RNA–Protein interactions for RNA: YGR143W

SKN1, Transcript of Protein involved in sphingolipid biosynthesis, yeastyeast

Gene SKN1, Length 2,316 nt, Biotype protein coding, Subcellular localisation Mitochondria .

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SKN1YGR143W MON2P48563 1636 aaPredicted RBP10.01□□□□□ -0.81
SKN1YGR143W INO80P53115 1489 aa9.95□□□□□ -0.82
SKN1YGR143W RQC2Q12532 1038 aaKnown RBP9.71□□□□□ -0.85
SKN1YGR143W SGS1P35187 1447 aa9.63□□□□□ -0.87
SKN1YGR143W TY1B-DR4Q07793 1604 aa9.63□□□□□ -0.87
SKN1YGR143W TCB3Q03640 1545 aaKnown RBP9.62□□□□□ -0.87
SKN1YGR143W SWR1Q05471 1514 aa9.61□□□□□ -0.87
SKN1YGR143W DNA2P38859 1522 aa9.53□□□□□ -0.88
SKN1YGR143W BFR2Q06631 534 aaKnown RBP9.49□□□□□ -0.89
SKN1YGR143W KOG1P38873 1557 aa9.38□□□□□ -0.91
SKN1YGR143W HSL1P34244 1518 aa9.33□□□□□ -0.92
SKN1YGR143W SPT6P23615 1451 aaKnown RBP9.3□□□□□ -0.92
SKN1YGR143W SPA2P23201 1466 aaKnown RBP9.2□□□□□ -0.94
SKN1YGR143W HIR3P47171 1648 aa9.14□□□□□ -0.95
SKN1YGR143W RSE1Q04693 1361 aaKnown RBP9.01□□□□□ -0.97
SKN1YGR143W ECM5Q03214 1411 aa9□□□□□ -0.97
SKN1YGR143W XRN1P22147 1528 aaKnown RBP8.99□□□□□ -0.97
SKN1YGR143W SSN2P38931 1420 aa8.98□□□□□ -0.97
SKN1YGR143W THO2P53552 1597 aaKnown RBP8.97□□□□□ -0.97
SKN1YGR143W BUD4P47136 1447 aa8.95□□□□□ -0.98
SKN1YGR143W MDS3P53094 1487 aa8.87□□□□□ -0.99
SKN1YGR143W REV3P14284 1504 aa8.84□□□□□ -0.99
SKN1YGR143W PEP1P32319 1579 aa8.82□□□□□ -1
SKN1YGR143W ATG2P53855 1592 aa8.81□□□□□ -1
SKN1YGR143W TAF2P23255 1407 aa8.74□□□□□ -1.01
SKN1YGR143W SIN3P22579 1536 aa8.73□□□□□ -1.01
SKN1YGR143W SSK2P53599 1579 aa8.68□□□□□ -1.02
SKN1YGR143W URN1Q06525 465 aaKnown RBP8.68□□□□□ -1.02
SKN1YGR143W SKI3P17883 1432 aaKnown RBP8.67□□□□□ -1.02
SKN1YGR143W MTC1P47018 478 aaKnown RBP8.65□□□□□ -1.02
SKN1YGR143W DRS1P32892 752 aaKnown RBP8.64□□□□□ -1.03
SKN1YGR143W TAF7Q05021 590 aa8.64□□□□□ -1.03
SKN1YGR143W ESP1Q03018 1630 aa8.64□□□□□ -1.03
SKN1YGR143W BPT1P14772 1559 aa8.61□□□□□ -1.03
SKN1YGR143W MYO2P19524 1574 aaKnown RBP8.51□□□□□ -1.05
SKN1YGR143W UFD4P33202 1483 aa8.5□□□□□ -1.05
SKN1YGR143W SCC2Q04002 1493 aa8.49□□□□□ -1.05
SKN1YGR143W YPK9Q12697 1472 aa8.49□□□□□ -1.05
SKN1YGR143W EBP2P36049 427 aaKnown RBP8.47□□□□□ -1.05
SKN1YGR143W NOP2P40991 618 aaKnown RBP8.47□□□□□ -1.05
SKN1YGR143W YCF1P39109 1515 aaKnown RBP8.47□□□□□ -1.05
SKN1YGR143W CAB3P36076 571 aa8.43□□□□□ -1.06
SKN1YGR143W RPO31P04051 1460 aa8.42□□□□□ -1.06
SKN1YGR143W TY2B-LR1P0C2J3 1770 aa8.41□□□□□ -1.06
SKN1YGR143W TY2B-FP0CX63 1770 aa8.41□□□□□ -1.06
SKN1YGR143W TY2B-GR2P0CX64 1770 aa8.41□□□□□ -1.06
SKN1YGR143W TY2B-CP25384 1770 aa8.41□□□□□ -1.06
SKN1YGR143W TY2B-DR2Q03494 1770 aa8.41□□□□□ -1.06
SKN1YGR143W TY1B-DR1Q03855 1755 aa8.41□□□□□ -1.06
SKN1YGR143W TY2B-DR3Q07791 1770 aaKnown RBP8.41□□□□□ -1.06
SKN1YGR143W TY2B-OR1Q12113 1770 aa8.41□□□□□ -1.06
SKN1YGR143W TY2B-DR1Q12472 1770 aa8.41□□□□□ -1.06
SKN1YGR143W TY2B-OR2Q12501 1770 aa8.41□□□□□ -1.06
SKN1YGR143W SIS2P36024 562 aa8.4□□□□□ -1.06
SKN1YGR143W TY1B-BRQ12193 1756 aa8.35□□□□□ -1.07
SKN1YGR143W TY1B-GR3Q12316 1755 aa8.35□□□□□ -1.07
SKN1YGR143W TY1B-ORQ92393 1755 aa8.35□□□□□ -1.07
SKN1YGR143W CDC25P04821 1589 aa8.35□□□□□ -1.07
SKN1YGR143W CHD1P32657 1468 aa8.33□□□□□ -1.08
SKN1YGR143W TY2B-BQ12491 1770 aa8.32□□□□□ -1.08
SKN1YGR143W TY1B-DR3Q99231 1755 aa8.31□□□□□ -1.08
SKN1YGR143W RKR1Q04781 1562 aa8.31□□□□□ -1.08
SKN1YGR143W ESC1Q03661 1658 aaKnown RBP8.31□□□□□ -1.08
SKN1YGR143W DNF1P32660 1571 aa8.31□□□□□ -1.08
SKN1YGR143W TOP2P06786 1428 aaKnown RBP8.3□□□□□ -1.08
SKN1YGR143W POL1P13382 1468 aa8.29□□□□□ -1.08
SKN1YGR143W TY1B-HO13535 1793 aa8.28□□□□□ -1.08
SKN1YGR143W TY1B-DR5P0C2I2 1755 aa8.28□□□□□ -1.08
SKN1YGR143W TY1B-DR6P0C2I3 1755 aa8.28□□□□□ -1.08
SKN1YGR143W TY1B-LR2P0C2I5 1755 aa8.28□□□□□ -1.08
SKN1YGR143W TY1B-LR3P0C2I6 1755 aaKnown RBP8.28□□□□□ -1.08
SKN1YGR143W TY1B-PR1P0C2I9 1755 aaKnown RBP8.28□□□□□ -1.08
SKN1YGR143W TY1B-PR2P0C2J0 1756 aa8.28□□□□□ -1.08
SKN1YGR143W TY1B-PR3P0C2J1 1755 aaKnown RBP8.28□□□□□ -1.08
SKN1YGR143W TY1B-JR1P47098 1755 aa8.28□□□□□ -1.08
SKN1YGR143W TY1B-ML2Q03434 1755 aaKnown RBP8.28□□□□□ -1.08
SKN1YGR143W TY1B-ER1Q03612 1755 aa8.28□□□□□ -1.08
SKN1YGR143W TY1B-ML1Q04711 1755 aaKnown RBP8.28□□□□□ -1.08
SKN1YGR143W TY1B-GR2Q12269 1755 aa8.28□□□□□ -1.08
SKN1YGR143W TY1B-OLQ12273 1755 aa8.28□□□□□ -1.08
SKN1YGR143W TY1B-PLQ12414 1755 aaKnown RBP8.28□□□□□ -1.08
SKN1YGR143W PAN1P32521 1480 aa8.25□□□□□ -1.09
SKN1YGR143W STU1P38198 1513 aa8.25□□□□□ -1.09
SKN1YGR143W RPA190P10964 1664 aaKnown RBP8.23□□□□□ -1.09
SKN1YGR143W YOR1P53049 1477 aa8.22□□□□□ -1.09
SKN1YGR143W MMS22Q06164 1454 aa8.21□□□□□ -1.1
SKN1YGR143W SMC4Q12267 1418 aa8.18□□□□□ -1.1
SKN1YGR143W MET5P47169 1442 aa8.17□□□□□ -1.1
SKN1YGR143W AVT3P36062 692 aa8.17□□□□□ -1.1
SKN1YGR143W YFR016CP43597 1233 aaKnown RBP8.17□□□□□ -1.1
SKN1YGR143W SPP41P38904 1435 aa8.14□□□□□ -1.11
SKN1YGR143W TY1B-JR2P47100 1755 aaKnown RBP8.12□□□□□ -1.11
SKN1YGR143W TY1B-ER2Q03619 1755 aa8.12□□□□□ -1.11
SKN1YGR143W TY1B-MR1Q04214 1755 aa8.12□□□□□ -1.11
SKN1YGR143W TY1B-MR2Q04670 1755 aaKnown RBP8.12□□□□□ -1.11
SKN1YGR143W TY1B-LR1Q12088 1755 aaKnown RBP8.12□□□□□ -1.11
SKN1YGR143W TY1B-NL1Q12112 1755 aa8.12□□□□□ -1.11
SKN1YGR143W TY1B-GR1Q12141 1755 aa8.12□□□□□ -1.11
SKN1YGR143W TY1B-BLQ12490 1755 aa8.12□□□□□ -1.11
SKN1YGR143W TRM732Q03496 1420 aa8.12□□□□□ -1.11
Retrieved 100 of 5,963 RNA–protein pairs in 64.2 ms