RNA–Protein interactions for RNA: YLR378C

SEC61, Transcript of Conserved ER protein translocation channel, yeastyeast

Gene SEC61, Length 1,443 nt, Biotype protein coding, Subcellular localisation Mitochondria, Peroxisome .

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SEC61YLR378C SGS1P35187 1447 aa16.56■□□□□ 0.24
SEC61YLR378C INO80P53115 1489 aa16.3■□□□□ 0.2
SEC61YLR378C TCB3Q03640 1545 aaKnown RBP16.14■□□□□ 0.17
SEC61YLR378C MON2P48563 1636 aaPredicted RBP16.01■□□□□ 0.15
SEC61YLR378C TY1B-DR4Q07793 1604 aa15.92■□□□□ 0.14
SEC61YLR378C SPA2P23201 1466 aaKnown RBP15.72■□□□□ 0.11
SEC61YLR378C SSN2P38931 1420 aa15.69■□□□□ 0.1
SEC61YLR378C SWR1Q05471 1514 aa15.64■□□□□ 0.09
SEC61YLR378C HSL1P34244 1518 aa15.58■□□□□ 0.08
SEC61YLR378C SPT6P23615 1451 aaKnown RBP15.57■□□□□ 0.08
SEC61YLR378C DRS1P32892 752 aaKnown RBP15.32■□□□□ 0.04
SEC61YLR378C HIR3P47171 1648 aa15.3■□□□□ 0.04
SEC61YLR378C DNA2P38859 1522 aa15.26■□□□□ 0.03
SEC61YLR378C KOG1P38873 1557 aa15.23■□□□□ 0.03
SEC61YLR378C XRN1P22147 1528 aaKnown RBP15.19■□□□□ 0.02
SEC61YLR378C REV3P14284 1504 aa14.98□□□□□ -0.01
SEC61YLR378C THO2P53552 1597 aaKnown RBP14.89□□□□□ -0.03
SEC61YLR378C SIN3P22579 1536 aa14.86□□□□□ -0.03
SEC61YLR378C BUD4P47136 1447 aa14.86□□□□□ -0.03
SEC61YLR378C ECM5Q03214 1411 aa14.83□□□□□ -0.03
SEC61YLR378C TAF2P23255 1407 aa14.79□□□□□ -0.04
SEC61YLR378C SSK2P53599 1579 aa14.76□□□□□ -0.05
SEC61YLR378C ESP1Q03018 1630 aa14.67□□□□□ -0.06
SEC61YLR378C ATG2P53855 1592 aa14.65□□□□□ -0.06
SEC61YLR378C MYO2P19524 1574 aaKnown RBP14.62□□□□□ -0.07
SEC61YLR378C SKI3P17883 1432 aaKnown RBP14.61□□□□□ -0.07
SEC61YLR378C MDS3P53094 1487 aa14.59□□□□□ -0.07
SEC61YLR378C PEP1P32319 1579 aa14.54□□□□□ -0.08
SEC61YLR378C YPK9Q12697 1472 aa14.44□□□□□ -0.1
SEC61YLR378C POL1P13382 1468 aa14.32□□□□□ -0.12
SEC61YLR378C SCC2Q04002 1493 aa14.32□□□□□ -0.12
SEC61YLR378C RPO31P04051 1460 aa14.26□□□□□ -0.13
SEC61YLR378C STU1P38198 1513 aa14.25□□□□□ -0.13
SEC61YLR378C UFD4P33202 1483 aa14.25□□□□□ -0.13
SEC61YLR378C RSE1Q04693 1361 aaKnown RBP14.25□□□□□ -0.13
SEC61YLR378C RKR1Q04781 1562 aa14.22□□□□□ -0.13
SEC61YLR378C BPT1P14772 1559 aa14.19□□□□□ -0.14
SEC61YLR378C YTA7P40340 1379 aa14.16□□□□□ -0.14
SEC61YLR378C TOP2P06786 1428 aaKnown RBP14.15□□□□□ -0.14
SEC61YLR378C YCF1P39109 1515 aaKnown RBP14.13□□□□□ -0.15
SEC61YLR378C YOR1P53049 1477 aa14.13□□□□□ -0.15
SEC61YLR378C TY2B-LR1P0C2J3 1770 aa14.09□□□□□ -0.15
SEC61YLR378C TY2B-FP0CX63 1770 aa14.09□□□□□ -0.15
SEC61YLR378C TY2B-GR2P0CX64 1770 aa14.09□□□□□ -0.15
SEC61YLR378C TY2B-CP25384 1770 aa14.09□□□□□ -0.15
SEC61YLR378C TY2B-DR2Q03494 1770 aa14.09□□□□□ -0.15
SEC61YLR378C TY1B-DR1Q03855 1755 aa14.09□□□□□ -0.15
SEC61YLR378C TY2B-DR3Q07791 1770 aaKnown RBP14.09□□□□□ -0.15
SEC61YLR378C TY2B-OR1Q12113 1770 aa14.09□□□□□ -0.15
SEC61YLR378C TY2B-DR1Q12472 1770 aa14.09□□□□□ -0.15
SEC61YLR378C TY2B-OR2Q12501 1770 aa14.09□□□□□ -0.15
SEC61YLR378C CHD1P32657 1468 aa14.08□□□□□ -0.16
SEC61YLR378C SMC4Q12267 1418 aa14.07□□□□□ -0.16
SEC61YLR378C MMS22Q06164 1454 aa14.01□□□□□ -0.17
SEC61YLR378C TY1B-DR3Q99231 1755 aa14□□□□□ -0.17
SEC61YLR378C MTC1P47018 478 aaKnown RBP13.99□□□□□ -0.17
SEC61YLR378C MYO4P32492 1471 aa13.99□□□□□ -0.17
SEC61YLR378C RQC2Q12532 1038 aaKnown RBP13.98□□□□□ -0.17
SEC61YLR378C TY2B-BQ12491 1770 aa13.96□□□□□ -0.17
SEC61YLR378C SAS10Q12136 610 aaPredicted RBP13.92□□□□□ -0.18
SEC61YLR378C TY1B-BRQ12193 1756 aa13.91□□□□□ -0.18
SEC61YLR378C TY1B-GR3Q12316 1755 aa13.91□□□□□ -0.18
SEC61YLR378C TY1B-ORQ92393 1755 aa13.91□□□□□ -0.18
SEC61YLR378C CDC25P04821 1589 aa13.9□□□□□ -0.18
SEC61YLR378C TY1B-HO13535 1793 aa13.88□□□□□ -0.19
SEC61YLR378C TY1B-DR5P0C2I2 1755 aa13.88□□□□□ -0.19
SEC61YLR378C TY1B-DR6P0C2I3 1755 aa13.88□□□□□ -0.19
SEC61YLR378C TY1B-LR2P0C2I5 1755 aa13.88□□□□□ -0.19
SEC61YLR378C TY1B-LR3P0C2I6 1755 aaKnown RBP13.88□□□□□ -0.19
SEC61YLR378C TY1B-PR1P0C2I9 1755 aaKnown RBP13.88□□□□□ -0.19
SEC61YLR378C TY1B-PR2P0C2J0 1756 aa13.88□□□□□ -0.19
SEC61YLR378C TY1B-PR3P0C2J1 1755 aaKnown RBP13.88□□□□□ -0.19
SEC61YLR378C TY1B-JR1P47098 1755 aa13.88□□□□□ -0.19
SEC61YLR378C TY1B-ML2Q03434 1755 aaKnown RBP13.88□□□□□ -0.19
SEC61YLR378C TY1B-ER1Q03612 1755 aa13.88□□□□□ -0.19
SEC61YLR378C TY1B-ML1Q04711 1755 aaKnown RBP13.88□□□□□ -0.19
SEC61YLR378C TY1B-GR2Q12269 1755 aa13.88□□□□□ -0.19
SEC61YLR378C TY1B-OLQ12273 1755 aa13.88□□□□□ -0.19
SEC61YLR378C TY1B-PLQ12414 1755 aaKnown RBP13.88□□□□□ -0.19
SEC61YLR378C SPP41P38904 1435 aa13.84□□□□□ -0.19
SEC61YLR378C TAF7Q05021 590 aa13.84□□□□□ -0.19
SEC61YLR378C PAN1P32521 1480 aa13.83□□□□□ -0.2
SEC61YLR378C STH1P32597 1359 aa13.78□□□□□ -0.2
SEC61YLR378C SNQ2P32568 1501 aaKnown RBP13.78□□□□□ -0.2
SEC61YLR378C ESC1Q03661 1658 aaKnown RBP13.77□□□□□ -0.2
SEC61YLR378C TSC11P40061 1430 aa13.74□□□□□ -0.21
SEC61YLR378C VTH1P40438 1549 aa13.72□□□□□ -0.21
SEC61YLR378C VTH2P40890 1549 aa13.72□□□□□ -0.21
SEC61YLR378C MLP2P40457 1679 aa13.7□□□□□ -0.22
SEC61YLR378C TRM732Q03496 1420 aa13.7□□□□□ -0.22
SEC61YLR378C DNF1P32660 1571 aa13.65□□□□□ -0.22
SEC61YLR378C TY1B-JR2P47100 1755 aaKnown RBP13.64□□□□□ -0.23
SEC61YLR378C TY1B-ER2Q03619 1755 aa13.64□□□□□ -0.23
SEC61YLR378C TY1B-MR1Q04214 1755 aa13.64□□□□□ -0.23
SEC61YLR378C TY1B-MR2Q04670 1755 aaKnown RBP13.64□□□□□ -0.23
SEC61YLR378C TY1B-LR1Q12088 1755 aaKnown RBP13.64□□□□□ -0.23
SEC61YLR378C TY1B-NL1Q12112 1755 aa13.64□□□□□ -0.23
SEC61YLR378C TY1B-GR1Q12141 1755 aa13.64□□□□□ -0.23
SEC61YLR378C TY1B-BLQ12490 1755 aa13.64□□□□□ -0.23
SEC61YLR378C RPA190P10964 1664 aaKnown RBP13.64□□□□□ -0.23
Retrieved 100 of 5,963 RNA–protein pairs in 36.5 ms