RNA–Protein interactions for RNA: YLR005W

SSL1, Transcript of Subunit of the core form of RNA polymerase transcription factor TFIIH, yeastyeast

Gene SSL1, Length 1,386 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SSL1YLR005W MTC1P47018 478 aaKnown RBP11.99□□□□□ -0.49
SSL1YLR005W DRS1P32892 752 aaKnown RBP11.38□□□□□ -0.59
SSL1YLR005W FAP1P53971 965 aa10.71□□□□□ -0.69
SSL1YLR005W PRY3P47033 881 aa10.05□□□□□ -0.8
SSL1YLR005W PRI1P10363 409 aa10.03□□□□□ -0.8
SSL1YLR005W AAD16Q02895 342 aa9.97□□□□□ -0.81
SSL1YLR005W DIP2Q12220 943 aaPredicted RBP9.92□□□□□ -0.82
SSL1YLR005W ISW2Q08773 1120 aa9.9□□□□□ -0.82
SSL1YLR005W RPG1P38249 964 aaKnown RBP9.85□□□□□ -0.83
SSL1YLR005W AVT3P36062 692 aa9.57□□□□□ -0.88
SSL1YLR005W TSR3Q12094 313 aaKnown RBP9.56□□□□□ -0.88
SSL1YLR005W RSE1Q04693 1361 aaKnown RBP9.54□□□□□ -0.88
SSL1YLR005W BFR2Q06631 534 aaKnown RBP9.51□□□□□ -0.89
SSL1YLR005W YCK3P39962 524 aa9.49□□□□□ -0.89
SSL1YLR005W HAA1Q12753 694 aaKnown RBP9.37□□□□□ -0.91
SSL1YLR005W RPL17AP05740 184 aaKnown RBP9.25□□□□□ -0.93
SSL1YLR005W RPL17BP46990 184 aaKnown RBP9.25□□□□□ -0.93
SSL1YLR005W REB1P21538 810 aa9.19□□□□□ -0.94
SSL1YLR005W MRPL32P25348 183 aa9.14□□□□□ -0.95
SSL1YLR005W SPT21P35209 758 aa8.82□□□□□ -1
SSL1YLR005W YKR023WP36119 530 aaKnown RBP8.73□□□□□ -1.01
SSL1YLR005W CDC27P38042 758 aa8.73□□□□□ -1.01
SSL1YLR005W YGL015CP33199 130 aa8.7□□□□□ -1.02
SSL1YLR005W HOP09932 586 aa8.59□□□□□ -1.03
SSL1YLR005W DCD1P06773 312 aa8.57□□□□□ -1.04
SSL1YLR005W RIM101P33400 625 aa8.55□□□□□ -1.04
SSL1YLR005W TFC8Q12308 588 aa8.53□□□□□ -1.04
SSL1YLR005W MAP2P38174 421 aaKnown RBP8.44□□□□□ -1.06
SSL1YLR005W TFA1P36100 482 aa8.42□□□□□ -1.06
SSL1YLR005W UBP10P53874 792 aaPredicted RBP8.37□□□□□ -1.07
SSL1YLR005W MON2P48563 1636 aaPredicted RBP8.34□□□□□ -1.07
SSL1YLR005W OXP1P28273 1286 aa8.3□□□□□ -1.08
SSL1YLR005W SCY1P53009 804 aa8.3□□□□□ -1.08
SSL1YLR005W BCH2P36122 765 aa8.28□□□□□ -1.08
SSL1YLR005W INO80P53115 1489 aa8.25□□□□□ -1.09
SSL1YLR005W PTP3P40048 928 aa8.18□□□□□ -1.1
SSL1YLR005W YIL055CP40523 627 aaKnown RBP8.18□□□□□ -1.1
SSL1YLR005W SLX5P32828 619 aaKnown RBP8.14□□□□□ -1.11
SSL1YLR005W YAH1Q12184 172 aaKnown RBP8.12□□□□□ -1.11
SSL1YLR005W EPS1P40557 701 aa8.08□□□□□ -1.12
SSL1YLR005W TIF4632P39936 914 aaKnown RBP8.06□□□□□ -1.12
SSL1YLR005W BDF1P35817 686 aa8.04□□□□□ -1.12
SSL1YLR005W RSM7P47150 247 aa8.04□□□□□ -1.12
SSL1YLR005W TGL3P40308 642 aa8.01□□□□□ -1.13
SSL1YLR005W AI2P03876 854 aa7.97□□□□□ -1.13
SSL1YLR005W YLR271WQ06152 274 aa7.95□□□□□ -1.14
SSL1YLR005W BBC1P47068 1157 aa7.94□□□□□ -1.14
SSL1YLR005W BUD31P25337 157 aaPredicted RBP7.89□□□□□ -1.15
SSL1YLR005W SWR1Q05471 1514 aa7.88□□□□□ -1.15
SSL1YLR005W DNA2P38859 1522 aa7.86□□□□□ -1.15
SSL1YLR005W TCB3Q03640 1545 aaKnown RBP7.86□□□□□ -1.15
SSL1YLR005W SSP1P38871 571 aa7.85□□□□□ -1.15
SSL1YLR005W KOG1P38873 1557 aa7.84□□□□□ -1.15
SSL1YLR005W TY1B-DR4Q07793 1604 aa7.84□□□□□ -1.16
SSL1YLR005W ARP8Q12386 881 aaKnown RBP RIP-Chip data7.78□□□□□ -1.16not detected
SSL1YLR005W PSD2P53037 1138 aaKnown RBP7.77□□□□□ -1.17
SSL1YLR005W UBP9P39967 754 aa7.72□□□□□ -1.17
SSL1YLR005W MRM1P25270 412 aa7.7□□□□□ -1.18
SSL1YLR005W YOR238WQ08634 303 aa7.7□□□□□ -1.18
SSL1YLR005W CST9Q06032 482 aa7.69□□□□□ -1.18
SSL1YLR005W MST1P07236 462 aa7.67□□□□□ -1.18
SSL1YLR005W YAP5P40574 245 aa7.65□□□□□ -1.18
SSL1YLR005W NSR1P27476 414 aaKnown RBP RIP-Chip data7.64□□□□□ -1.19not detected
SSL1YLR005W MGA2P40578 1113 aa7.63□□□□□ -1.19
SSL1YLR005W YBL029C-AQ3E756 94 aa7.6□□□□□ -1.19
SSL1YLR005W SGS1P35187 1447 aa7.6□□□□□ -1.19
SSL1YLR005W PIB1Q06651 286 aa7.59□□□□□ -1.19
SSL1YLR005W SIS1P25294 352 aaKnown RBP7.58□□□□□ -1.2
SSL1YLR005W WSC3Q12215 556 aa7.54□□□□□ -1.2
SSL1YLR005W HSL1P34244 1518 aa7.54□□□□□ -1.2
SSL1YLR005W SPT6P23615 1451 aaKnown RBP7.52□□□□□ -1.21
SSL1YLR005W RTG3P38165 486 aa7.51□□□□□ -1.21
SSL1YLR005W RCR1P38212 213 aa7.5□□□□□ -1.21
SSL1YLR005W VPS29P38759 282 aa7.5□□□□□ -1.21
SSL1YLR005W GTT3P39996 337 aa7.5□□□□□ -1.21
SSL1YLR005W VNX1P42839 908 aa7.5□□□□□ -1.21
SSL1YLR005W YFR006WP43590 535 aa7.47□□□□□ -1.21
SSL1YLR005W DBP1P24784 617 aaKnown RBP7.46□□□□□ -1.22
SSL1YLR005W YMR1P47147 688 aaKnown RBP RIP-Chip data7.46□□□□□ -1.22not detected
SSL1YLR005W SPA2P23201 1466 aaKnown RBP7.45□□□□□ -1.22
SSL1YLR005W SPP1Q03012 353 aa7.45□□□□□ -1.22
SSL1YLR005W STS1P38637 319 aa7.42□□□□□ -1.22
SSL1YLR005W TIF11P38912 153 aaKnown RBP7.37□□□□□ -1.23
SSL1YLR005W THO2P53552 1597 aaKnown RBP7.37□□□□□ -1.23
SSL1YLR005W HIR3P47171 1648 aa7.36□□□□□ -1.23
SSL1YLR005W VMA1P17255 1071 aaKnown RBP7.33□□□□□ -1.24
SSL1YLR005W BUD4P47136 1447 aa7.33□□□□□ -1.24
SSL1YLR005W SET4P42948 560 aa7.33□□□□□ -1.24
SSL1YLR005W ULI1P43604 169 aa7.32□□□□□ -1.24
SSL1YLR005W ECM5Q03214 1411 aa7.31□□□□□ -1.24
SSL1YLR005W YOL036WQ08206 761 aa7.31□□□□□ -1.24
SSL1YLR005W RAM2P29703 316 aa7.29□□□□□ -1.24
SSL1YLR005W IOC2Q12072 812 aa7.27□□□□□ -1.25
SSL1YLR005W LDB19Q12502 818 aa7.27□□□□□ -1.25
SSL1YLR005W MDS3P53094 1487 aa7.26□□□□□ -1.25
SSL1YLR005W MSB4Q12317 492 aa7.26□□□□□ -1.25
SSL1YLR005W SAM3Q08986 587 aa7.25□□□□□ -1.25
SSL1YLR005W TRP5P00931 707 aaKnown RBP7.23□□□□□ -1.25
SSL1YLR005W EAP1P36041 632 aaKnown RBP7.22□□□□□ -1.25
SSL1YLR005W AIR2Q12476 344 aaKnown RBP7.22□□□□□ -1.25
Retrieved 100 of 5,963 RNA–protein pairs in 23.1 ms