RNA–Protein interactions for RNA: YDL112W

TRM3, Transcript of 2'-O-ribose methyltransferase, yeastyeast

Gene TRM3, Length 4,311 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
TRM3YDL112W DRS1P32892 752 aaKnown RBP5.32□□□□□ -1.56
TRM3YDL112W MTC1P47018 478 aaKnown RBP5.02□□□□□ -1.61
TRM3YDL112W BFR2Q06631 534 aaKnown RBP4.64□□□□□ -1.67
TRM3YDL112W FAP1P53971 965 aa4.47□□□□□ -1.69
TRM3YDL112W DIP2Q12220 943 aaPredicted RBP4.42□□□□□ -1.7
TRM3YDL112W RPG1P38249 964 aaKnown RBP4.16□□□□□ -1.74
TRM3YDL112W AVT3P36062 692 aa4.15□□□□□ -1.74
TRM3YDL112W ISW2Q08773 1120 aa4.14□□□□□ -1.75
TRM3YDL112W PRY3P47033 881 aa4.14□□□□□ -1.75
TRM3YDL112W RSE1Q04693 1361 aaKnown RBP4.14□□□□□ -1.75
TRM3YDL112W RPL17AP05740 184 aaKnown RBP4.1□□□□□ -1.75
TRM3YDL112W RPL17BP46990 184 aaKnown RBP4.1□□□□□ -1.75
TRM3YDL112W REB1P21538 810 aa4.08□□□□□ -1.76
TRM3YDL112W TFA1P36100 482 aa4.07□□□□□ -1.76
TRM3YDL112W TSR3Q12094 313 aaKnown RBP4.03□□□□□ -1.76
TRM3YDL112W AAD16Q02895 342 aa4□□□□□ -1.77
TRM3YDL112W PTP3P40048 928 aa3.96□□□□□ -1.78
TRM3YDL112W PRI1P10363 409 aa3.94□□□□□ -1.78
TRM3YDL112W YAH1Q12184 172 aaKnown RBP3.9□□□□□ -1.79
TRM3YDL112W MON2P48563 1636 aaPredicted RBP3.89□□□□□ -1.79
TRM3YDL112W MRPL32P25348 183 aa3.8□□□□□ -1.8
TRM3YDL112W DCD1P06773 312 aa3.79□□□□□ -1.8
TRM3YDL112W HOP09932 586 aa3.77□□□□□ -1.81
TRM3YDL112W YIL055CP40523 627 aaKnown RBP3.75□□□□□ -1.81
TRM3YDL112W INO80P53115 1489 aa3.74□□□□□ -1.81
TRM3YDL112W TY1B-DR4Q07793 1604 aa3.67□□□□□ -1.82
TRM3YDL112W TCB3Q03640 1545 aaKnown RBP3.65□□□□□ -1.82
TRM3YDL112W SWR1Q05471 1514 aa3.64□□□□□ -1.83
TRM3YDL112W SPT21P35209 758 aa3.64□□□□□ -1.83
TRM3YDL112W DMA1P38823 416 aa3.63□□□□□ -1.83
TRM3YDL112W RQC2Q12532 1038 aaKnown RBP3.63□□□□□ -1.83
TRM3YDL112W KOG1P38873 1557 aa3.62□□□□□ -1.83
TRM3YDL112W HAA1Q12753 694 aaKnown RBP3.62□□□□□ -1.83
TRM3YDL112W SSP1P38871 571 aa3.61□□□□□ -1.83
TRM3YDL112W CDC27P38042 758 aa3.61□□□□□ -1.83
TRM3YDL112W DNA2P38859 1522 aa3.6□□□□□ -1.83
TRM3YDL112W OXP1P28273 1286 aa3.59□□□□□ -1.83
TRM3YDL112W ARP8Q12386 881 aaKnown RBP RIP-Chip data3.59□□□□□ -1.83not detected
TRM3YDL112W RIM101P33400 625 aa3.59□□□□□ -1.84
TRM3YDL112W YKR023WP36119 530 aaKnown RBP3.59□□□□□ -1.84
TRM3YDL112W SCY1P53009 804 aa3.57□□□□□ -1.84
TRM3YDL112W TFC8Q12308 588 aa3.53□□□□□ -1.84
TRM3YDL112W RSM7P47150 247 aa3.53□□□□□ -1.84
TRM3YDL112W YLR271WQ06152 274 aa3.53□□□□□ -1.85
TRM3YDL112W YCK3P39962 524 aa3.51□□□□□ -1.85
TRM3YDL112W BCH2P36122 765 aa3.49□□□□□ -1.85
TRM3YDL112W CST9Q06032 482 aa3.49□□□□□ -1.85
TRM3YDL112W PIB1Q06651 286 aa3.49□□□□□ -1.85
TRM3YDL112W BBC1P47068 1157 aa3.49□□□□□ -1.85
TRM3YDL112W AI2P03876 854 aa3.48□□□□□ -1.85
TRM3YDL112W MAP2P38174 421 aaKnown RBP3.48□□□□□ -1.85
TRM3YDL112W SGS1P35187 1447 aa3.48□□□□□ -1.85
TRM3YDL112W MRM1P25270 412 aa3.48□□□□□ -1.85
TRM3YDL112W HSL1P34244 1518 aa3.47□□□□□ -1.85
TRM3YDL112W THO2P53552 1597 aaKnown RBP3.44□□□□□ -1.86
TRM3YDL112W EPS1P40557 701 aa3.44□□□□□ -1.86
TRM3YDL112W SPT6P23615 1451 aaKnown RBP3.44□□□□□ -1.86
TRM3YDL112W MGA2P40578 1113 aa3.41□□□□□ -1.86
TRM3YDL112W YFR006WP43590 535 aa3.41□□□□□ -1.86
TRM3YDL112W SLX5P32828 619 aaKnown RBP3.4□□□□□ -1.86
TRM3YDL112W RCR1P38212 213 aa3.4□□□□□ -1.87
TRM3YDL112W BDF1P35817 686 aa3.39□□□□□ -1.87
TRM3YDL112W HIR3P47171 1648 aa3.39□□□□□ -1.87
TRM3YDL112W YGL015CP33199 130 aa3.38□□□□□ -1.87
TRM3YDL112W MIF2P35201 549 aa3.37□□□□□ -1.87
TRM3YDL112W BUD4P47136 1447 aa3.36□□□□□ -1.87
TRM3YDL112W SPA2P23201 1466 aaKnown RBP3.35□□□□□ -1.87
TRM3YDL112W PEP1P32319 1579 aa3.34□□□□□ -1.87
TRM3YDL112W MDS3P53094 1487 aa3.33□□□□□ -1.88
TRM3YDL112W SSK2P53599 1579 aa3.32□□□□□ -1.88
TRM3YDL112W ECM5Q03214 1411 aa3.32□□□□□ -1.88
TRM3YDL112W PSD2P53037 1138 aaKnown RBP3.31□□□□□ -1.88
TRM3YDL112W ATG2P53855 1592 aa3.31□□□□□ -1.88
TRM3YDL112W SIN3P22579 1536 aa3.31□□□□□ -1.88
TRM3YDL112W SPB4P25808 606 aaPredicted RBP3.3□□□□□ -1.88
TRM3YDL112W VPS70P47161 811 aa3.3□□□□□ -1.88
TRM3YDL112W WSC3Q12215 556 aa3.3□□□□□ -1.88
TRM3YDL112W REV3P14284 1504 aa3.3□□□□□ -1.88
TRM3YDL112W GTT3P39996 337 aa3.29□□□□□ -1.88
TRM3YDL112W TIF4632P39936 914 aaKnown RBP3.28□□□□□ -1.88
TRM3YDL112W DBP1P24784 617 aaKnown RBP3.28□□□□□ -1.88
TRM3YDL112W RTG3P38165 486 aa3.28□□□□□ -1.88
TRM3YDL112W UBP10P53874 792 aaPredicted RBP3.27□□□□□ -1.89
TRM3YDL112W RAM2P29703 316 aa3.27□□□□□ -1.89
TRM3YDL112W YOR238WQ08634 303 aa3.26□□□□□ -1.89
TRM3YDL112W XRN1P22147 1528 aaKnown RBP3.26□□□□□ -1.89
TRM3YDL112W SET1P38827 1080 aaKnown RBP3.25□□□□□ -1.89
TRM3YDL112W BPT1P14772 1559 aa3.24□□□□□ -1.89
TRM3YDL112W SET4P42948 560 aa3.22□□□□□ -1.89
TRM3YDL112W STS1P38637 319 aa3.21□□□□□ -1.9
TRM3YDL112W ESP1Q03018 1630 aa3.21□□□□□ -1.9
TRM3YDL112W SSN2P38931 1420 aa3.2□□□□□ -1.9
TRM3YDL112W YCF1P39109 1515 aaKnown RBP3.2□□□□□ -1.9
TRM3YDL112W COQ8P27697 501 aa3.2□□□□□ -1.9
TRM3YDL112W DCW1P36091 449 aa3.2□□□□□ -1.9
TRM3YDL112W YMR1P47147 688 aaKnown RBP RIP-Chip data3.18□□□□□ -1.9not detected
TRM3YDL112W VPS29P38759 282 aa3.18□□□□□ -1.9
TRM3YDL112W ATH1P48016 1211 aa3.17□□□□□ -1.9
TRM3YDL112W MYO2P19524 1574 aaKnown RBP3.17□□□□□ -1.9
TRM3YDL112W VHR2P40041 505 aa3.17□□□□□ -1.9
Retrieved 100 of 5,963 RNA–protein pairs in 11.5 ms