RNA–Protein interactions for RNA: YDL185W

VMA1, Transcript of Subunit A of the V1 peripheral membrane domain of V-ATPase, yeast

Gene VMA1, Length 3,216 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
VMA1	YDL185W	DRS1	P32892	752 aa	Known RBP	7.08	□□□□□ -1.28
VMA1	YDL185W	MTC1	P47018	478 aa	Known RBP	6.39	□□□□□ -1.39
VMA1	YDL185W	BFR2	Q06631	534 aa	Known RBP	6.37	□□□□□ -1.39
VMA1	YDL185W	SPA2	P23201	1466 aa	Known RBP	6.22	□□□□□ -1.41
VMA1	YDL185W	SGS1	P35187	1447 aa		6.14	□□□□□ -1.43
VMA1	YDL185W	TFA1	P36100	482 aa		6.14	□□□□□ -1.43
VMA1	YDL185W	SSN2	P38931	1420 aa		6.11	□□□□□ -1.43
VMA1	YDL185W	SKI3	P17883	1432 aa	Known RBP	5.96	□□□□□ -1.45
VMA1	YDL185W	NOP2	P40991	618 aa	Known RBP	5.92	□□□□□ -1.46
VMA1	YDL185W	NSR1	P27476	414 aa	Known RBP RIP-Chip data	5.87	□□□□□ -1.47	not detected
VMA1	YDL185W	RQC2	Q12532	1038 aa	Known RBP	5.86	□□□□□ -1.47
VMA1	YDL185W	INO80	P53115	1489 aa		5.85	□□□□□ -1.47
VMA1	YDL185W	DIP2	Q12220	943 aa	Predicted RBP	5.79	□□□□□ -1.48
VMA1	YDL185W	CHD1	P32657	1468 aa		5.71	□□□□□ -1.5
VMA1	YDL185W	AVT3	P36062	692 aa		5.7	□□□□□ -1.5
VMA1	YDL185W	MMS22	Q06164	1454 aa		5.69	□□□□□ -1.5
VMA1	YDL185W	UFD4	P33202	1483 aa		5.62	□□□□□ -1.51
VMA1	YDL185W	XRN1	P22147	1528 aa	Known RBP	5.61	□□□□□ -1.51
VMA1	YDL185W	TCB3	Q03640	1545 aa	Known RBP	5.6	□□□□□ -1.51
VMA1	YDL185W	RSE1	Q04693	1361 aa	Known RBP	5.59	□□□□□ -1.51
VMA1	YDL185W	TY1B-DR4	Q07793	1604 aa		5.56	□□□□□ -1.52
VMA1	YDL185W	MON2	P48563	1636 aa	Predicted RBP	5.54	□□□□□ -1.52
VMA1	YDL185W	EBP2	P36049	427 aa	Known RBP	5.54	□□□□□ -1.52
VMA1	YDL185W	TRM732	Q03496	1420 aa		5.53	□□□□□ -1.52
VMA1	YDL185W	HSL1	P34244	1518 aa		5.53	□□□□□ -1.52
VMA1	YDL185W	CAB3	P36076	571 aa		5.52	□□□□□ -1.53
VMA1	YDL185W	ENP1	P38333	483 aa	Known RBP	5.52	□□□□□ -1.53
VMA1	YDL185W	SPP41	P38904	1435 aa		5.48	□□□□□ -1.53
VMA1	YDL185W	YPR148C	Q06523	435 aa		5.48	□□□□□ -1.53
VMA1	YDL185W	IKI3	Q06706	1349 aa	Known RBP	5.47	□□□□□ -1.53
VMA1	YDL185W	SPT6	P23615	1451 aa	Known RBP	5.47	□□□□□ -1.53
VMA1	YDL185W	STH1	P32597	1359 aa		5.47	□□□□□ -1.53
VMA1	YDL185W	HIR3	P47171	1648 aa		5.47	□□□□□ -1.53
VMA1	YDL185W	THO2	P53552	1597 aa	Known RBP	5.45	□□□□□ -1.54
VMA1	YDL185W	STU1	P38198	1513 aa		5.45	□□□□□ -1.54
VMA1	YDL185W	NUP170	P38181	1502 aa		5.44	□□□□□ -1.54
VMA1	YDL185W	REV3	P14284	1504 aa		5.44	□□□□□ -1.54
VMA1	YDL185W	MYO2	P19524	1574 aa	Known RBP	5.43	□□□□□ -1.54
VMA1	YDL185W	SSK2	P53599	1579 aa		5.43	□□□□□ -1.54
VMA1	YDL185W	SIN3	P22579	1536 aa		5.43	□□□□□ -1.54
VMA1	YDL185W	DMA1	P38823	416 aa		5.42	□□□□□ -1.54
VMA1	YDL185W	SPT7	P35177	1332 aa		5.42	□□□□□ -1.54
VMA1	YDL185W	SSM4	P40318	1319 aa		5.41	□□□□□ -1.54
VMA1	YDL185W	ECM5	Q03214	1411 aa		5.4	□□□□□ -1.54
VMA1	YDL185W	BPT1	P14772	1559 aa		5.4	□□□□□ -1.55
VMA1	YDL185W	POL5	P39985	1022 aa	Known RBP	5.4	□□□□□ -1.55
VMA1	YDL185W	PRS1	P32895	427 aa	Known RBP	5.39	□□□□□ -1.55
VMA1	YDL185W	SAS10	Q12136	610 aa	Predicted RBP	5.39	□□□□□ -1.55
VMA1	YDL185W	POL1	P13382	1468 aa		5.39	□□□□□ -1.55
VMA1	YDL185W	SCC2	Q04002	1493 aa		5.39	□□□□□ -1.55
VMA1	YDL185W	ESP1	Q03018	1630 aa		5.37	□□□□□ -1.55
VMA1	YDL185W	YTA7	P40340	1379 aa		5.37	□□□□□ -1.55
VMA1	YDL185W	PDR10	P51533	1564 aa		5.35	□□□□□ -1.55
VMA1	YDL185W	TAF2	P23255	1407 aa		5.34	□□□□□ -1.55
VMA1	YDL185W	MLP2	P40457	1679 aa		5.34	□□□□□ -1.55
VMA1	YDL185W	SEC3	P33332	1336 aa	Known RBP	5.34	□□□□□ -1.55
VMA1	YDL185W	PEP1	P32319	1579 aa		5.33	□□□□□ -1.56
VMA1	YDL185W	TAF7	Q05021	590 aa		5.33	□□□□□ -1.56
VMA1	YDL185W	PTP3	P40048	928 aa		5.31	□□□□□ -1.56
VMA1	YDL185W	IME2	P32581	645 aa		5.29	□□□□□ -1.56
VMA1	YDL185W	SIS2	P36024	562 aa		5.29	□□□□□ -1.56
VMA1	YDL185W	RTT106	P40161	455 aa		5.29	□□□□□ -1.56
VMA1	YDL185W	CFT1	Q06632	1357 aa	Known RBP	5.28	□□□□□ -1.56
VMA1	YDL185W	BUD4	P47136	1447 aa		5.27	□□□□□ -1.57
VMA1	YDL185W	MYO4	P32492	1471 aa		5.27	□□□□□ -1.57
VMA1	YDL185W	DNA2	P38859	1522 aa		5.27	□□□□□ -1.57
VMA1	YDL185W	SRB8	P25648	1427 aa		5.27	□□□□□ -1.57
VMA1	YDL185W	YLR419W	Q06698	1435 aa	Known RBP	5.26	□□□□□ -1.57
VMA1	YDL185W	YOR1	P53049	1477 aa		5.26	□□□□□ -1.57
VMA1	YDL185W	YCF1	P39109	1515 aa	Known RBP	5.26	□□□□□ -1.57
VMA1	YDL185W	SNQ2	P32568	1501 aa	Known RBP	5.25	□□□□□ -1.57
VMA1	YDL185W	CLC1	P17891	233 aa		5.24	□□□□□ -1.57
VMA1	YDL185W	OPY1	P38271	328 aa		5.24	□□□□□ -1.57
VMA1	YDL185W	RKR1	Q04781	1562 aa		5.24	□□□□□ -1.57
VMA1	YDL185W	PAN1	P32521	1480 aa		5.24	□□□□□ -1.57
VMA1	YDL185W	YPK9	Q12697	1472 aa		5.24	□□□□□ -1.57
VMA1	YDL185W	TCB2	P48231	1178 aa		5.23	□□□□□ -1.57
VMA1	YDL185W	KOG1	P38873	1557 aa		5.22	□□□□□ -1.57
VMA1	YDL185W	SMC4	Q12267	1418 aa		5.22	□□□□□ -1.57
VMA1	YDL185W	TSC11	P40061	1430 aa		5.22	□□□□□ -1.57
VMA1	YDL185W	URN1	Q06525	465 aa	Known RBP	5.21	□□□□□ -1.58
VMA1	YDL185W	LEU3	P08638	886 aa		5.21	□□□□□ -1.58
VMA1	YDL185W	PSD2	P53037	1138 aa	Known RBP	5.2	□□□□□ -1.58
VMA1	YDL185W	PDR15	Q04182	1529 aa	Known RBP	5.2	□□□□□ -1.58
VMA1	YDL185W	GEA1	P47102	1408 aa	Predicted RBP	5.19	□□□□□ -1.58
VMA1	YDL185W	YFR016C	P43597	1233 aa	Known RBP	5.19	□□□□□ -1.58
VMA1	YDL185W	SWR1	Q05471	1514 aa		5.19	□□□□□ -1.58
VMA1	YDL185W	TY3B-G	Q99315	1547 aa		5.19	□□□□□ -1.58
VMA1	YDL185W	ATG2	P53855	1592 aa		5.18	□□□□□ -1.58
VMA1	YDL185W	ULS1	Q08562	1619 aa		5.17	□□□□□ -1.58
VMA1	YDL185W	TOP2	P06786	1428 aa	Known RBP	5.17	□□□□□ -1.58
VMA1	YDL185W	RPL17A	P05740	184 aa	Known RBP	5.17	□□□□□ -1.58
VMA1	YDL185W	RPL17B	P46990	184 aa	Known RBP	5.17	□□□□□ -1.58
VMA1	YDL185W	ESC1	Q03661	1658 aa	Known RBP	5.16	□□□□□ -1.58
VMA1	YDL185W	TY1B-DR3	Q99231	1755 aa		5.16	□□□□□ -1.58
VMA1	YDL185W	RPC31	P17890	251 aa		5.16	□□□□□ -1.58
VMA1	YDL185W	IRC20	Q06554	1556 aa		5.15	□□□□□ -1.58
VMA1	YDL185W	IFH1	P39520	1085 aa		5.15	□□□□□ -1.59
VMA1	YDL185W	FUN12	P39730	1002 aa	Known RBP	5.14	□□□□□ -1.59
VMA1	YDL185W	NUP159	P40477	1460 aa		5.14	□□□□□ -1.59

Retrieved 100 of 5,963 RNA–protein pairs in 19.4 ms