RNA–Protein interactions for RNA: YOR054C

VHS3, Transcript of Negative regulatory subunit of protein phosphatase 1 Ppz1p, yeastyeast

Gene VHS3, Length 2,025 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
VHS3YOR054C DRS1P32892 752 aaKnown RBP7.52□□□□□ -1.2
VHS3YOR054C MON2P48563 1636 aaPredicted RBP7.15□□□□□ -1.27
VHS3YOR054C INO80P53115 1489 aa7.06□□□□□ -1.28
VHS3YOR054C MTC1P47018 478 aaKnown RBP7.01□□□□□ -1.29
VHS3YOR054C FAP1P53971 965 aa6.98□□□□□ -1.29
VHS3YOR054C DNA2P38859 1522 aa6.73□□□□□ -1.33
VHS3YOR054C KOG1P38873 1557 aa6.7□□□□□ -1.34
VHS3YOR054C BFR2Q06631 534 aaKnown RBP6.7□□□□□ -1.34
VHS3YOR054C SWR1Q05471 1514 aa6.69□□□□□ -1.34
VHS3YOR054C PRY3P47033 881 aa6.62□□□□□ -1.35
VHS3YOR054C TY1B-DR4Q07793 1604 aa6.61□□□□□ -1.35
VHS3YOR054C TCB3Q03640 1545 aaKnown RBP6.6□□□□□ -1.35
VHS3YOR054C TFA1P36100 482 aa6.59□□□□□ -1.35
VHS3YOR054C RSE1Q04693 1361 aaKnown RBP6.56□□□□□ -1.36
VHS3YOR054C HSL1P34244 1518 aa6.29□□□□□ -1.4
VHS3YOR054C SPA2P23201 1466 aaKnown RBP6.29□□□□□ -1.4
VHS3YOR054C SPT6P23615 1451 aaKnown RBP6.28□□□□□ -1.4
VHS3YOR054C SGS1P35187 1447 aa6.27□□□□□ -1.41
VHS3YOR054C AVT3P36062 692 aa6.26□□□□□ -1.41
VHS3YOR054C DIP2Q12220 943 aaPredicted RBP6.24□□□□□ -1.41
VHS3YOR054C THO2P53552 1597 aaKnown RBP6.23□□□□□ -1.41
VHS3YOR054C ECM5Q03214 1411 aa6.17□□□□□ -1.42
VHS3YOR054C HAA1Q12753 694 aaKnown RBP6.16□□□□□ -1.42
VHS3YOR054C BUD4P47136 1447 aa6.16□□□□□ -1.42
VHS3YOR054C HIR3P47171 1648 aa6.14□□□□□ -1.43
VHS3YOR054C RQC2Q12532 1038 aaKnown RBP6.13□□□□□ -1.43
VHS3YOR054C MDS3P53094 1487 aa6.12□□□□□ -1.43
VHS3YOR054C YCK3P39962 524 aa6.09□□□□□ -1.43
VHS3YOR054C REV3P14284 1504 aa6.07□□□□□ -1.44
VHS3YOR054C PEP1P32319 1579 aa6.04□□□□□ -1.44
VHS3YOR054C NOP2P40991 618 aaKnown RBP6.02□□□□□ -1.45
VHS3YOR054C BPT1P14772 1559 aa6□□□□□ -1.45
VHS3YOR054C ATG2P53855 1592 aa5.98□□□□□ -1.45
VHS3YOR054C AAD16Q02895 342 aa5.98□□□□□ -1.45
VHS3YOR054C XRN1P22147 1528 aaKnown RBP5.96□□□□□ -1.45
VHS3YOR054C SSK2P53599 1579 aa5.94□□□□□ -1.46
VHS3YOR054C YCF1P39109 1515 aaKnown RBP5.9□□□□□ -1.47
VHS3YOR054C SIN3P22579 1536 aa5.85□□□□□ -1.47
VHS3YOR054C NSR1P27476 414 aaKnown RBP RIP-Chip data5.84□□□□□ -1.47not detected
VHS3YOR054C MIF2P35201 549 aa5.84□□□□□ -1.48
VHS3YOR054C SKI3P17883 1432 aaKnown RBP5.82□□□□□ -1.48
VHS3YOR054C PRI1P10363 409 aa5.79□□□□□ -1.48
VHS3YOR054C SSN2P38931 1420 aa5.79□□□□□ -1.48
VHS3YOR054C MYO2P19524 1574 aaKnown RBP5.79□□□□□ -1.48
VHS3YOR054C ESP1Q03018 1630 aa5.78□□□□□ -1.48
VHS3YOR054C ESC1Q03661 1658 aaKnown RBP5.78□□□□□ -1.48
VHS3YOR054C MET5P47169 1442 aa5.76□□□□□ -1.49
VHS3YOR054C TAF2P23255 1407 aa5.75□□□□□ -1.49
VHS3YOR054C EBP2P36049 427 aaKnown RBP5.75□□□□□ -1.49
VHS3YOR054C CAB3P36076 571 aa5.74□□□□□ -1.49
VHS3YOR054C LTE1P07866 1435 aa5.73□□□□□ -1.49
VHS3YOR054C RPA190P10964 1664 aaKnown RBP5.72□□□□□ -1.49
VHS3YOR054C CDC25P04821 1589 aa5.72□□□□□ -1.49
VHS3YOR054C UFD4P33202 1483 aa5.71□□□□□ -1.49
VHS3YOR054C TAF7Q05021 590 aa5.7□□□□□ -1.5
VHS3YOR054C TY1B-BRQ12193 1756 aa5.69□□□□□ -1.5
VHS3YOR054C TY1B-GR3Q12316 1755 aa5.69□□□□□ -1.5
VHS3YOR054C TY1B-ORQ92393 1755 aa5.69□□□□□ -1.5
VHS3YOR054C RKR1Q04781 1562 aa5.69□□□□□ -1.5
VHS3YOR054C TY2B-LR1P0C2J3 1770 aa5.69□□□□□ -1.5
VHS3YOR054C TY2B-FP0CX63 1770 aa5.69□□□□□ -1.5
VHS3YOR054C TY2B-GR2P0CX64 1770 aa5.69□□□□□ -1.5
VHS3YOR054C TY2B-CP25384 1770 aa5.69□□□□□ -1.5
VHS3YOR054C TY2B-DR2Q03494 1770 aa5.69□□□□□ -1.5
VHS3YOR054C TY1B-DR1Q03855 1755 aa5.69□□□□□ -1.5
VHS3YOR054C TY2B-DR3Q07791 1770 aaKnown RBP5.69□□□□□ -1.5
VHS3YOR054C TY2B-OR1Q12113 1770 aa5.69□□□□□ -1.5
VHS3YOR054C TY2B-DR1Q12472 1770 aa5.69□□□□□ -1.5
VHS3YOR054C TY2B-OR2Q12501 1770 aa5.69□□□□□ -1.5
VHS3YOR054C BNI1P41832 1953 aa5.68□□□□□ -1.5
VHS3YOR054C SCC2Q04002 1493 aa5.67□□□□□ -1.5
VHS3YOR054C YPK9Q12697 1472 aa5.67□□□□□ -1.5
VHS3YOR054C CHD1P32657 1468 aa5.67□□□□□ -1.5
VHS3YOR054C GEA2P39993 1459 aaKnown RBP5.65□□□□□ -1.5
VHS3YOR054C DNF1P32660 1571 aa5.65□□□□□ -1.51
VHS3YOR054C RPO31P04051 1460 aa5.64□□□□□ -1.51
VHS3YOR054C DMA1P38823 416 aa5.64□□□□□ -1.51
VHS3YOR054C ISW2Q08773 1120 aa5.62□□□□□ -1.51
VHS3YOR054C TY1B-HO13535 1793 aa5.62□□□□□ -1.51
VHS3YOR054C TY1B-DR5P0C2I2 1755 aa5.62□□□□□ -1.51
VHS3YOR054C TY1B-DR6P0C2I3 1755 aa5.62□□□□□ -1.51
VHS3YOR054C TY1B-LR2P0C2I5 1755 aa5.62□□□□□ -1.51
VHS3YOR054C TY1B-LR3P0C2I6 1755 aaKnown RBP5.62□□□□□ -1.51
VHS3YOR054C TY1B-PR1P0C2I9 1755 aaKnown RBP5.62□□□□□ -1.51
VHS3YOR054C TY1B-PR2P0C2J0 1756 aa5.62□□□□□ -1.51
VHS3YOR054C TY1B-PR3P0C2J1 1755 aaKnown RBP5.62□□□□□ -1.51
VHS3YOR054C TY1B-JR1P47098 1755 aa5.62□□□□□ -1.51
VHS3YOR054C TY1B-ML2Q03434 1755 aaKnown RBP5.62□□□□□ -1.51
VHS3YOR054C TY1B-ER1Q03612 1755 aa5.62□□□□□ -1.51
VHS3YOR054C TY1B-ML1Q04711 1755 aaKnown RBP5.62□□□□□ -1.51
VHS3YOR054C TY1B-GR2Q12269 1755 aa5.62□□□□□ -1.51
VHS3YOR054C TY1B-OLQ12273 1755 aa5.62□□□□□ -1.51
VHS3YOR054C TY1B-PLQ12414 1755 aaKnown RBP5.62□□□□□ -1.51
VHS3YOR054C PAN1P32521 1480 aa5.62□□□□□ -1.51
VHS3YOR054C TY2B-BQ12491 1770 aa5.61□□□□□ -1.51
VHS3YOR054C BUD31P25337 157 aaPredicted RBP5.59□□□□□ -1.51
VHS3YOR054C IRC20Q06554 1556 aa5.59□□□□□ -1.52
VHS3YOR054C YPR148CQ06523 435 aa5.58□□□□□ -1.52
VHS3YOR054C YFR006WP43590 535 aa5.58□□□□□ -1.52
VHS3YOR054C TY1B-DR3Q99231 1755 aa5.57□□□□□ -1.52
Retrieved 100 of 5,963 RNA–protein pairs in 15.7 ms