RNA–Protein interactions for RNA: YLR058C

SHM2, Transcript of Cytosolic serine hydroxymethyltransferase, yeastyeast

Gene SHM2, Length 1,410 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SHM2YLR058C SGS1P35187 1447 aa19.52■□□□□ 0.71
SHM2YLR058C MON2P48563 1636 aaPredicted RBP19.41■□□□□ 0.7
SHM2YLR058C INO80P53115 1489 aa19.35■□□□□ 0.69
SHM2YLR058C TCB3Q03640 1545 aaKnown RBP19.21■□□□□ 0.67
SHM2YLR058C TY1B-DR4Q07793 1604 aa19.04■□□□□ 0.64
SHM2YLR058C SWR1Q05471 1514 aa18.84■□□□□ 0.61
SHM2YLR058C HSL1P34244 1518 aa18.58■□□□□ 0.57
SHM2YLR058C SPT6P23615 1451 aaKnown RBP18.54■□□□□ 0.56
SHM2YLR058C DNA2P38859 1522 aa18.48■□□□□ 0.55
SHM2YLR058C SSN2P38931 1420 aa18.4■□□□□ 0.54
SHM2YLR058C SPA2P23201 1466 aaKnown RBP18.38■□□□□ 0.53
SHM2YLR058C KOG1P38873 1557 aa18.33■□□□□ 0.52
SHM2YLR058C HIR3P47171 1648 aa18.22■□□□□ 0.51
SHM2YLR058C XRN1P22147 1528 aaKnown RBP18.01■□□□□ 0.47
SHM2YLR058C DRS1P32892 752 aaKnown RBP17.8■□□□□ 0.44
SHM2YLR058C ECM5Q03214 1411 aa17.78■□□□□ 0.44
SHM2YLR058C THO2P53552 1597 aaKnown RBP17.77■□□□□ 0.43
SHM2YLR058C BUD4P47136 1447 aa17.76■□□□□ 0.43
SHM2YLR058C REV3P14284 1504 aa17.74■□□□□ 0.43
SHM2YLR058C SIN3P22579 1536 aa17.59■□□□□ 0.41
SHM2YLR058C TAF2P23255 1407 aa17.51■□□□□ 0.39
SHM2YLR058C MDS3P53094 1487 aa17.49■□□□□ 0.39
SHM2YLR058C ATG2P53855 1592 aa17.48■□□□□ 0.39
SHM2YLR058C SSK2P53599 1579 aa17.46■□□□□ 0.39
SHM2YLR058C PEP1P32319 1579 aa17.44■□□□□ 0.38
SHM2YLR058C ESP1Q03018 1630 aa17.33■□□□□ 0.36
SHM2YLR058C SKI3P17883 1432 aaKnown RBP17.32■□□□□ 0.36
SHM2YLR058C RSE1Q04693 1361 aaKnown RBP17.31■□□□□ 0.36
SHM2YLR058C MYO2P19524 1574 aaKnown RBP17.18■□□□□ 0.34
SHM2YLR058C YPK9Q12697 1472 aa17.11■□□□□ 0.33
SHM2YLR058C SCC2Q04002 1493 aa17.01■□□□□ 0.31
SHM2YLR058C BPT1P14772 1559 aa16.96■□□□□ 0.31
SHM2YLR058C UFD4P33202 1483 aa16.95■□□□□ 0.3
SHM2YLR058C RPO31P04051 1460 aa16.92■□□□□ 0.3
SHM2YLR058C POL1P13382 1468 aa16.85■□□□□ 0.29
SHM2YLR058C MTC1P47018 478 aaKnown RBP16.81■□□□□ 0.28
SHM2YLR058C YCF1P39109 1515 aaKnown RBP16.78■□□□□ 0.28
SHM2YLR058C RKR1Q04781 1562 aa16.75■□□□□ 0.27
SHM2YLR058C STU1P38198 1513 aa16.74■□□□□ 0.27
SHM2YLR058C TOP2P06786 1428 aaKnown RBP16.74■□□□□ 0.27
SHM2YLR058C TY2B-LR1P0C2J3 1770 aa16.73■□□□□ 0.27
SHM2YLR058C TY2B-FP0CX63 1770 aa16.73■□□□□ 0.27
SHM2YLR058C TY2B-GR2P0CX64 1770 aa16.73■□□□□ 0.27
SHM2YLR058C TY2B-CP25384 1770 aa16.73■□□□□ 0.27
SHM2YLR058C TY2B-DR2Q03494 1770 aa16.73■□□□□ 0.27
SHM2YLR058C TY1B-DR1Q03855 1755 aa16.73■□□□□ 0.27
SHM2YLR058C TY2B-DR3Q07791 1770 aaKnown RBP16.73■□□□□ 0.27
SHM2YLR058C TY2B-OR1Q12113 1770 aa16.73■□□□□ 0.27
SHM2YLR058C TY2B-DR1Q12472 1770 aa16.73■□□□□ 0.27
SHM2YLR058C TY2B-OR2Q12501 1770 aa16.73■□□□□ 0.27
SHM2YLR058C YOR1P53049 1477 aa16.65■□□□□ 0.26
SHM2YLR058C SMC4Q12267 1418 aa16.59■□□□□ 0.25
SHM2YLR058C TY1B-DR3Q99231 1755 aa16.58■□□□□ 0.24
SHM2YLR058C CHD1P32657 1468 aa16.57■□□□□ 0.24
SHM2YLR058C TY2B-BQ12491 1770 aa16.56■□□□□ 0.24
SHM2YLR058C CDC25P04821 1589 aa16.55■□□□□ 0.24
SHM2YLR058C TY1B-BRQ12193 1756 aa16.55■□□□□ 0.24
SHM2YLR058C TY1B-GR3Q12316 1755 aa16.55■□□□□ 0.24
SHM2YLR058C TY1B-ORQ92393 1755 aa16.55■□□□□ 0.24
SHM2YLR058C RQC2Q12532 1038 aaKnown RBP16.52■□□□□ 0.23
SHM2YLR058C YTA7P40340 1379 aa16.51■□□□□ 0.23
SHM2YLR058C TY1B-HO13535 1793 aa16.49■□□□□ 0.23
SHM2YLR058C TY1B-DR5P0C2I2 1755 aa16.49■□□□□ 0.23
SHM2YLR058C TY1B-DR6P0C2I3 1755 aa16.49■□□□□ 0.23
SHM2YLR058C TY1B-LR2P0C2I5 1755 aa16.49■□□□□ 0.23
SHM2YLR058C TY1B-LR3P0C2I6 1755 aaKnown RBP16.49■□□□□ 0.23
SHM2YLR058C TY1B-PR1P0C2I9 1755 aaKnown RBP16.49■□□□□ 0.23
SHM2YLR058C TY1B-PR2P0C2J0 1756 aa16.49■□□□□ 0.23
SHM2YLR058C TY1B-PR3P0C2J1 1755 aaKnown RBP16.49■□□□□ 0.23
SHM2YLR058C TY1B-JR1P47098 1755 aa16.49■□□□□ 0.23
SHM2YLR058C TY1B-ML2Q03434 1755 aaKnown RBP16.49■□□□□ 0.23
SHM2YLR058C TY1B-ER1Q03612 1755 aa16.49■□□□□ 0.23
SHM2YLR058C TY1B-ML1Q04711 1755 aaKnown RBP16.49■□□□□ 0.23
SHM2YLR058C TY1B-GR2Q12269 1755 aa16.49■□□□□ 0.23
SHM2YLR058C TY1B-OLQ12273 1755 aa16.49■□□□□ 0.23
SHM2YLR058C TY1B-PLQ12414 1755 aaKnown RBP16.49■□□□□ 0.23
SHM2YLR058C PAN1P32521 1480 aa16.46■□□□□ 0.23
SHM2YLR058C MMS22Q06164 1454 aa16.45■□□□□ 0.22
SHM2YLR058C MYO4P32492 1471 aa16.4■□□□□ 0.22
SHM2YLR058C SPP41P38904 1435 aa16.38■□□□□ 0.21
SHM2YLR058C ESC1Q03661 1658 aaKnown RBP16.37■□□□□ 0.21
SHM2YLR058C DNF1P32660 1571 aa16.37■□□□□ 0.21
SHM2YLR058C RPA190P10964 1664 aaKnown RBP16.28■□□□□ 0.2
SHM2YLR058C TSC11P40061 1430 aa16.26■□□□□ 0.19
SHM2YLR058C VTH1P40438 1549 aa16.24■□□□□ 0.19
SHM2YLR058C VTH2P40890 1549 aa16.24■□□□□ 0.19
SHM2YLR058C TRM732Q03496 1420 aa16.23■□□□□ 0.19
SHM2YLR058C TY1B-JR2P47100 1755 aaKnown RBP16.19■□□□□ 0.18
SHM2YLR058C TY1B-ER2Q03619 1755 aa16.19■□□□□ 0.18
SHM2YLR058C TY1B-MR1Q04214 1755 aa16.19■□□□□ 0.18
SHM2YLR058C TY1B-MR2Q04670 1755 aaKnown RBP16.19■□□□□ 0.18
SHM2YLR058C TY1B-LR1Q12088 1755 aaKnown RBP16.19■□□□□ 0.18
SHM2YLR058C TY1B-NL1Q12112 1755 aa16.19■□□□□ 0.18
SHM2YLR058C TY1B-GR1Q12141 1755 aa16.19■□□□□ 0.18
SHM2YLR058C TY1B-BLQ12490 1755 aa16.19■□□□□ 0.18
SHM2YLR058C SNQ2P32568 1501 aaKnown RBP16.17■□□□□ 0.18
SHM2YLR058C SAS10Q12136 610 aaPredicted RBP16.16■□□□□ 0.18
SHM2YLR058C MET5P47169 1442 aa16.15■□□□□ 0.18
SHM2YLR058C STH1P32597 1359 aa16.1■□□□□ 0.17
SHM2YLR058C NTE1Q04958 1679 aa16.07■□□□□ 0.16
Retrieved 100 of 5,963 RNA–protein pairs in 12.5 ms