RNA–Protein interactions for RNA: YDR394W

RPT3, Transcript of ATPase of the 19S regulatory particle of the 26S proteasome, yeastyeast

Gene RPT3, Length 1,287 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
RPT3YDR394W MTC1P47018 478 aaKnown RBP15.05■□□□□ -0
RPT3YDR394W DRS1P32892 752 aaKnown RBP14.36□□□□□ -0.11
RPT3YDR394W FAP1P53971 965 aa13.14□□□□□ -0.31
RPT3YDR394W PRI1P10363 409 aa12.5□□□□□ -0.41
RPT3YDR394W DIP2Q12220 943 aaPredicted RBP12.47□□□□□ -0.41
RPT3YDR394W AAD16Q02895 342 aa12.37□□□□□ -0.43
RPT3YDR394W ISW2Q08773 1120 aa12.37□□□□□ -0.43
RPT3YDR394W PRY3P47033 881 aa12.36□□□□□ -0.43
RPT3YDR394W RPG1P38249 964 aaKnown RBP12.25□□□□□ -0.45
RPT3YDR394W AVT3P36062 692 aa12.13□□□□□ -0.47
RPT3YDR394W BFR2Q06631 534 aaKnown RBP12.09□□□□□ -0.47
RPT3YDR394W RSE1Q04693 1361 aaKnown RBP11.96□□□□□ -0.49
RPT3YDR394W TSR3Q12094 313 aaKnown RBP11.84□□□□□ -0.51
RPT3YDR394W YCK3P39962 524 aa11.74□□□□□ -0.53
RPT3YDR394W HAA1Q12753 694 aaKnown RBP11.6□□□□□ -0.55
RPT3YDR394W RPL17AP05740 184 aaKnown RBP11.58□□□□□ -0.56
RPT3YDR394W RPL17BP46990 184 aaKnown RBP11.58□□□□□ -0.56
RPT3YDR394W REB1P21538 810 aa11.47□□□□□ -0.57
RPT3YDR394W MRPL32P25348 183 aa11.34□□□□□ -0.59
RPT3YDR394W SPT21P35209 758 aa11.14□□□□□ -0.63
RPT3YDR394W YKR023WP36119 530 aaKnown RBP10.93□□□□□ -0.66
RPT3YDR394W CDC27P38042 758 aa10.89□□□□□ -0.67
RPT3YDR394W TFA1P36100 482 aa10.87□□□□□ -0.67
RPT3YDR394W RIM101P33400 625 aa10.79□□□□□ -0.68
RPT3YDR394W YGL015CP33199 130 aa10.77□□□□□ -0.69
RPT3YDR394W TFC8Q12308 588 aa10.7□□□□□ -0.7
RPT3YDR394W HOP09932 586 aa10.69□□□□□ -0.7
RPT3YDR394W DCD1P06773 312 aa10.64□□□□□ -0.71
RPT3YDR394W SGS1P35187 1447 aa10.59□□□□□ -0.71
RPT3YDR394W UBP10P53874 792 aaPredicted RBP10.51□□□□□ -0.73
RPT3YDR394W MAP2P38174 421 aaKnown RBP10.49□□□□□ -0.73
RPT3YDR394W OXP1P28273 1286 aa10.46□□□□□ -0.73
RPT3YDR394W INO80P53115 1489 aa10.43□□□□□ -0.74
RPT3YDR394W BCH2P36122 765 aa10.35□□□□□ -0.75
RPT3YDR394W SCY1P53009 804 aa10.33□□□□□ -0.76
RPT3YDR394W PTP3P40048 928 aa10.24□□□□□ -0.77
RPT3YDR394W YIL055CP40523 627 aaKnown RBP10.24□□□□□ -0.77
RPT3YDR394W SPA2P23201 1466 aaKnown RBP10.23□□□□□ -0.77
RPT3YDR394W TCB3Q03640 1545 aaKnown RBP10.23□□□□□ -0.77
RPT3YDR394W SLX5P32828 619 aaKnown RBP10.17□□□□□ -0.78
RPT3YDR394W YAH1Q12184 172 aaKnown RBP10.17□□□□□ -0.78
RPT3YDR394W SSN2P38931 1420 aa10.16□□□□□ -0.78
RPT3YDR394W EPS1P40557 701 aa10.12□□□□□ -0.79
RPT3YDR394W RSM7P47150 247 aa10.12□□□□□ -0.79
RPT3YDR394W BDF1P35817 686 aa10.06□□□□□ -0.8
RPT3YDR394W TIF4632P39936 914 aaKnown RBP10.05□□□□□ -0.8
RPT3YDR394W YLR271WQ06152 274 aa10.03□□□□□ -0.8
RPT3YDR394W AI2P03876 854 aa10.01□□□□□ -0.81
RPT3YDR394W TY1B-DR4Q07793 1604 aa10□□□□□ -0.81
RPT3YDR394W TGL3P40308 642 aa10□□□□□ -0.81
RPT3YDR394W SSP1P38871 571 aa9.97□□□□□ -0.81
RPT3YDR394W BBC1P47068 1157 aa9.97□□□□□ -0.81
RPT3YDR394W MON2P48563 1636 aaPredicted RBP9.92□□□□□ -0.82
RPT3YDR394W HSL1P34244 1518 aa9.87□□□□□ -0.83
RPT3YDR394W PSD2P53037 1138 aaKnown RBP9.86□□□□□ -0.83
RPT3YDR394W ARP8Q12386 881 aaKnown RBP RIP-Chip data9.85□□□□□ -0.83not detected
RPT3YDR394W SPT6P23615 1451 aaKnown RBP9.85□□□□□ -0.83
RPT3YDR394W SWR1Q05471 1514 aa9.77□□□□□ -0.85
RPT3YDR394W BUD31P25337 157 aaPredicted RBP9.76□□□□□ -0.85
RPT3YDR394W NSR1P27476 414 aaKnown RBP RIP-Chip data9.7□□□□□ -0.86not detected
RPT3YDR394W CST9Q06032 482 aa9.7□□□□□ -0.86
RPT3YDR394W MGA2P40578 1113 aa9.69□□□□□ -0.86
RPT3YDR394W HIR3P47171 1648 aa9.68□□□□□ -0.86
RPT3YDR394W MRM1P25270 412 aa9.66□□□□□ -0.86
RPT3YDR394W MST1P07236 462 aa9.64□□□□□ -0.87
RPT3YDR394W XRN1P22147 1528 aaKnown RBP9.64□□□□□ -0.87
RPT3YDR394W YOR238WQ08634 303 aa9.61□□□□□ -0.87
RPT3YDR394W YAP5P40574 245 aa9.6□□□□□ -0.87
RPT3YDR394W UBP9P39967 754 aa9.57□□□□□ -0.88
RPT3YDR394W REV3P14284 1504 aa9.51□□□□□ -0.89
RPT3YDR394W SIN3P22579 1536 aa9.49□□□□□ -0.89
RPT3YDR394W RTG3P38165 486 aa9.46□□□□□ -0.9
RPT3YDR394W VPS29P38759 282 aa9.46□□□□□ -0.9
RPT3YDR394W RCR1P38212 213 aa9.44□□□□□ -0.9
RPT3YDR394W YBL029C-AQ3E756 94 aa9.44□□□□□ -0.9
RPT3YDR394W DNA2P38859 1522 aa9.44□□□□□ -0.9
RPT3YDR394W KOG1P38873 1557 aa9.44□□□□□ -0.9
RPT3YDR394W THO2P53552 1597 aaKnown RBP9.43□□□□□ -0.9
RPT3YDR394W PIB1Q06651 286 aa9.43□□□□□ -0.9
RPT3YDR394W YMR1P47147 688 aaKnown RBP RIP-Chip data9.4□□□□□ -0.9not detected
RPT3YDR394W SSK2P53599 1579 aa9.4□□□□□ -0.9
RPT3YDR394W BUD4P47136 1447 aa9.37□□□□□ -0.91
RPT3YDR394W DBP1P24784 617 aaKnown RBP9.36□□□□□ -0.91
RPT3YDR394W STS1P38637 319 aa9.36□□□□□ -0.91
RPT3YDR394W GTT3P39996 337 aa9.36□□□□□ -0.91
RPT3YDR394W TAF2P23255 1407 aa9.35□□□□□ -0.91
RPT3YDR394W VNX1P42839 908 aa9.35□□□□□ -0.91
RPT3YDR394W YFR006WP43590 535 aa9.34□□□□□ -0.91
RPT3YDR394W WSC3Q12215 556 aa9.33□□□□□ -0.92
RPT3YDR394W SIS1P25294 352 aaKnown RBP9.3□□□□□ -0.92
RPT3YDR394W ECM5Q03214 1411 aa9.3□□□□□ -0.92
RPT3YDR394W MYO2P19524 1574 aaKnown RBP9.29□□□□□ -0.92
RPT3YDR394W ESP1Q03018 1630 aa9.26□□□□□ -0.93
RPT3YDR394W CHD1P32657 1468 aa9.24□□□□□ -0.93
RPT3YDR394W VMA1P17255 1071 aaKnown RBP9.24□□□□□ -0.93
RPT3YDR394W RAM2P29703 316 aa9.24□□□□□ -0.93
RPT3YDR394W SPP1Q03012 353 aa9.24□□□□□ -0.93
RPT3YDR394W ATG2P53855 1592 aa9.23□□□□□ -0.93
RPT3YDR394W SKI3P17883 1432 aaKnown RBP9.22□□□□□ -0.93
RPT3YDR394W YPK9Q12697 1472 aa9.22□□□□□ -0.93
Retrieved 100 of 5,963 RNA–protein pairs in 7.9 ms