RNA–Protein interactions for RNA: YMR304W

UBP15, Transcript of Ubiquitin-specific protease involved in protein deubiquitination, yeast

Gene UBP15, Length 3,693 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UBP15	YMR304W	MTC1	P47018	478 aa	Known RBP	5.79	□□□□□ -1.48
UBP15	YMR304W	MON2	P48563	1636 aa	Predicted RBP	5.75	□□□□□ -1.49
UBP15	YMR304W	DRS1	P32892	752 aa	Known RBP	5.5	□□□□□ -1.53
UBP15	YMR304W	INO80	P53115	1489 aa		5.48	□□□□□ -1.53
UBP15	YMR304W	KOG1	P38873	1557 aa		5.36	□□□□□ -1.55
UBP15	YMR304W	FAP1	P53971	965 aa		5.28	□□□□□ -1.56
UBP15	YMR304W	DNA2	P38859	1522 aa		5.22	□□□□□ -1.57
UBP15	YMR304W	RSE1	Q04693	1361 aa	Known RBP	5.2	□□□□□ -1.58
UBP15	YMR304W	SWR1	Q05471	1514 aa		5.15	□□□□□ -1.58
UBP15	YMR304W	SPA2	P23201	1466 aa	Known RBP	5.11	□□□□□ -1.59
UBP15	YMR304W	TCB3	Q03640	1545 aa	Known RBP	5.07	□□□□□ -1.6
UBP15	YMR304W	TY1B-DR4	Q07793	1604 aa		5.01	□□□□□ -1.61
UBP15	YMR304W	MIF2	P35201	549 aa		4.94	□□□□□ -1.62
UBP15	YMR304W	PRY3	P47033	881 aa		4.93	□□□□□ -1.62
UBP15	YMR304W	THO2	P53552	1597 aa	Known RBP	4.88	□□□□□ -1.63
UBP15	YMR304W	AAD16	Q02895	342 aa		4.84	□□□□□ -1.63
UBP15	YMR304W	PRI1	P10363	409 aa		4.83	□□□□□ -1.64
UBP15	YMR304W	ISW2	Q08773	1120 aa		4.82	□□□□□ -1.64
UBP15	YMR304W	DIP2	Q12220	943 aa	Predicted RBP	4.78	□□□□□ -1.64
UBP15	YMR304W	REV3	P14284	1504 aa		4.78	□□□□□ -1.64
UBP15	YMR304W	RPG1	P38249	964 aa	Known RBP	4.77	□□□□□ -1.65
UBP15	YMR304W	PEP1	P32319	1579 aa		4.72	□□□□□ -1.65
UBP15	YMR304W	SSK2	P53599	1579 aa		4.71	□□□□□ -1.66
UBP15	YMR304W	BUD4	P47136	1447 aa		4.68	□□□□□ -1.66
UBP15	YMR304W	MYO2	P19524	1574 aa	Known RBP	4.66	□□□□□ -1.66
UBP15	YMR304W	MDS3	P53094	1487 aa		4.65	□□□□□ -1.66
UBP15	YMR304W	LTE1	P07866	1435 aa		4.64	□□□□□ -1.67
UBP15	YMR304W	TSR3	Q12094	313 aa	Known RBP	4.64	□□□□□ -1.67
UBP15	YMR304W	DNF1	P32660	1571 aa		4.63	□□□□□ -1.67
UBP15	YMR304W	MET5	P47169	1442 aa		4.62	□□□□□ -1.67
UBP15	YMR304W	BFR2	Q06631	534 aa	Known RBP	4.6	□□□□□ -1.67
UBP15	YMR304W	HSL1	P34244	1518 aa		4.6	□□□□□ -1.67
UBP15	YMR304W	SPT6	P23615	1451 aa	Known RBP	4.59	□□□□□ -1.67
UBP15	YMR304W	BPT1	P14772	1559 aa		4.58	□□□□□ -1.68
UBP15	YMR304W	HAA1	Q12753	694 aa	Known RBP	4.57	□□□□□ -1.68
UBP15	YMR304W	ECM5	Q03214	1411 aa		4.56	□□□□□ -1.68
UBP15	YMR304W	ESC1	Q03661	1658 aa	Known RBP	4.56	□□□□□ -1.68
UBP15	YMR304W	AVT3	P36062	692 aa		4.55	□□□□□ -1.68
UBP15	YMR304W	YCF1	P39109	1515 aa	Known RBP	4.54	□□□□□ -1.68
UBP15	YMR304W	IRC20	Q06554	1556 aa		4.53	□□□□□ -1.68
UBP15	YMR304W	YCK3	P39962	524 aa		4.51	□□□□□ -1.69
UBP15	YMR304W	YFR006W	P43590	535 aa		4.51	□□□□□ -1.69
UBP15	YMR304W	RPL17A	P05740	184 aa	Known RBP	4.49	□□□□□ -1.69
UBP15	YMR304W	REB1	P21538	810 aa		4.49	□□□□□ -1.69
UBP15	YMR304W	RPL17B	P46990	184 aa	Known RBP	4.49	□□□□□ -1.69
UBP15	YMR304W	HIR3	P47171	1648 aa		4.48	□□□□□ -1.69
UBP15	YMR304W	RPA190	P10964	1664 aa	Known RBP	4.47	□□□□□ -1.69
UBP15	YMR304W	MRPL32	P25348	183 aa		4.46	□□□□□ -1.7
UBP15	YMR304W	GEA2	P39993	1459 aa	Known RBP	4.46	□□□□□ -1.7
UBP15	YMR304W	SGS1	P35187	1447 aa		4.45	□□□□□ -1.7
UBP15	YMR304W	CDC25	P04821	1589 aa		4.44	□□□□□ -1.7
UBP15	YMR304W	ATG2	P53855	1592 aa		4.42	□□□□□ -1.7
UBP15	YMR304W	SIN3	P22579	1536 aa		4.41	□□□□□ -1.7
UBP15	YMR304W	BNI1	P41832	1953 aa		4.41	□□□□□ -1.7
UBP15	YMR304W	RKR1	Q04781	1562 aa		4.39	□□□□□ -1.71
UBP15	YMR304W	RPO31	P04051	1460 aa		4.38	□□□□□ -1.71
UBP15	YMR304W	YOR093C	Q12275	1648 aa		4.38	□□□□□ -1.71
UBP15	YMR304W	ESP1	Q03018	1630 aa		4.32	□□□□□ -1.72
UBP15	YMR304W	MMS1	Q06211	1407 aa		4.31	□□□□□ -1.72
UBP15	YMR304W	DNF2	Q12675	1612 aa		4.29	□□□□□ -1.72
UBP15	YMR304W	TAF2	P23255	1407 aa		4.27	□□□□□ -1.73
UBP15	YMR304W	DRS2	P39524	1355 aa		4.25	□□□□□ -1.73
UBP15	YMR304W	ABP1	P15891	592 aa	Known RBP	4.25	□□□□□ -1.73
UBP15	YMR304W	YGL015C	P33199	130 aa		4.23	□□□□□ -1.73
UBP15	YMR304W	TRM3	Q07527	1436 aa		4.23	□□□□□ -1.73
UBP15	YMR304W	CHD1	P32657	1468 aa		4.23	□□□□□ -1.73
UBP15	YMR304W	NTE1	Q04958	1679 aa		4.22	□□□□□ -1.73
UBP15	YMR304W	YPK9	Q12697	1472 aa		4.21	□□□□□ -1.74
UBP15	YMR304W	SPT21	P35209	758 aa		4.2	□□□□□ -1.74
UBP15	YMR304W	PAN1	P32521	1480 aa		4.2	□□□□□ -1.74
UBP15	YMR304W	CDC27	P38042	758 aa		4.19	□□□□□ -1.74
UBP15	YMR304W	XRN1	P22147	1528 aa	Known RBP	4.18	□□□□□ -1.74
UBP15	YMR304W	PDR15	Q04182	1529 aa	Known RBP	4.18	□□□□□ -1.74
UBP15	YMR304W	YKR023W	P36119	530 aa	Known RBP	4.17	□□□□□ -1.74
UBP15	YMR304W	HO	P09932	586 aa		4.15	□□□□□ -1.75
UBP15	YMR304W	TY1B-BR	Q12193	1756 aa		4.14	□□□□□ -1.75
UBP15	YMR304W	TY1B-GR3	Q12316	1755 aa		4.14	□□□□□ -1.75
UBP15	YMR304W	TY1B-OR	Q92393	1755 aa		4.14	□□□□□ -1.75
UBP15	YMR304W	VPS15	P22219	1454 aa		4.14	□□□□□ -1.75
UBP15	YMR304W	DCD1	P06773	312 aa		4.14	□□□□□ -1.75
UBP15	YMR304W	TRM732	Q03496	1420 aa		4.13	□□□□□ -1.75
UBP15	YMR304W	HAP1	P0CE41	1502 aa		4.13	□□□□□ -1.75
UBP15	YMR304W	DOP1	Q03921	1698 aa		4.11	□□□□□ -1.75
UBP15	YMR304W	UFD4	P33202	1483 aa		4.11	□□□□□ -1.75
UBP15	YMR304W	SCC2	Q04002	1493 aa		4.11	□□□□□ -1.75
UBP15	YMR304W	ITT1	Q04638	464 aa		4.11	□□□□□ -1.75
UBP15	YMR304W	NUP170	P38181	1502 aa		4.1	□□□□□ -1.75
UBP15	YMR304W	TFC8	Q12308	588 aa		4.1	□□□□□ -1.75
UBP15	YMR304W	BUD3	P25558	1636 aa		4.09	□□□□□ -1.75
UBP15	YMR304W	MAP2	P38174	421 aa	Known RBP	4.08	□□□□□ -1.76
UBP15	YMR304W	SNT2	P53127	1403 aa		4.07	□□□□□ -1.76
UBP15	YMR304W	RIM101	P33400	625 aa		4.07	□□□□□ -1.76
UBP15	YMR304W	SPO14	P36126	1683 aa		4.07	□□□□□ -1.76
UBP15	YMR304W	UBP10	P53874	792 aa	Predicted RBP	4.06	□□□□□ -1.76
UBP15	YMR304W	TY1B-H	O13535	1793 aa		4.05	□□□□□ -1.76
UBP15	YMR304W	TY1B-DR5	P0C2I2	1755 aa		4.05	□□□□□ -1.76
UBP15	YMR304W	TY1B-DR6	P0C2I3	1755 aa		4.05	□□□□□ -1.76
UBP15	YMR304W	TY1B-LR2	P0C2I5	1755 aa		4.05	□□□□□ -1.76
UBP15	YMR304W	TY1B-LR3	P0C2I6	1755 aa	Known RBP	4.05	□□□□□ -1.76
UBP15	YMR304W	TY1B-PR1	P0C2I9	1755 aa	Known RBP	4.05	□□□□□ -1.76

Retrieved 100 of 5,963 RNA–protein pairs in 12.5 ms