKnown RBP14.07□□□□□ -0.16
SSN3YPL042C STH1P32597 1359 aa14.05□□□□□ -0.16
SSN3YPL042C TY1B-JR2P47100 1755 aaKnown RBP14.05□□□□□ -0.16
SSN3YPL042C TY1B-ER2Q03619 1755 aa14.05□□□□□ -0.16
SSN3YPL042C TY1B-MR1Q04214 1755 aa14.05□□□□□ -0.16
SSN3YPL042C TY1B-MR2Q04670 1755 aaKnown RBP14.05□□□□□ -0.16
SSN3YPL042C TY1B-LR1Q12088 1755 aaKnown RBP14.05□□□□□ -0.16
SSN3YPL042C TY1B-NL1Q12112 1755 aa14.05□□□□□ -0.16
SSN3YPL042C TY1B-GR1Q12141 1755 aa14.05□□□□□ -0.16
Retrieved 100 of 5,963 RNA–protein pairs in 17 ms