RNA–Protein interactions for RNA: YIL061C

SNP1, Transcript of Component of U1 snRNP required for mRNA splicing via spliceosome, yeastyeast

Gene SNP1, Length 903 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SNP1YIL061C SGS1P35187 1447 aa13.8□□□□□ -0.2
SNP1YIL061C INO80P53115 1489 aa13.56□□□□□ -0.24
SNP1YIL061C TCB3Q03640 1545 aaKnown RBP13.36□□□□□ -0.27
SNP1YIL061C SPA2P23201 1466 aaKnown RBP13.22□□□□□ -0.29
SNP1YIL061C TY1B-DR4Q07793 1604 aa13.18□□□□□ -0.3
SNP1YIL061C SSN2P38931 1420 aa13.17□□□□□ -0.3
SNP1YIL061C MON2P48563 1636 aaPredicted RBP13.13□□□□□ -0.31
SNP1YIL061C HSL1P34244 1518 aa12.93□□□□□ -0.34
SNP1YIL061C SPT6P23615 1451 aaKnown RBP12.88□□□□□ -0.35
SNP1YIL061C SWR1Q05471 1514 aa12.88□□□□□ -0.35
SNP1YIL061C DRS1P32892 752 aaKnown RBP12.73□□□□□ -0.37
SNP1YIL061C HIR3P47171 1648 aa12.7□□□□□ -0.38
SNP1YIL061C XRN1P22147 1528 aaKnown RBP12.59□□□□□ -0.39
SNP1YIL061C DNA2P38859 1522 aa12.48□□□□□ -0.41
SNP1YIL061C KOG1P38873 1557 aa12.43□□□□□ -0.42
SNP1YIL061C REV3P14284 1504 aa12.43□□□□□ -0.42
SNP1YIL061C SIN3P22579 1536 aa12.38□□□□□ -0.43
SNP1YIL061C THO2P53552 1597 aaKnown RBP12.3□□□□□ -0.44
SNP1YIL061C SSK2P53599 1579 aa12.28□□□□□ -0.44
SNP1YIL061C BUD4P47136 1447 aa12.26□□□□□ -0.45
SNP1YIL061C TAF2P23255 1407 aa12.21□□□□□ -0.45
SNP1YIL061C ECM5Q03214 1411 aa12.21□□□□□ -0.45
SNP1YIL061C ESP1Q03018 1630 aa12.14□□□□□ -0.47
SNP1YIL061C ATG2P53855 1592 aa12.13□□□□□ -0.47
SNP1YIL061C MYO2P19524 1574 aaKnown RBP12.09□□□□□ -0.47
SNP1YIL061C PEP1P32319 1579 aa12.06□□□□□ -0.48
SNP1YIL061C SKI3P17883 1432 aaKnown RBP12.03□□□□□ -0.48
SNP1YIL061C MDS3P53094 1487 aa12.03□□□□□ -0.48
SNP1YIL061C YPK9Q12697 1472 aa12.02□□□□□ -0.48
SNP1YIL061C POL1P13382 1468 aa11.97□□□□□ -0.49
SNP1YIL061C SCC2Q04002 1493 aa11.9□□□□□ -0.5
SNP1YIL061C CHD1P32657 1468 aa11.89□□□□□ -0.51
SNP1YIL061C STU1P38198 1513 aa11.87□□□□□ -0.51
SNP1YIL061C RPO31P04051 1460 aa11.87□□□□□ -0.51
SNP1YIL061C MTC1P47018 478 aaKnown RBP11.84□□□□□ -0.51
SNP1YIL061C YTA7P40340 1379 aa11.8□□□□□ -0.52
SNP1YIL061C MMS22Q06164 1454 aa11.79□□□□□ -0.52
SNP1YIL061C UFD4P33202 1483 aa11.78□□□□□ -0.52
SNP1YIL061C YOR1P53049 1477 aa11.78□□□□□ -0.52
SNP1YIL061C RKR1Q04781 1562 aa11.78□□□□□ -0.52
SNP1YIL061C TOP2P06786 1428 aaKnown RBP11.77□□□□□ -0.52
SNP1YIL061C YCF1P39109 1515 aaKnown RBP11.76□□□□□ -0.53
SNP1YIL061C SMC4Q12267 1418 aa11.72□□□□□ -0.53
SNP1YIL061C BPT1P14772 1559 aa11.71□□□□□ -0.53
SNP1YIL061C MYO4P32492 1471 aa11.69□□□□□ -0.54
SNP1YIL061C TY2B-LR1P0C2J3 1770 aa11.65□□□□□ -0.54
SNP1YIL061C TY2B-FP0CX63 1770 aa11.65□□□□□ -0.54
SNP1YIL061C TY2B-GR2P0CX64 1770 aa11.65□□□□□ -0.54
SNP1YIL061C TY2B-CP25384 1770 aa11.65□□□□□ -0.54
SNP1YIL061C TY2B-DR2Q03494 1770 aa11.65□□□□□ -0.54
SNP1YIL061C TY1B-DR1Q03855 1755 aa11.65□□□□□ -0.54
SNP1YIL061C TY2B-DR3Q07791 1770 aaKnown RBP11.65□□□□□ -0.54
SNP1YIL061C TY2B-OR1Q12113 1770 aa11.65□□□□□ -0.54
SNP1YIL061C TY2B-DR1Q12472 1770 aa11.65□□□□□ -0.54
SNP1YIL061C TY2B-OR2Q12501 1770 aa11.65□□□□□ -0.54
SNP1YIL061C RSE1Q04693 1361 aaKnown RBP11.64□□□□□ -0.55
SNP1YIL061C TY1B-DR3Q99231 1755 aa11.59□□□□□ -0.55
SNP1YIL061C TY2B-BQ12491 1770 aa11.54□□□□□ -0.56
SNP1YIL061C SAS10Q12136 610 aaPredicted RBP11.52□□□□□ -0.57
SNP1YIL061C SNQ2P32568 1501 aaKnown RBP11.5□□□□□ -0.57
SNP1YIL061C TY1B-BRQ12193 1756 aa11.49□□□□□ -0.57
SNP1YIL061C TY1B-GR3Q12316 1755 aa11.49□□□□□ -0.57
SNP1YIL061C TY1B-ORQ92393 1755 aa11.49□□□□□ -0.57
SNP1YIL061C SPP41P38904 1435 aa11.49□□□□□ -0.57
SNP1YIL061C TY1B-HO13535 1793 aa11.47□□□□□ -0.57
SNP1YIL061C TY1B-DR5P0C2I2 1755 aa11.47□□□□□ -0.57
SNP1YIL061C TY1B-DR6P0C2I3 1755 aa11.47□□□□□ -0.57
SNP1YIL061C TY1B-LR2P0C2I5 1755 aa11.47□□□□□ -0.57
SNP1YIL061C TY1B-LR3P0C2I6 1755 aaKnown RBP11.47□□□□□ -0.57
SNP1YIL061C TY1B-PR1P0C2I9 1755 aaKnown RBP11.47□□□□□ -0.57
SNP1YIL061C TY1B-PR2P0C2J0 1756 aa11.47□□□□□ -0.57
SNP1YIL061C TY1B-PR3P0C2J1 1755 aaKnown RBP11.47□□□□□ -0.57
SNP1YIL061C TY1B-JR1P47098 1755 aa11.47□□□□□ -0.57
SNP1YIL061C TY1B-ML2Q03434 1755 aaKnown RBP11.47□□□□□ -0.57
SNP1YIL061C TY1B-ER1Q03612 1755 aa11.47□□□□□ -0.57
SNP1YIL061C TY1B-ML1Q04711 1755 aaKnown RBP11.47□□□□□ -0.57
SNP1YIL061C TY1B-GR2Q12269 1755 aa11.47□□□□□ -0.57
SNP1YIL061C TY1B-OLQ12273 1755 aa11.47□□□□□ -0.57
SNP1YIL061C TY1B-PLQ12414 1755 aaKnown RBP11.47□□□□□ -0.57
SNP1YIL061C CDC25P04821 1589 aa11.46□□□□□ -0.57
SNP1YIL061C TAF7Q05021 590 aa11.46□□□□□ -0.57
SNP1YIL061C STH1P32597 1359 aa11.45□□□□□ -0.58
SNP1YIL061C PAN1P32521 1480 aa11.42□□□□□ -0.58
SNP1YIL061C TSC11P40061 1430 aa11.42□□□□□ -0.58
SNP1YIL061C RQC2Q12532 1038 aaKnown RBP11.38□□□□□ -0.59
SNP1YIL061C VTH1P40438 1549 aa11.38□□□□□ -0.59
SNP1YIL061C VTH2P40890 1549 aa11.38□□□□□ -0.59
SNP1YIL061C TRM732Q03496 1420 aa11.35□□□□□ -0.59
SNP1YIL061C PDR15Q04182 1529 aaKnown RBP11.35□□□□□ -0.59
SNP1YIL061C SNT2P53127 1403 aa11.34□□□□□ -0.59
SNP1YIL061C MLP2P40457 1679 aa11.33□□□□□ -0.6
SNP1YIL061C ULS1Q08562 1619 aa11.32□□□□□ -0.6
SNP1YIL061C IKI3Q06706 1349 aaKnown RBP11.31□□□□□ -0.6
SNP1YIL061C DNF1P32660 1571 aa11.28□□□□□ -0.6
SNP1YIL061C TY1B-JR2P47100 1755 aaKnown RBP11.28□□□□□ -0.6
SNP1YIL061C TY1B-ER2Q03619 1755 aa11.28□□□□□ -0.6
SNP1YIL061C TY1B-MR1Q04214 1755 aa11.28□□□□□ -0.6
SNP1YIL061C TY1B-MR2Q04670 1755 aaKnown RBP11.28□□□□□ -0.6
SNP1YIL061C TY1B-LR1Q12088 1755 aaKnown RBP11.28□□□□□ -0.6
SNP1YIL061C TY1B-NL1Q12112 1755 aa11.28□□□□□ -0.6
Retrieved 100 of 5,963 RNA–protein pairs in 14.5 ms