RNA–Protein interactions for RNA: YFL009W

CDC4, Transcript of F-box protein required for both the G1/S and G2/M phase transitions, yeastyeast

Gene CDC4, Length 2,340 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
CDC4YFL009W DRS1P32892 752 aaKnown RBP10.82□□□□□ -0.68
CDC4YFL009W MTC1P47018 478 aaKnown RBP10.42□□□□□ -0.74
CDC4YFL009W BFR2Q06631 534 aaKnown RBP9.5□□□□□ -0.89
CDC4YFL009W TFA1P36100 482 aa9.31□□□□□ -0.92
CDC4YFL009W AVT3P36062 692 aa9.18□□□□□ -0.94
CDC4YFL009W DIP2Q12220 943 aaPredicted RBP9.09□□□□□ -0.95
CDC4YFL009W RSE1Q04693 1361 aaKnown RBP8.41□□□□□ -1.06
CDC4YFL009W FAP1P53971 965 aa8.28□□□□□ -1.08
CDC4YFL009W ISW2Q08773 1120 aa8.26□□□□□ -1.09
CDC4YFL009W RPG1P38249 964 aaKnown RBP8.22□□□□□ -1.09
CDC4YFL009W PRI1P10363 409 aa8.16□□□□□ -1.1
CDC4YFL009W RPL17AP05740 184 aaKnown RBP8.09□□□□□ -1.11
CDC4YFL009W RPL17BP46990 184 aaKnown RBP8.09□□□□□ -1.11
CDC4YFL009W RQC2Q12532 1038 aaKnown RBP8.01□□□□□ -1.13
CDC4YFL009W SPT21P35209 758 aa7.98□□□□□ -1.13
CDC4YFL009W RIM101P33400 625 aa7.9□□□□□ -1.14
CDC4YFL009W REB1P21538 810 aa7.88□□□□□ -1.15
CDC4YFL009W AAD16Q02895 342 aa7.87□□□□□ -1.15
CDC4YFL009W PRY3P47033 881 aa7.85□□□□□ -1.15
CDC4YFL009W DMA1P38823 416 aa7.8□□□□□ -1.16
CDC4YFL009W PTP3P40048 928 aa7.8□□□□□ -1.16
CDC4YFL009W TSR3Q12094 313 aaKnown RBP7.74□□□□□ -1.17
CDC4YFL009W OXP1P28273 1286 aa7.72□□□□□ -1.17
CDC4YFL009W SSP1P38871 571 aa7.66□□□□□ -1.18
CDC4YFL009W YKR023WP36119 530 aaKnown RBP7.62□□□□□ -1.19
CDC4YFL009W YLR271WQ06152 274 aa7.55□□□□□ -1.2
CDC4YFL009W YAH1Q12184 172 aaKnown RBP7.52□□□□□ -1.21
CDC4YFL009W SGS1P35187 1447 aa7.42□□□□□ -1.22
CDC4YFL009W TFC8Q12308 588 aa7.42□□□□□ -1.22
CDC4YFL009W SPA2P23201 1466 aaKnown RBP7.41□□□□□ -1.22
CDC4YFL009W HOP09932 586 aa7.4□□□□□ -1.23
CDC4YFL009W YIL055CP40523 627 aaKnown RBP7.39□□□□□ -1.23
CDC4YFL009W ARP8Q12386 881 aaKnown RBP RIP-Chip data7.39□□□□□ -1.23not detected
CDC4YFL009W DCD1P06773 312 aa7.38□□□□□ -1.23
CDC4YFL009W YCK3P39962 524 aa7.37□□□□□ -1.23
CDC4YFL009W RSM7P47150 247 aa7.36□□□□□ -1.23
CDC4YFL009W CST9Q06032 482 aa7.36□□□□□ -1.23
CDC4YFL009W CDC27P38042 758 aa7.35□□□□□ -1.23
CDC4YFL009W MGA2P40578 1113 aa7.35□□□□□ -1.23
CDC4YFL009W SAS10Q12136 610 aaPredicted RBP7.33□□□□□ -1.24
CDC4YFL009W SSN2P38931 1420 aa7.32□□□□□ -1.24
CDC4YFL009W MRPL32P25348 183 aa7.32□□□□□ -1.24
CDC4YFL009W PSD2P53037 1138 aaKnown RBP7.31□□□□□ -1.24
CDC4YFL009W TAF7Q05021 590 aa7.28□□□□□ -1.24
CDC4YFL009W LEO1P38439 464 aa7.25□□□□□ -1.25
CDC4YFL009W HAA1Q12753 694 aaKnown RBP7.24□□□□□ -1.25
CDC4YFL009W SKI3P17883 1432 aaKnown RBP7.23□□□□□ -1.25
CDC4YFL009W AI2P03876 854 aa7.23□□□□□ -1.25
CDC4YFL009W BCH2P36122 765 aa7.23□□□□□ -1.25
CDC4YFL009W NOP2P40991 618 aaKnown RBP7.21□□□□□ -1.26
CDC4YFL009W LEU3P08638 886 aa7.16□□□□□ -1.26
CDC4YFL009W RAM2P29703 316 aa7.13□□□□□ -1.27
CDC4YFL009W RCR1P38212 213 aa7.11□□□□□ -1.27
CDC4YFL009W EPS1P40557 701 aa7.1□□□□□ -1.27
CDC4YFL009W BDF1P35817 686 aa7.06□□□□□ -1.28
CDC4YFL009W BBC1P47068 1157 aa7.05□□□□□ -1.28
CDC4YFL009W INO80P53115 1489 aa7.04□□□□□ -1.28
CDC4YFL009W MRM1P25270 412 aa7.03□□□□□ -1.28
CDC4YFL009W NSR1P27476 414 aaKnown RBP RIP-Chip data7□□□□□ -1.29not detected
CDC4YFL009W YPR148CQ06523 435 aa7□□□□□ -1.29
CDC4YFL009W SET1P38827 1080 aaKnown RBP6.99□□□□□ -1.29
CDC4YFL009W SCY1P53009 804 aa6.96□□□□□ -1.3
CDC4YFL009W MAP2P38174 421 aaKnown RBP6.94□□□□□ -1.3
CDC4YFL009W VPS29P38759 282 aa6.92□□□□□ -1.3
CDC4YFL009W MAK11P20484 414 aaKnown RBP6.92□□□□□ -1.3
CDC4YFL009W RTG3P38165 486 aa6.92□□□□□ -1.3
CDC4YFL009W VPS70P47161 811 aa6.89□□□□□ -1.31
CDC4YFL009W CAB3P36076 571 aa6.88□□□□□ -1.31
CDC4YFL009W UBP10P53874 792 aaPredicted RBP6.88□□□□□ -1.31
CDC4YFL009W EBP2P36049 427 aaKnown RBP6.86□□□□□ -1.31
CDC4YFL009W RPN1P38764 993 aaKnown RBP6.86□□□□□ -1.31
CDC4YFL009W ABP1P15891 592 aaKnown RBP6.84□□□□□ -1.31
CDC4YFL009W CKB1P43639 278 aa6.84□□□□□ -1.31
CDC4YFL009W DMA2P53924 522 aa6.83□□□□□ -1.32
CDC4YFL009W CHD1P32657 1468 aa6.83□□□□□ -1.32
CDC4YFL009W STS1P38637 319 aa6.82□□□□□ -1.32
CDC4YFL009W COQ8P27697 501 aa6.82□□□□□ -1.32
CDC4YFL009W DSF2P38213 736 aa6.81□□□□□ -1.32
CDC4YFL009W EDS1P38073 919 aa6.81□□□□□ -1.32
CDC4YFL009W IFH1P39520 1085 aa6.81□□□□□ -1.32
CDC4YFL009W MMS22Q06164 1454 aa6.8□□□□□ -1.32
CDC4YFL009W SPB4P25808 606 aaPredicted RBP6.79□□□□□ -1.32
CDC4YFL009W TCB3Q03640 1545 aaKnown RBP6.77□□□□□ -1.33
CDC4YFL009W SLX5P32828 619 aaKnown RBP6.76□□□□□ -1.33
CDC4YFL009W PBS2P08018 668 aa6.75□□□□□ -1.33
CDC4YFL009W YMR1P47147 688 aaKnown RBP RIP-Chip data6.75□□□□□ -1.33not detected
CDC4YFL009W YFR006WP43590 535 aa6.72□□□□□ -1.33
CDC4YFL009W NOP53Q12080 455 aaKnown RBP6.72□□□□□ -1.33
CDC4YFL009W DBP1P24784 617 aaKnown RBP6.71□□□□□ -1.33
CDC4YFL009W YGL015CP33199 130 aa6.71□□□□□ -1.33
CDC4YFL009W ENP1P38333 483 aaKnown RBP6.7□□□□□ -1.34
CDC4YFL009W NUP42P49686 430 aaKnown RBP6.7□□□□□ -1.34
CDC4YFL009W XRN1P22147 1528 aaKnown RBP6.69□□□□□ -1.34
CDC4YFL009W BUD31P25337 157 aaPredicted RBP6.68□□□□□ -1.34
CDC4YFL009W MIF2P35201 549 aa6.68□□□□□ -1.34
CDC4YFL009W YNR021WP53723 404 aaKnown RBP6.67□□□□□ -1.34
CDC4YFL009W UFD4P33202 1483 aa6.67□□□□□ -1.34
CDC4YFL009W DIT2P21595 489 aa6.66□□□□□ -1.34
CDC4YFL009W PTC3P34221 468 aaKnown RBP6.66□□□□□ -1.34
CDC4YFL009W REF2P42073 533 aaPredicted RBP6.65□□□□□ -1.34
Retrieved 100 of 5,963 RNA–protein pairs in 13.7 ms