RNA–Protein interactions for RNA: YDR301W

CFT1, Transcript of RNA-binding subunit of the mRNA cleavage and polyadenylation factor, yeastyeast

Gene CFT1, Length 4,074 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
CFT1YDR301W INO80P53115 1489 aa3.44□□□□□ -1.86
CFT1YDR301W MON2P48563 1636 aaPredicted RBP3.44□□□□□ -1.86
CFT1YDR301W TY1B-DR4Q07793 1604 aa3.41□□□□□ -1.86
CFT1YDR301W TCB3Q03640 1545 aaKnown RBP3.39□□□□□ -1.87
CFT1YDR301W SGS1P35187 1447 aa3.34□□□□□ -1.87
CFT1YDR301W SWR1Q05471 1514 aa3.29□□□□□ -1.88
CFT1YDR301W SPA2P23201 1466 aaKnown RBP3.26□□□□□ -1.89
CFT1YDR301W HSL1P34244 1518 aa3.24□□□□□ -1.89
CFT1YDR301W KOG1P38873 1557 aa3.2□□□□□ -1.9
CFT1YDR301W SPT6P23615 1451 aaKnown RBP3.2□□□□□ -1.9
CFT1YDR301W FAP1P53971 965 aa3.2□□□□□ -1.9
CFT1YDR301W HIR3P47171 1648 aa3.18□□□□□ -1.9
CFT1YDR301W SSN2P38931 1420 aa3.18□□□□□ -1.9
CFT1YDR301W THO2P53552 1597 aaKnown RBP3.17□□□□□ -1.9
CFT1YDR301W SIN3P22579 1536 aa3.16□□□□□ -1.9
CFT1YDR301W DNA2P38859 1522 aa3.16□□□□□ -1.9
CFT1YDR301W SSK2P53599 1579 aa3.1□□□□□ -1.91
CFT1YDR301W REV3P14284 1504 aa3.09□□□□□ -1.91
CFT1YDR301W ATG2P53855 1592 aa3.09□□□□□ -1.91
CFT1YDR301W PEP1P32319 1579 aa3.09□□□□□ -1.92
CFT1YDR301W XRN1P22147 1528 aaKnown RBP3.08□□□□□ -1.92
CFT1YDR301W ESP1Q03018 1630 aa3.07□□□□□ -1.92
CFT1YDR301W BUD4P47136 1447 aa3.07□□□□□ -1.92
CFT1YDR301W MYO2P19524 1574 aaKnown RBP3.05□□□□□ -1.92
CFT1YDR301W MDS3P53094 1487 aa3.04□□□□□ -1.92
CFT1YDR301W DRS1P32892 752 aaKnown RBP3.02□□□□□ -1.93
CFT1YDR301W YPK9Q12697 1472 aa3.01□□□□□ -1.93
CFT1YDR301W ECM5Q03214 1411 aa3□□□□□ -1.93
CFT1YDR301W TY2B-LR1P0C2J3 1770 aa2.98□□□□□ -1.93
CFT1YDR301W TY2B-FP0CX63 1770 aa2.98□□□□□ -1.93
CFT1YDR301W TY2B-GR2P0CX64 1770 aa2.98□□□□□ -1.93
CFT1YDR301W TY2B-CP25384 1770 aa2.98□□□□□ -1.93
CFT1YDR301W TY2B-DR2Q03494 1770 aa2.98□□□□□ -1.93
CFT1YDR301W TY1B-DR1Q03855 1755 aa2.98□□□□□ -1.93
CFT1YDR301W TY2B-DR3Q07791 1770 aaKnown RBP2.98□□□□□ -1.93
CFT1YDR301W TY2B-OR1Q12113 1770 aa2.98□□□□□ -1.93
CFT1YDR301W TY2B-DR1Q12472 1770 aa2.98□□□□□ -1.93
CFT1YDR301W TY2B-OR2Q12501 1770 aa2.98□□□□□ -1.93
CFT1YDR301W RPO31P04051 1460 aa2.97□□□□□ -1.93
CFT1YDR301W PRY3P47033 881 aa2.97□□□□□ -1.93
CFT1YDR301W SCC2Q04002 1493 aa2.97□□□□□ -1.93
CFT1YDR301W TY1B-BRQ12193 1756 aa2.96□□□□□ -1.93
CFT1YDR301W TY1B-GR3Q12316 1755 aa2.96□□□□□ -1.93
CFT1YDR301W TY1B-ORQ92393 1755 aa2.96□□□□□ -1.93
CFT1YDR301W TY1B-DR3Q99231 1755 aa2.96□□□□□ -1.93
CFT1YDR301W POL1P13382 1468 aa2.96□□□□□ -1.94
CFT1YDR301W TY2B-BQ12491 1770 aa2.96□□□□□ -1.94
CFT1YDR301W TY1B-HO13535 1793 aa2.95□□□□□ -1.94
CFT1YDR301W TY1B-DR5P0C2I2 1755 aa2.95□□□□□ -1.94
CFT1YDR301W TY1B-DR6P0C2I3 1755 aa2.95□□□□□ -1.94
CFT1YDR301W TY1B-LR2P0C2I5 1755 aa2.95□□□□□ -1.94
CFT1YDR301W TY1B-LR3P0C2I6 1755 aaKnown RBP2.95□□□□□ -1.94
CFT1YDR301W TY1B-PR1P0C2I9 1755 aaKnown RBP2.95□□□□□ -1.94
CFT1YDR301W TY1B-PR2P0C2J0 1756 aa2.95□□□□□ -1.94
CFT1YDR301W TY1B-PR3P0C2J1 1755 aaKnown RBP2.95□□□□□ -1.94
CFT1YDR301W TY1B-JR1P47098 1755 aa2.95□□□□□ -1.94
CFT1YDR301W TY1B-ML2Q03434 1755 aaKnown RBP2.95□□□□□ -1.94
CFT1YDR301W TY1B-ER1Q03612 1755 aa2.95□□□□□ -1.94
CFT1YDR301W TY1B-ML1Q04711 1755 aaKnown RBP2.95□□□□□ -1.94
CFT1YDR301W TY1B-GR2Q12269 1755 aa2.95□□□□□ -1.94
CFT1YDR301W TY1B-OLQ12273 1755 aa2.95□□□□□ -1.94
CFT1YDR301W TY1B-PLQ12414 1755 aaKnown RBP2.95□□□□□ -1.94
CFT1YDR301W CHD1P32657 1468 aa2.95□□□□□ -1.94
CFT1YDR301W YCF1P39109 1515 aaKnown RBP2.95□□□□□ -1.94
CFT1YDR301W BPT1P14772 1559 aa2.94□□□□□ -1.94
CFT1YDR301W TAF2P23255 1407 aa2.93□□□□□ -1.94
CFT1YDR301W YOR1P53049 1477 aa2.92□□□□□ -1.94
CFT1YDR301W RKR1Q04781 1562 aa2.92□□□□□ -1.94
CFT1YDR301W TOP2P06786 1428 aaKnown RBP2.91□□□□□ -1.94
CFT1YDR301W SMC4Q12267 1418 aa2.91□□□□□ -1.94
CFT1YDR301W STU1P38198 1513 aa2.91□□□□□ -1.94
CFT1YDR301W CDC25P04821 1589 aa2.91□□□□□ -1.94
CFT1YDR301W MYO4P32492 1471 aa2.9□□□□□ -1.94
CFT1YDR301W RPA190P10964 1664 aaKnown RBP2.89□□□□□ -1.95
CFT1YDR301W TY1B-JR2P47100 1755 aaKnown RBP2.89□□□□□ -1.95
CFT1YDR301W TY1B-ER2Q03619 1755 aa2.89□□□□□ -1.95
CFT1YDR301W TY1B-MR1Q04214 1755 aa2.89□□□□□ -1.95
CFT1YDR301W TY1B-MR2Q04670 1755 aaKnown RBP2.89□□□□□ -1.95
CFT1YDR301W TY1B-LR1Q12088 1755 aaKnown RBP2.89□□□□□ -1.95
CFT1YDR301W TY1B-NL1Q12112 1755 aa2.89□□□□□ -1.95
CFT1YDR301W TY1B-GR1Q12141 1755 aa2.89□□□□□ -1.95
CFT1YDR301W TY1B-BLQ12490 1755 aa2.89□□□□□ -1.95
CFT1YDR301W SKI3P17883 1432 aaKnown RBP2.89□□□□□ -1.95
CFT1YDR301W UFD4P33202 1483 aa2.89□□□□□ -1.95
CFT1YDR301W ESC1Q03661 1658 aaKnown RBP2.88□□□□□ -1.95
CFT1YDR301W RPO21P04050 1733 aaKnown RBP2.87□□□□□ -1.95
CFT1YDR301W NTE1Q04958 1679 aa2.87□□□□□ -1.95
CFT1YDR301W MLP2P40457 1679 aa2.86□□□□□ -1.95
CFT1YDR301W PAN1P32521 1480 aa2.85□□□□□ -1.95
CFT1YDR301W YTA7P40340 1379 aa2.85□□□□□ -1.95
CFT1YDR301W MMS22Q06164 1454 aa2.84□□□□□ -1.95
CFT1YDR301W MET5P47169 1442 aa2.83□□□□□ -1.96
CFT1YDR301W MTC1P47018 478 aaKnown RBP2.83□□□□□ -1.96
CFT1YDR301W DNF1P32660 1571 aa2.83□□□□□ -1.96
CFT1YDR301W RSE1Q04693 1361 aaKnown RBP2.83□□□□□ -1.96
CFT1YDR301W ULS1Q08562 1619 aa2.83□□□□□ -1.96
CFT1YDR301W VTH1P40438 1549 aa2.83□□□□□ -1.96
CFT1YDR301W VTH2P40890 1549 aa2.83□□□□□ -1.96
CFT1YDR301W SNQ2P32568 1501 aaKnown RBP2.82□□□□□ -1.96
CFT1YDR301W IRC20Q06554 1556 aa2.82□□□□□ -1.96
Retrieved 100 of 5,963 RNA–protein pairs in 14.2 ms