RNA–Protein interactions for RNA: YKR059W

TIF1, Transcript of Translation initiation factor eIF4A, yeast

Gene TIF1, Length 1,188 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
TIF1	YKR059W	DRS1	P32892	752 aa	Known RBP	15.13	■□□□□ 0.01
TIF1	YKR059W	MTC1	P47018	478 aa	Known RBP	15.1	■□□□□ 0.01
TIF1	YKR059W	FAP1	P53971	965 aa		14.14	□□□□□ -0.15
TIF1	YKR059W	BFR2	Q06631	534 aa	Known RBP	13.6	□□□□□ -0.23
TIF1	YKR059W	TFA1	P36100	482 aa		13.45	□□□□□ -0.26
TIF1	YKR059W	MON2	P48563	1636 aa	Predicted RBP	13.3	□□□□□ -0.28
TIF1	YKR059W	PRY3	P47033	881 aa		13.26	□□□□□ -0.29
TIF1	YKR059W	INO80	P53115	1489 aa		13.19	□□□□□ -0.3
TIF1	YKR059W	PRI1	P10363	409 aa		12.94	□□□□□ -0.34
TIF1	YKR059W	AAD16	Q02895	342 aa		12.93	□□□□□ -0.34
TIF1	YKR059W	RQC2	Q12532	1038 aa	Known RBP	12.86	□□□□□ -0.35
TIF1	YKR059W	ISW2	Q08773	1120 aa		12.63	□□□□□ -0.39
TIF1	YKR059W	DNA2	P38859	1522 aa		12.57	□□□□□ -0.4
TIF1	YKR059W	SWR1	Q05471	1514 aa		12.57	□□□□□ -0.4
TIF1	YKR059W	RPG1	P38249	964 aa	Known RBP	12.55	□□□□□ -0.4
TIF1	YKR059W	AVT3	P36062	692 aa		12.53	□□□□□ -0.4
TIF1	YKR059W	TCB3	Q03640	1545 aa	Known RBP	12.5	□□□□□ -0.41
TIF1	YKR059W	DIP2	Q12220	943 aa	Predicted RBP	12.49	□□□□□ -0.41
TIF1	YKR059W	KOG1	P38873	1557 aa		12.45	□□□□□ -0.42
TIF1	YKR059W	TY1B-DR4	Q07793	1604 aa		12.44	□□□□□ -0.42
TIF1	YKR059W	YCK3	P39962	524 aa		12.4	□□□□□ -0.42
TIF1	YKR059W	HAA1	Q12753	694 aa	Known RBP	12.34	□□□□□ -0.43
TIF1	YKR059W	TSR3	Q12094	313 aa	Known RBP	12.29	□□□□□ -0.44
TIF1	YKR059W	SGS1	P35187	1447 aa		12.13	□□□□□ -0.47
TIF1	YKR059W	RSE1	Q04693	1361 aa	Known RBP	12.12	□□□□□ -0.47
TIF1	YKR059W	HSL1	P34244	1518 aa		11.94	□□□□□ -0.5
TIF1	YKR059W	SPT6	P23615	1451 aa	Known RBP	11.93	□□□□□ -0.5
TIF1	YKR059W	MRPL32	P25348	183 aa		11.78	□□□□□ -0.52
TIF1	YKR059W	SPA2	P23201	1466 aa	Known RBP	11.76	□□□□□ -0.53
TIF1	YKR059W	ECM5	Q03214	1411 aa		11.7	□□□□□ -0.54
TIF1	YKR059W	TAF7	Q05021	590 aa		11.69	□□□□□ -0.54
TIF1	YKR059W	THO2	P53552	1597 aa	Known RBP	11.68	□□□□□ -0.54
TIF1	YKR059W	HIR3	P47171	1648 aa		11.67	□□□□□ -0.54
TIF1	YKR059W	BUD4	P47136	1447 aa		11.65	□□□□□ -0.54
TIF1	YKR059W	RPL17A	P05740	184 aa	Known RBP	11.59	□□□□□ -0.55
TIF1	YKR059W	REB1	P21538	810 aa		11.59	□□□□□ -0.55
TIF1	YKR059W	RPL17B	P46990	184 aa	Known RBP	11.59	□□□□□ -0.55
TIF1	YKR059W	DMA1	P38823	416 aa		11.52	□□□□□ -0.57
TIF1	YKR059W	MDS3	P53094	1487 aa		11.51	□□□□□ -0.57
TIF1	YKR059W	PEP1	P32319	1579 aa		11.43	□□□□□ -0.58
TIF1	YKR059W	XRN1	P22147	1528 aa	Known RBP	11.39	□□□□□ -0.59
TIF1	YKR059W	REV3	P14284	1504 aa		11.37	□□□□□ -0.59
TIF1	YKR059W	YGL015C	P33199	130 aa		11.37	□□□□□ -0.59
TIF1	YKR059W	ATG2	P53855	1592 aa		11.29	□□□□□ -0.6
TIF1	YKR059W	BPT1	P14772	1559 aa		11.22	□□□□□ -0.61
TIF1	YKR059W	SIN3	P22579	1536 aa		11.14	□□□□□ -0.63
TIF1	YKR059W	SSK2	P53599	1579 aa		11.14	□□□□□ -0.63
TIF1	YKR059W	LEO1	P38439	464 aa		11.13	□□□□□ -0.63
TIF1	YKR059W	CDC27	P38042	758 aa		11.11	□□□□□ -0.63
TIF1	YKR059W	SSN2	P38931	1420 aa		11.1	□□□□□ -0.63
TIF1	YKR059W	PTP3	P40048	928 aa		11.1	□□□□□ -0.63
TIF1	YKR059W	YCF1	P39109	1515 aa	Known RBP	11.04	□□□□□ -0.64
TIF1	YKR059W	SKI3	P17883	1432 aa	Known RBP	11.01	□□□□□ -0.65
TIF1	YKR059W	YKR023W	P36119	530 aa	Known RBP	10.99	□□□□□ -0.65
TIF1	YKR059W	SPT21	P35209	758 aa		10.97	□□□□□ -0.65
TIF1	YKR059W	TAF2	P23255	1407 aa		10.92	□□□□□ -0.66
TIF1	YKR059W	ESP1	Q03018	1630 aa		10.91	□□□□□ -0.66
TIF1	YKR059W	UFD4	P33202	1483 aa		10.87	□□□□□ -0.67
TIF1	YKR059W	YPK9	Q12697	1472 aa		10.86	□□□□□ -0.67
TIF1	YKR059W	HO	P09932	586 aa		10.84	□□□□□ -0.67
TIF1	YKR059W	MET5	P47169	1442 aa		10.84	□□□□□ -0.67
TIF1	YKR059W	DCD1	P06773	312 aa		10.83	□□□□□ -0.68
TIF1	YKR059W	SCC2	Q04002	1493 aa		10.82	□□□□□ -0.68
TIF1	YKR059W	MAP2	P38174	421 aa	Known RBP	10.81	□□□□□ -0.68
TIF1	YKR059W	RPO31	P04051	1460 aa		10.8	□□□□□ -0.68
TIF1	YKR059W	MYO2	P19524	1574 aa	Known RBP	10.78	□□□□□ -0.68
TIF1	YKR059W	SSP1	P38871	571 aa		10.78	□□□□□ -0.68
TIF1	YKR059W	CHD1	P32657	1468 aa		10.77	□□□□□ -0.69
TIF1	YKR059W	TFC8	Q12308	588 aa		10.76	□□□□□ -0.69
TIF1	YKR059W	CDC25	P04821	1589 aa		10.75	□□□□□ -0.69
TIF1	YKR059W	UBP10	P53874	792 aa	Predicted RBP	10.75	□□□□□ -0.69
TIF1	YKR059W	LTE1	P07866	1435 aa		10.72	□□□□□ -0.69
TIF1	YKR059W	DNF1	P32660	1571 aa		10.7	□□□□□ -0.7
TIF1	YKR059W	RIM101	P33400	625 aa		10.7	□□□□□ -0.7
TIF1	YKR059W	MIF2	P35201	549 aa		10.69	□□□□□ -0.7
TIF1	YKR059W	PAN1	P32521	1480 aa		10.66	□□□□□ -0.7
TIF1	YKR059W	TY2B-LR1	P0C2J3	1770 aa		10.65	□□□□□ -0.71
TIF1	YKR059W	TY2B-F	P0CX63	1770 aa		10.65	□□□□□ -0.71
TIF1	YKR059W	TY2B-GR2	P0CX64	1770 aa		10.65	□□□□□ -0.71
TIF1	YKR059W	TY2B-C	P25384	1770 aa		10.65	□□□□□ -0.71
TIF1	YKR059W	TY2B-DR2	Q03494	1770 aa		10.65	□□□□□ -0.71
TIF1	YKR059W	TY1B-DR1	Q03855	1755 aa		10.65	□□□□□ -0.71
TIF1	YKR059W	TY2B-DR3	Q07791	1770 aa	Known RBP	10.65	□□□□□ -0.71
TIF1	YKR059W	TY2B-OR1	Q12113	1770 aa		10.65	□□□□□ -0.71
TIF1	YKR059W	TY2B-DR1	Q12472	1770 aa		10.65	□□□□□ -0.71
TIF1	YKR059W	TY2B-OR2	Q12501	1770 aa		10.65	□□□□□ -0.71
TIF1	YKR059W	RKR1	Q04781	1562 aa		10.65	□□□□□ -0.71
TIF1	YKR059W	LEU3	P08638	886 aa		10.64	□□□□□ -0.71
TIF1	YKR059W	ESC1	Q03661	1658 aa	Known RBP	10.63	□□□□□ -0.71
TIF1	YKR059W	TY1B-BR	Q12193	1756 aa		10.63	□□□□□ -0.71
TIF1	YKR059W	TY1B-GR3	Q12316	1755 aa		10.63	□□□□□ -0.71
TIF1	YKR059W	TY1B-OR	Q92393	1755 aa		10.63	□□□□□ -0.71
TIF1	YKR059W	ARP8	Q12386	881 aa	Known RBP RIP-Chip data	10.62	□□□□□ -0.71	not detected
TIF1	YKR059W	TOP2	P06786	1428 aa	Known RBP	10.59	□□□□□ -0.71
TIF1	YKR059W	RPA190	P10964	1664 aa	Known RBP	10.59	□□□□□ -0.71
TIF1	YKR059W	BNI1	P41832	1953 aa		10.58	□□□□□ -0.72
TIF1	YKR059W	SCY1	P53009	804 aa		10.56	□□□□□ -0.72
TIF1	YKR059W	GEA2	P39993	1459 aa	Known RBP	10.54	□□□□□ -0.72
TIF1	YKR059W	TY1B-H	O13535	1793 aa		10.52	□□□□□ -0.72
TIF1	YKR059W	TY1B-DR5	P0C2I2	1755 aa		10.52	□□□□□ -0.72

Retrieved 100 of 5,963 RNA–protein pairs in 10.7 ms